ITS1 and ITS2 sequences alignment of Oncidium Sw. species - Open Research Data - Bridge of Knowledge

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ITS1 and ITS2 sequences alignment of Oncidium Sw. species

wersja 1.1

Description

Comparison of internal transcribed spacer ( ITS1; ITS2) sequences of 40 species of Oncidium S..w. Alignment was created using Clustal Omega  ver.1.2.4 in SnapGene software 7.1.1.   

Consensus Threshold: >50%,  Compare to: the consensus

Samples were obtained from  Department of Plant Taxonomy and Nature Conservation, University of Gdańsk. 

The list of samples:

O.baueri, O.bifolium, O.cheirophorum, O.chrysomorphum, O.clorolericus, O.crispum, O.croesus, O.edwallii, O.endocharis, O.excavatum, O.hastilabium, O.heteranthum, O.hookerii, O.hyphaematicum, O.incurvum, O.leucochilum, O.longipes , O.macrorhynchum, O.maculatum, O.mandoni, O.meirax, O.nubigenum, O.obryzatum, O.ochmatochilum, O.odoratum, O.ornithorhynchum, O.pardothyrsus, O.phalenopsis, O.phymatochilum, O.planilabre, O.pulvinatum, O.sarcodes, O.sphegiferum, O.tipuloides, O.toachicum, O.warscewiczii, O.widgrenii, O.altissimum, O.lineoligerum

Ver 1.1 cointains information about isolation procedures and PCR protocols. 

Dataset file

ITS-Oncidium.zip
21.9 kB, S3 ETag 62fb2001973fbe2702a997233e0fd79b-1, downloads: 49
The file hash is calculated from the formula
hexmd5(md5(part1)+md5(part2)+...)-{parts_count} where a single part of the file is 512 MB in size.

Example script for calculation:
https://github.com/antespi/s3md5
download file ITS-Oncidium.zip

File details

License:
Creative Commons: by 4.0 open in new tab
CC BY
Attribution

Details

Year of publication:
2024
Verification date:
2024-03-28
Dataset language:
English
Fields of science:
  • biological sciences (Natural sciences)
DOI:
DOI ID 10.34808/t4dw-2909 open in new tab
Series:
Verified by:
Gdańsk University of Technology

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Version this document has several versions

DOI 10.34808/vzdy-aq44 represents the latest version of the data.

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