matK sequences alignment of Oncidium Sw. species - Open Research Data - Bridge of Knowledge

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matK sequences alignment of Oncidium Sw. species

wersja 1.1

Description

Comparison of matK gene sequences of 28 species of Oncidium Sw..  Alignment was created using Clustal Omega ver.1.2.4 in SnapGene software 7.1.1.   

Consensus Threshold: >50%,  Compare to: the consensus

Samples were obtained from the Department of Plant Taxonomy and Nature Conservation, University of Gdańsk. 

The list of samples:

O.sphacelatum, O.odoratum, O.croesus, O.longipes, O.plymotodium, O.hastatum_2, O.edwallii, O.pulvinatum, O.heteranthum, O.bauert, O.incuvum, O.lineoligerum, O.maculatum, O.hastilabium, O.leucochilum, O.toachicum, O.altissimum, O.warscewicit, O.endocharis, O.tipuloides, O.obryzatum, O.ochmatochilum, O.pardothyrsus, O.planilabre, O.hyphaematicum:, O.cheirophorum, O.macrorhynchum, O.ornithorhynchum

Ver 1.1 cointains information about isolation procedures and PCR protocols. 

 

Dataset file

MatK_Oncidium.zip
34.9 kB, S3 ETag 40bd6abce4954beed9a5482abe256220-1, downloads: 51
The file hash is calculated from the formula
hexmd5(md5(part1)+md5(part2)+...)-{parts_count} where a single part of the file is 512 MB in size.

Example script for calculation:
https://github.com/antespi/s3md5
download file MatK_Oncidium.zip

File details

License:
Creative Commons: by 4.0 open in new tab
CC BY
Attribution

Details

Year of publication:
2024
Verification date:
2024-03-28
Dataset language:
English
Fields of science:
  • biological sciences (Natural sciences)
DOI:
DOI ID 10.34808/cbv0-sy07 open in new tab
Series:
Verified by:
Gdańsk University of Technology

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Version this document has several versions

DOI 10.34808/wq8k-wj90 represents the latest version of the data.

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