dr Krzysztof Bojarski
Employment
- Assistant professor at Department of Physical Chemistry
- 2022 - present at Chemistry
- 2019 - 2021 Principal Investigator at Chemistry
Publications
Filters
total: 10
Catalog Publications
Year 2023
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Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment
PublicationWe present the results for CAPRI Round 54, the 5th joint CASP-CAPRI protein assembly prediction challenge. The Round offered 37 targets, including 14 homodimers, 3 homo-trimers, 13 heterodimers including 3 antibody–antigen complexes, and 7 large assemblies. On average 70 CASP and CAPRI predictor groups, including more than 20 automatics servers, submitted models for each target. A total of 21 941 models submitted by these groups...
Year 2022
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Explicit solvent repulsive scaling replica exchange molecular dynamics ( RS‐REMD ) in molecular modeling of protein‐glycosaminoglycan complexes
PublicationGlycosaminoglcyans (GAGs), linear anionic periodic polysaccharides, are crucial for many biologically relevant functions in the extracellular matrix. By interacting with proteins GAGs mediate processes such as cancer development, cell proliferation and the onset of neurodegenerative diseases. Despite this eminent importance of GAGs, they still represent a limited focus for the computational community in comparison to other classes...
Year 2021
Year 2020
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Rat cathepsin K: Enzymatic specificity and regulation of its collagenolytic activity
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Role of Glycosaminoglycans in Procathepsin B Maturation: Molecular Mechanism Elucidated by a Computational Study
Publication
Year 2019
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Local and long range potentials for heparin‐protein systems for coarse‐grained simulations
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Molecular dynamics insights into protein‐glycosaminoglycan systems from microsecond‐scale simulations
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Synthesis and in silico characterization of artificially phosphorylated glycosaminoglycans
Publication
Year 2018
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