Mechanism of antifreeze protein functioning and the “anchored clathrate water” concept

Jan Zielkiewicz

doi:10.1063/5.0158590

Mechanism of antifreeze protein functioning and the “anchored clathrate water” concept

Abstract

In liquid water, there is a natural tendency to form aggregates that consist of water molecules linked by hydrogen bonds. Such spontaneously formed aggregates are surrounded by a "sea" of disordered water molecules, with both forms remaining in equilibrium. The process of creating water aggregates also takes place in the solvation water of proteins, but in this case the interactions of water molecules with the protein surface shift the equilibrium of the process. In this paper, we analyze the structural properties of the solvation water in antifreeze proteins (AFPs). The results of molecular dynamics analysis with the use of various parameters related to the structure of solvation water on the protein surface are presented. We found that in the vicinity of the active region responsible for the binding of AFPs to ice, the equilibrium is clearly shifted towards the formation of "ice-like aggregates", and the solvation water has a more ordered ice-like structure. We have demonstrated that a reduction in the tendency to create "ice-like aggregates" results in a significant reduction in the antifreeze activity of the protein. We conclude that shifting the equilibrium in favor of the formation of "ice-like aggregates" in the solvation water in the active region is a prerequisite for the biological functionality of AFPs, at least for AFPs having a well-defined ice binding area. Also, our results fully confirm the validity of the "anchored clathrate water" concept, formulated by Garnham et al. (PNAS, (2011), 108, 7363).

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Jan Zielkiewicz prof. dr hab. inż.

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DOI:: Digital Object Identifier (open in new tab) 10.1063/5.0158590
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Articles

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artykuły w czasopismach

Published in:

JOURNAL OF CHEMICAL PHYSICS no. 159,
ISSN: 0021-9606

Language:

English

Publication year:

2023

Bibliographic description:

Zielkiewicz J.: Mechanism of antifreeze protein functioning and the “anchored clathrate water” concept// JOURNAL OF CHEMICAL PHYSICS -Vol. 159,iss. 8 (2023), s.085101-

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