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Search results for: EVOLUTIONARY ALGORITHMS MODIFICATION
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t-SNE Highlights Phylogenetic and Temporal Patterns of SARS-CoV-2 Spike and Nucleocapsid Protein Evolution
PublicationWe propose applying t-distributed stochastic neighbor embedding to protein sequences of SARS-CoV-2 to construct, visualize and study the evolutionary space of the coronavirus. The basic idea is to explore the COVID-19 evolution space by using modern manifold learning techniques applied to evolutionary distances between variants. Evolutionary distances have been calculated based on the structures of the nucleocapsid and spike proteins.
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Comparison of various speech time-scale modificartion methods
PublicationThe objective of this work is to investigate the influence of the different time-scale modification (TSM) methods on the quality of the speech stretched up using the designed non-uniform real-time speech time-scale modification algorithm (NU-RTSM). The algorithm provides a combination of the typical TSM algorithm with the vowels, consonants, stutter, transients and silence detectors. Based on the information about the content and...
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Generating optimal paths in dynamic environments using RiverFormation Dynamics algorithm
PublicationThe paper presents a comparison of four optimisation algorithms implemented for the purpose of finding the shortest path in static and dynamic environments with obstacles. Two classical graph algorithms –the Dijkstra complete algorithm and A* heuristic algorithm – were compared with metaheuristic River Formation Dynamics swarm algorithm and its newly introduced modified version. Moreover, another swarm algorithm has been compared...
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Reconstruction of 3D structure of positive corona streamer by local methods
PublicationThe computer algorithms were used for reconstruction of streamer 3D structure. We propose the 3D tree structure model of corona discharge streamer composed with nodes and edges between chosen couples of nodes, which enables easy computation of some important parameters ofstreamers. The 3D model can be derived directly from two projection images by global methods like evolutionary searching or particle simulations. In this paper...
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Analyzing sets of phylogenetic trees obtained from bayesian MCMC process using topology metrics
PublicationThe reconstruction of evolutionary trees is one of the primary objectives in phylogenetics. Such a tree represents historical evolutionary relationship between different species or organisms. Tree comparisons are used for multiple purposes, from unveiling the history of species to deciphering evolutionary associations amongorganisms and geographical areas.In the paper, we describe a general method for comparing hylogenetic trees....
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Decisional DNA and Optimization Problem
PublicationMany researchers have proved that Decisional DNA (DDNA) and Set of Experience Knowledge Structure (SOEKS or SOE) is a technology capable of gathering information and converting it into knowledge to help decision-makers to make precise decisions in many ways. These techniques have a feature to combine with different tools, such as data mining techniques and web crawlers, helping organization collect information from different sources...
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Analyzing sets of phylogenetic trees using metrics
PublicationThe reconstruction of evolutionary trees is one of the primary objectives in phylogenetics. Such a tree represents historical evolutionary relationships between different species or organisms. Tree comparisons are used for multiple purposes, from unveiling the history of species to deciphering evolutionary associations among organisms and geographical areas. In this paper, we describe a general method for comparing phylogenetictrees...
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Non-Coaxially Rotating Motion in Casson Martial along with Temperature and Concentration Gradients via First-Order Chemical Reaction
PublicationThe effect of non-coaxial rotation on the transport of mass subjected to first-order chemical reaction is studied analytically. The effects of thermal radiation, buoyancy, constructive and destructive chemical reactions along with Casson fluid in rotating frame are discussed. Time evolution of primary and secondary velocities, energy and solute particles are analyzed. The behavior of flow under the variation of intensity of magnetic...
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An Improvement of Global Complex Roots and Poles Finding Algorithm for Propagation and Radiation Problems
PublicationAn improvement of the recently developed global roots finding algorithm has been proposed. The modification allows to shorten the computational time by reducing the number of function calls. Moreover, both versions of the algorithms (standard and modified) have been tested for numerically defined functions obtained from spectral domain approach and field matching method. The tests have been performed for three simple microwave...
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A station strategy to deter backoff attacks in IEEE 802.11 LANs
PublicationDla konstrukcji strategii zapobiegającej atakom na mechanizm odczekania w sieciach lokalnych IEEE 802.11 zastosowano wybór konfiguracji MAC sterowany przez liczniki etapów gry z losowymi wartościami początkowymi. Wykazano, że przy pewnych warunkach nałożonych na rozkady prawdopodobieństwa liczników standardowe ustawienia parametrów MAC stają się punktem doskonałej równowagi strategicznej.
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Gender approach to multi-objective optimization of detection systems by pre-selection of criteria
PublicationA novel idea of performing evolutionary computations for solving highly-dimensional multi-objective optimization (MOO) problems is proposed. The information about individual genders is applied. This information is drawn out of the fitness of individuals and applied during the parental crossover in the evolutionary multi-objective optimization (EMO) processes. The paper introduces the principles of the genetic-gender approach (GGA)...
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Gender approach to multi-objective optimization of detection systems by pre-selection of criteria
PublicationA novel idea of performing evolutionary computations for solving highly-dimensional multi-objective optimization (MOO) problems is proposed. The information about individual genders is applied. This information is drawn out of the fitness of individuals and applied during the parental crossover in the evolutionary multi-objective optimization (EMO) processes. The paper introduces the principles of the genetic-gender approach (GGA)...
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Gender approach to multi-objective optimization of detection systems by pre-selection of criteria
PublicationA novel idea of performing evolutionary computations for solving highly-dimensional multi-objective optimization (MOO) problems is proposed. The information about individual genders is applied. This information is drawn out of the fitness of individuals and applied during the parental crossover in the evolutionary multi-objective optimization (EMO) processes. The paper introduces the principles of the genetic-gender approach (GGA)...
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On deterministic procedures for low-cost multi-objective design optimization of miniaturized impedance matching transformers
PublicationPurpose This paper aims to investigate deterministic strategies for low-cost multi-objective design optimization of compact microwave structures, specifically, impedance matching transformers. The considered methods involve surrogate modeling techniques and variable-fidelity electromagnetic (EM) simulations. In contrary to majority of conventional approaches, they do not rely on population-based metaheuristics, which permit lowering...
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Biomedical Engineering at Gdansk University of Technology
PublicationShort history of education in Biomedical Engineering at Gdansk University of Technology is presented. The last initiative- implementation of the new programme, Biomedical Engineering - an interfaculty direction of study, supported by a grantfinanced by the European Social Fund is presented. Curricula of four specializations: Chemistry in Medicine, run by the Facultyof Chemistry; Electronics in Medicine and Informatics in Medicine,...
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Proteomic profiling of exosomes derived from pancreatic beta-cells cultured under hyperglycemia
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Reconfiguring Minimum Dominating Sets in Trees
PublicationWe provide tight bounds on the diameter of γ-graphs, which are reconfiguration graphs of the minimum dominating sets of a graph G. In particular, we prove that for any tree T of order n ≥ 3, the diameter of its γ-graph is at most n/2 in the single vertex replacement adjacency model, whereas in the slide adjacency model, it is at most 2(n − 1)/3. Our proof is constructive, leading to a simple linear-time algorithm for determining...
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A Monte Carlo Strategy to simulate Positrons and Positronium in biological Materials
PublicationWe present an algorithm for Monte Carlo simulations of positron tracks in biological materials. The algorithm takes into account the cross-section data for elastic and inelastic collisions between positrons and molecules and processes like direct annihilation, ionization and positronium formation. In the case of positronium formation, the algorithm considers the interactions of positronium with molecules. The algorithm can be used...
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Genetic Programming for Workload Balancing in the Comcute Grid System
PublicationA genetic programming paradigm is implemented for reliability optimization in the Comcute grid system design. Chromosomes are generated as the program functions and then genetic operators are applied for finding Pareto-suboptimal task assignment and scheduling. Results are compared with outcomes obtained by an adaptive evolutionary algorithm.
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Reduced-cost design closure of antennas by means of gradient search with restricted sensitivity update
PublicationDesign closure, i.e., adjustment of geometry parameters to boost the performance, is a challenging stage of antenna design process. Given complexity of contemporary structures, reliable parameter tuning requires numerical optimization and can be executed using local algorithms. Yet, EM-driven optimization is a computationally expensive endeavour and reducing its cost is highly desirable. In this paper, a modification of the trust-region...
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Optimal selection of input features and an acompanying neural network structure for the classification purposes - skin lesions case study
PublicationMalignant melanomas are the most deadly type of skin cancers however detected early enough give a high chances for successful treatment. The last years saw the dynamic growth of interest of automatic computer-aided skin cancer diagnosis. Every month brings new research results on new approaches to this problem, new methods of preprocessing, new classifiers, new ideas to follow etc. In particular, the rapid development of dermatoscopy,...
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Composite Polyurethane-Polylactide (PUR/PLA) Flexible Filaments for 3D Fused Filament Fabrication (FFF) of Antibacterial Wound Dressings for Skin Regeneration
Publicationhis paper addresses the potential application of flexible thermoplastic polyurethane (TPU) and poly(lactic acid) (PLA) compositions as a material for the production of antibacterial wound dressings using the Fused Filament Fabrication (FFF) 3D printing method. On the market, there are medical-grade polyurethane filaments available, but few of them have properties required for the fabrication of wound dressings, such as flexibility...
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The particle method for simulation of self-organization phenomena
PublicationThe aim of the work was to design, implement, and use, in a number of experiments, an abstract software environment (an artificial world)suitable for modelling systems consisting of many moving and interactingobjects distributed in space. The environment, named DigiHive, is directed towards modeling of complex systems manifested by processes of self-organization, self-reproduction and self modifications. The environment is mainly...
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Reconstruction of 3D image of corona discharge streamer
PublicationIn this paper, the method of reconstruction of the 3D structure of streamers in DC positive corona discharge in nozzle-to-plate electrode configuration is presented. For reconstructing of 3D image of corona discharge streamer we propose a stereographical method, where streamers are observed from several directions simultaneously. The multi-directional observation enabled to obtain fine positional coordinates of streamers for a...
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Reactive extrusion of biodegradable aliphatic polyesters in the presence of free-radical-initiators: A review
PublicationNowadays, growing attention is being paid to the environment and sustainability, what fully justified research works focused on modification of biodegradable polymers and their composites. In this field of research reactive extrusion seems to be the most promising approach, which fits well to sustainable development strategy. In In the present work, the in-situ modification of biodegradable aliphatic polyesters and the compatibilization...
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Multiobjective Aerodynamic Optimization by Variable-Fidelity Models and Response Surface Surrogates
PublicationA computationally efficient procedure for multiobjective design optimization with variable-fidelity models and response surface surrogates is presented. The proposed approach uses the multiobjective evolutionary algorithm that works with a fast surrogate model, obtained with kriging interpolation of the low-fidelity model data enhanced by space-mapping correction exploiting a few high-fidelity training points. The initial Pareto...
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Modelling of some stealth features for a small navy ship at the concept design stage - part II
PublicationIn the paper a few problems associated with modelling the basic stealth features for a small ship at the concept design stage are introduced. One problem concerns the modification of the immersed ship hull using the rapid change of the ship loading condition. The second is associated with the modification of the ship boundary layer by the hull skin cover. The other stealth features of the ship are not presented in this paper. The...
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Histogram of Oriented Gradients with Cell Average Brightness for Human Detection
PublicationA modification of the descriptor in a human detector using Histogram of Oriented Gradients (HOG) and Support Vector Machine (SVM) is presented. The proposed modification requires inserting the values of average cell brightness resulting in the increase of the descriptor length from 3780 to 3908 values, but it is easy to compute and instantly gives ≈ 25% improvement of the miss rate at 10‒4 False Positives Per Window (FPPW). The...
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Surface modifications of ti and its alloys
PublicationThis article reviews the various surface modification techniques pertaining to titanium and titanium alloys including physical treatment, mechanical treatment, and chemical and electrochemical treatment. The proper surface modification expands the use of titanium and its alloys in the biomedical field for long-term implants retaining the excellent properties of substrate material and improving the specific surface properties required...
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Modelowanie reorganizacji ruchu w transporcie szynowym zwiększające efektywne wykorzystanie energii z hamowania odzyskowego
PublicationWe wstępie artykułu przedstawiono metody wykorzystania energii elektrycznej odzyskanej w procesie hamowania elektrodynamicznego. Szczególną uwagę zwrócono na metodę zwrotu odzyskanej energii do sieci jezdnej i wykorzystania jej przez inne pojazdy szynowe, której efektywne zastosowanie niejednokrotnie wymaga reorganizacji ruchu. W pracy przeanalizowano opisany w literaturze model organizacji ruchu w transporcie szynowym, który uwzględnia...
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Modelling of some stealth features for a small navy ship at the concept design stage.
PublicationIn this paper the basic research problems associated with modelling the basic stealth features for a small navy ship at the concept design stage are introduced. Amongst the major stealth features considered are: the modification of the immersed ship hull form by a rapid change of the ship loading condition, and modification of the ship boundary layer by the hull skin cover. The other stealth features of the ship are not presented...
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Solving highly-dimensional multi-objective optimization problems by means of genetic gender
PublicationPaper presents a computational optimization study using a genetic gender approach for solving multi-objective optimization problems of detection observers. In this methodology the information about an individual gender of all the considered solutions is applied for the purpose of making distinction between different groups of objectives. This information is drawn out of the fitness of individuals and applied during a current parental...
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Solving highly-dimensional multi-objective optimization problems by means of genetic gender
PublicationPaper presents a computational optimization study using a genetic gender approach for solving multi-objective optimization problems of detection observers. In this methodology the information about an individual gender of all the considered solutions is applied for the purpose of making distinction between different groups of objectives. This information is drawn out of the fitness of individuals and applied during a current parental...
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Power augmentation of PGE Gorzow's gas turbine by steam injection - thermodynamic overview
PublicationThe impact of steam injection upon a gas turbine and a combined power plant performance has been investigated. This article describes and summarizes possibilities of modification for current gas turbine in PGE Gorzow power plant into the Cheng cycle. Our modification deals with a thermal cycle, in which steam produced in a heat recovery steam generator is injected into the gas turbine's combustion chamber. It has been proved that...
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Machine Learning Assisted Interactive Multi-objectives Optimization Framework: A Proposed Formulation and Method for Overtime Planning in Software Development Projects
PublicationMachine Learning Assisted Interactive Multi-objectives Optimization Framework: A Proposed Formulation and Method for Overtime Planning in Software Development Projects Hammed A. Mojeed & Rafal Szlapczynski Conference paper First Online: 14 September 2023 161 Accesses Part of the Lecture Notes in Computer Science book series (LNAI,volume 14125) Abstract Software development project requires proper planning to mitigate risk and...
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The extended version of restriction analysis approach for the examination of the ability of low-molecular-weight compounds to modify DNA in a cell-free system
PublicationOne of the primary requirements in toxicology is the assessment of ability of chemicals to induce DNA covalent modification. There are several well-established methods used for this purpose such as 32P-Postlabeling or HPLC-MS. However, all of these approaches have difficult to overcome limitations, which prevents their use in genotoxin screening. Here, we describe the simple protocol exploiting specificity of restriction enzymes...
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Biophilic Design: A Trend Watch
PublicationDuring the 20th century, many people migrated to cities for employment and economic opportunities, abandoning farming and natural landscapes so their direct connection to the countryside and nature was lost. This process continues to this day with unprecedented urban growth, in fact, it’s estimated 68% of the world population will live in urban areas by 2050. Due to the evolutionary disposition of humans, when people live in an...
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Histogram of Gradients with Cell Average Intensity for Human Detection
PublicationThe modification of the descriptor in human detector using Histogram of Oriented Gradients and support vector machine is presented. The proposed modification requires inserting the average cell intensitiesresulting with the increase of the length of the descriptor from 3780 to 4200 values, but it is easy to compute and instantly gives 14-26% of miss rate improvement at 10^-4 False Positives Per Window (FPPW). The modification...
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Artificial intelligence for biomedical engineering of polysaccharides: A short overview.
PublicationThe advent of computer-aided concepts and cognitive algorithms, along with fuzzy sets and fuzzy logic thoughts, supported the idea of ‘making computers think like people’ (Lotfi A. Zadeh, IEEE Spectrum, 21 (26–32), 1984). Such a school of thought enabled the sophistication of mission-oriented...
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Detection of Face Position and Orientation Using Depth Data
PublicationIn this paper an original approach is presented for real-time detection of user's face position and orientation based only on depth channel from a Microsoft Kinect sensor which can be used in facial analysis on scenes with poor lighting conditions where traditional algorithms based on optical channel may have failed. Thus the proposed approach can support, or even replace, algorithms based on optical channel or based on skeleton...
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Artificial intelligence support for disease detection in wireless capsule endoscopy images of human large bowel
PublicationIn the work the chosen algorithms of disease recognition in endoscopy images were described and compared for theirs efficiency. The algorithms were estimated with regard to utility for application in computer system's support for digestive system's diagnostics. Estimations were achieved in an advanced testing environment, which was built with use of the large collection of endoscopy movies received from Medical University in Gdańsk....
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Five-phase induction motor drive with sine-wave filter
PublicationThe paper presents closed loop ac drive with 5 phase induction motor operating with voltage source inverter and sine wave filter. The motor supply voltages and currents have sinusoidal shape. For well known adjustable electric drives the field oriented control method with flux and speed co ntrol can be applied. In the presence of output filter both control and estimation algorithms should be modified due to sine wave filter installation....
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Evaluation of a sat-type fairness mechanism implemented in a dual-ring network
PublicationThe fairness problem was presented. Popular fairness concepts and measures were shown. The RPR fairness mechanism and the SAT mechanism were described. A modification of the SAT algorithm, adapted to the possibilities of Ethernet cards used for implementation of a dual-ring RPR-based network, was proposed. Performance of the proposed modification was measured. Jain's and Chen's fairness indexes were calculated. Effectiveness comparison...
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On optimal tracking of rapidly varying telecommunication channels
PublicationWhen parameters of mobile telecommunication channels change rapidly, classical adaptive filters, such as exponentially weighted least squares algorithms or gradient algorithms, fail to estimate them with sufficient accuracy. In cases like this, one can use identification methods based on explicit models of parameter changes such as the method of basis functions (BF). When prior knowledge about parameter changes is available the...
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Komputerowa weryfikacja układów cyfrowych CMOS utworzonych z podukładów zasilanych ze źródeł o różnych wartościach napięcia
PublicationW pracy zaprezentowano wyniki komputerowej weryfikacji cyfrowego układu CMOS utworzonego z klastrów, z których każdy jest zasilany odpowiednio malejącymi wartościami napięć. Zbiór klastrów został utworzony przy pomocy algorytmu ECA (Evolutionary Clustering Algorithm) dla potrzeb redukcji mocy pobieranej ze źródła zasilającego. Otrzymane rozwiązanie, charakteryzujące się zmniejszeniem zapotrzebowania na moc, nie powoduje pogorszenia...
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Real-Time Bleeding Detection in Gastrointestinal Tract Endoscopic Examinations Video
PublicationThe article presents a novel approach to medical video data analysis and recognition of bleedings. Emphasis has been put on adapting pre-existing algorithms dedicated to the detection of bleedings for real-time usage in a medical doctor’s office during an endoscopic examination. A real-time system for analyzing endoscopic videos has been designed according to the most significant requirements of medical doctors. The main goal of...
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Molecular and structural basis of inner core lipopolysaccharide alterations in Escherichia coli: incorporation of glucuronic acid and phosphoethanolamine in the heptose region.
PublicationIt is well established that lipopolysaccharide (LPS) often carries nonstoichiometric substitutions in lipid A and in the inner core. In this work, the molecular basis of inner core alterations and their physiological significance are addressed. A new inner core modification of LPS is described, which arises due to the addition of glucuronic acid on the third heptose with a concomitant loss of phosphate on the second heptose. This...
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Restoration and preservation of the reinforced concrete poles of fence at the former Auschwitz concentration and extermination camp
PublicationThe objective of this study was to assess the present state of the reinforced concrete poles of fence at the former Auschwitz I and Auschwitz II-Birkenau concentration and extermination camp. The poles were subjected to renovation about 10 years ago. After this time some deficiencies of applied renovation method were noticed. Cracks appeared between fresh and original part of concrete cover. Analysis of the reasons of these failures...
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Restoration and preservation of the reinforced concrete poles of fence at the former Auschwitz concentration and extermination camp
PublicationThe objective of this study was to assess the present state of the reinforced concrete poles of fence at the former Auschwitz I and Auschwitz II-Birkenau concentration and extermination camp. The poles were subjected to renovation about 10 years ago. After this time some deficiencies of applied renovation method were noticed. Cracks appeared between fresh and original part of concrete cover. Analysis of the reasons of these failures...
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Optimised Allocation of Hard Quality Sensors for Robust Monitoring of Quality in Drinking Water Distribution Systems
PublicationA problem of optimised placement of the hard quality sensors in Drinking Water Distribution Systems for robust quality monitoring is formulated. Two numerical algorithms to solve the problem are derived. The optimality is meant as achieving a desired trade off between the sensor capital and maintenance costs and resulting robust estimation accuracy of the monitoring algorithm. The robust estimation algorithm recently developed...