Search results for: LEFSCHETZ NUMBERS · NEWTON SEQUENCES · DOLD–FERMAT SEQUENCES · GENERATING SEQUENCES
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Dekodowanie kodów iterowanych z użyciem sieci neuronowej
PublicationNadmiarowe kody iterowane są jedną z prostych metod pozyskiwania długich kodów korekcyjnych zapewniających dużą ochronę przed błędami. Jednocześnie, chociaż ich podstawowy iteracyjny dekoder jest prosty koncepcyjnie oraz łatwy w implementacji, to nie jest on rozwiązaniem optymalnym. Poszukując alternatywnych rozwiązań zaproponowano, przedstawioną w pracy, strukturę dekodera tego typu kodów wspomaganą przez sieci neuronowe. Zaproponowane...
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Loop-mediated isothermal amplification (LAMP) as a diagnostic tool in detection of infectious diseases
PublicationLoop-mediated isothermal amplification (LAMP) is a gene amplification method which amplifies DNA with high specificity and efficiency under isothermal conditions. Because of its rapidity and simplicity, it is a valuable diagnostic tool in the early detection and identification of infectious diseases. LAMP method is based on the use of a set of four to six specially designed primers spanning six to eight distinct sequences on the...
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SOME CONVERGENCE PROPERTIES OF THE SUM OF GAUSSIAN FUNCTIONALS
PublicationIn the paper, some aspects of the convergence of series of dependent Gaussian sequences problem are solved. The necessary and sufficient conditions for the convergence of series of centered dependent indicators are obtained. Some strong convergence results for weighted sums of Gaussian functionals are discussed.
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Performance of the Direct Sequence Spread Spectrum Underwater Acoustic Communication System with Differential Detection in Strong Multipath Propagation Conditions
PublicationThe underwater acoustic communication (UAC) operating in very shallow-water should ensure reliable transmission in conditions of strong multipath propagation, significantly disturbing the received signal. One of the techniques to achieve this goal is the direct sequence spread spectrum (DSSS) technique, which consists in binary phase shift keying (BPSK) according to a pseudo-random spreading sequence. This paper describes the DSSS...
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Antipsychotic drug prescription sequence analysis in relation to death occurrence and cardiometabolic drug usage: A retrospective longitudinal study
PublicationThe potential role of antipsychotics in increasing cardiovascular risk of mortality is still debated. The aim of this study was to assess the death risk associated with sequences of first-generation antipsychotic (FGA) and second-generation antipsychotic (SGA) prescriptions, including clozapine and lithium, and drugs for cardiometabolic diseases. We conducted a retrospective longitudinal analysis involving 84,881 patients who received...
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Periodic expansion in determining minimal sets of Lefschetz periods for Morse–Smale diffeomorphisms
PublicationWe apply the representation of Lefschetz numbers of iterates in the form of periodic expansion to determine the minimal sets of Lefschetz periods of Morse–Smale diffeomorphisms. Applying this approach we present an algorithmic method of finding the family of minimal sets of Lefschetz periods for Ng, a non-orientable compact surfaces without boundary of genus g. We also partially confirm the conjecture of Llibre and Sirvent (J Diff...
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Visual Traffic Noise Monitoring in Urban Areas
PublicationThe paper presents an advanced system for railway and road traffic noise monitoring in metropolitan areas. This system is a functional part of a more complex solution designed for environmental monitoring in cities utilizing analyses of sound, vision and air pollution, based on a ubiquitous computing approach. The system consists of many autonomous, universal measuring units and a multimedia server, which gathers, processes and...
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Solubilization of keratins and functional properties of their isolates and hydrolysates
PublicationThe keratinous wastes of the textile industry and poultry slaughterhouses may be used as sources of soluble keratins or hydrolysates. This review presents methods for processing raw keratin-based materials into bioproducts with functional and bioactive properties suitable for biomedical, cosmetic, food, and agricultural applications. Soluble keratin can be obtained by thermal treatment in some organic solvents, reduction, or oxidation...
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Impact of Shifting Time-Window Post-Processing on the Quality of Face Detection Algorithms
PublicationWe consider binary classification algorithms, which operate on single frames from video sequences. Such a class of algorithms is named OFA (One Frame Analyzed). Two such algorithms for facial detection are compared in terms of their susceptibility to the FSA (Frame Sequence Analysis) method. It introduces a shifting time-window improvement, which includes the temporal context of frames in a post-processing step that improves the...
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Simulation of Direct-Sequence Spread Spectrum Data Transmission System for Reliable Underwater Acoustic Communications
PublicationUnderwater acoustic communication (UAC) system designers tend to transmit as much information as possible, per unit of time, at as low as possible error rate. It is a particularly difficult task in a shallow underwater channel in which the signal suffers from strong time dispersion due to multipath propagation and refraction phenomena. The direct-sequence spread spectrum technique (DSSS) applied successfully in the latest standards...
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ArchBGal32cB 441Glu mutein gene analysis dataset
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A Reduction Method for Bathymetric Datasets that Preserves True Coastal Water Geodata
PublicationWater areas occupy over 70 percent of the Earth’s surface and are constantly subject to research and analysis. Often, hydrographic remote sensors are used for such research, which allow for the collection of information on the shape of the water area bottom and the objects located on it. Information about the quality and reliability of the depth data is important, especially during coastal modelling. In-shore areas are liable...
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Sequencing results and other data presented in article published in Applied Microbiology and Biotechnology
Open Research DataThis folder contains sequences of the strains SzA14, SzA16 and SzB3. Other data presented in the article published in Applied Microbiology and Biotechnology have been also included.
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Evaluation of Respiration Rate Using Thermal Imaging in Mobile Conditions
PublicationRespiratory rate is very important vital sign that should be measured and documented in many medical situations. The remote measurement of respiration rate can be especially valuable for medical screening purposes (e.g. severe acute respiratory syndrome (SARS), pandemic influenza, etc.). In this chapter we present a review of many different studies focused on the measurements and estimation of respiration rate using thermal imaging...
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New method of IEEE 802.15.4a UWB Impulse Radio Spectrum Shaping
PublicationThis paper presents a new technique of IEEE 802.15.4a ultra-wideband signal spectrum control, based on changes in sequences of transmitted pulses with very short duration time. Basic parameters of UWB signal and outline of proposed spectrum shaping methods are briefly described. The main part of the paper presents influence of signal and algorithms parameters on the results of spectrum shaping.
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Phylogenetic analysis of Oncidieae subtribe - matK plastid region
Open Research DataThe dataset contains alignment and consensus matrix files, and results of phylogenetic analysis of plastid matK region from 186 orchid species considered to belong Oncidieae subtribe. Sequences were assessed from NCBI GeneBank (list of all records with identifiers in the separate file)
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Phylogenetic analysis of Oncidieae subtribe - ITS1-5,8S-ITS2
Open Research DataThe dataset contains alignment and consensus matrix files, and results of phylogenetic analysis of ITS1- 5,8S-ITS2 region from 186 orchid species considered to belong Oncidieae subtribe. Sequences were assessed from NCBI GeneBank (list of all records with identifiers in the separate file)
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Fixed point indices of iterates of a low-dimensional diffeomorphism at a fixed point which is an isolated invariant set
PublicationLet f be an R^n-diffeomorphism, where n = 2, 3, for which {0} is an isolated invariant set. We determine all possible forms of the sequences of fixed point indices of iterates of f at 0, {ind(f n, 0)}_n, confirming in R3 the conjecture of Ruiz del Portal and Salazar (J Differ Equ 249, 989–1013, 2010).
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IEEE 802.15.4a Impulse Radio Spectrum Shaping by Changes in Pulse Sequence
PublicationThis paper presents one of possible techniques of IEEE 802.15.4a ultra-wideband signal spectrum control, based on changes in sequences of transmitted pulses with very short duration time. This technique can reduce probability of mutual interferences between new ultra-wideband and existing narrowband devices, which may be helpful in further studies on allowing UWB transmission in wider range of spectrum in theEuropean Union.
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t-SNE Highlights Phylogenetic and Temporal Patterns of SARS-CoV-2 Spike and Nucleocapsid Protein Evolution
PublicationWe propose applying t-distributed stochastic neighbor embedding to protein sequences of SARS-CoV-2 to construct, visualize and study the evolutionary space of the coronavirus. The basic idea is to explore the COVID-19 evolution space by using modern manifold learning techniques applied to evolutionary distances between variants. Evolutionary distances have been calculated based on the structures of the nucleocapsid and spike proteins.
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Optimized Space-Vector Modulation Schemes for Five-Phase Precision Low-Speed Drives with Minimizing the Stator Current Ripple
PublicationOne of the main ways to improve the quality of a precision electric drive is minimization of the stator current pulsations generated by the voltage inverter. The solution of this problem can be achieved by using of multiphase inverters, as well as improving control algorithms. This paper considers the influence of the space-vector modulation algorithm with different switching sequences of basic vectors on the stator current pulsations...
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Calculation of Induced Sheath Voltages in Power Cables – Single Circuit System versus Double Circuit System
PublicationThis paper presents comparison of values of induced sheath voltages in power cable metallic sheaths when one or two cables per phase are used. Calculation of voltages is performed for various phase sequences of the power cables. Three types of the sheaths bonding and earthing are considered. Shock hazard and voltage stress of non-metallic outer sheath of cables are evaluated. The proposed, optimal configuration of the power cable...
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Phase Transition in a Sequence-Structure Channel
PublicationWe study an interesting channel which maps binary sequences to self-avoiding walks in the two-dimensional grid, inspired by a model of protein folding from statistical physics. The channel is characterized by a Boltzmann/Gibbs distribution with a free parameter corresponding to temperature. We estimate the conditional entropy between the input sequence and the output fold, giving an upper bound which exhibits an unusual phase transition...
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Fully Adaptive Savitzky-Golay Type Smoothers
PublicationThe problem of adaptive signal smoothing is consid-ered and solved using the weighted basis function approach. Inthe special case of polynomial basis and uniform weighting theproposed method reduces down to the celebrated Savitzky-Golaysmoother. Data adaptiveness is achieved via parallel estimation.It is shown that for the polynomial and harmonic bases andcosinusoidal weighting sequences, the competing signal estimatescan be computed...
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Introducing a Computational Method to Retrofit Damaged Buildings under Seismic Mainshock-Aftershock Sequence
PublicationRetrofitting damaged buildings is a challenge for engineers, since commercial software does not have the ability to consider the local damages and deformed shape of a building resulting from the mainshock record of an earthquake before applying the aftershock record. In this research, a computational method for retrofitting of damaged buildings under seismic mainshock-aftershock sequences is proposed, and proposed computational...
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FFT spectrum based matching algorithm for activedynamic thermography
PublicationIn Active Dynamic thermography (ADT) sequences of consecutive temperature distributions are analyzed. In biomedical applications of ADT, the problems of a patient's movements in front of a thermal camera should be eliminated before data analysis. Complete mechanical stabilization of the patients is impossible due to natural voluntary and involuntary moves caused by pulse breathing, etc. This paper presents a simple and efficient...
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Fixed point indices of iterated smooth maps in arbitrary dimension
PublicationWe give a complete description of possible sequences ofindices of iterations of f at an isolated fixed point, answering inaffirmative the Chow, Mallet-Paret and Yorke conjecture posed in[S.N. Chow, J. Mallet-Parret, J.A. Yorke, A periodic point index whichis a bifurcation invariant, in: Geometric Dynamics, Rio de Janeiro,1981, in: Lecture Notes in Math., vol. 1007, Springer, Berlin, 1983,pp. 109-131].
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EASY ACCESS TOOL FOR SMALL INTERFERING RNA (siRNA) DATA
PublicationFor many decades it was an accepted dogma of molecular genetics that the expression of genes is a “one-way-road” leading only in one direction from DNA to RNA to proteins. Recent discoveries in modern molecular genetics have challenged this dogma showing that specific RNA molecules play a central role in controlling the activity of genes by changing the structure of DNA sequences, targeting other RNAs for degradation or blocking...
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Evaluating Accuracy of Respiratory Rate Estimation from Super Resolved Thermal Imagery
PublicationNon-contact estimation of Respiratory Rate (RR) has revolutionized the process of establishing the measurement by surpassing some issues related to attaching sensors to a body, e.g. epidermal stripping, skin disruption and pain. In this study, we perform further experiments with image processing-based RR estimation by using various image enhancement algorithms. Specifically, we employ Super Resolution (SR) Deep Learning (DL) network...
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Firing map for periodically and almost-periodically driven integrate-and-fire models: a dynamical systems approach
PublicationWe consider the Leaky Integrate-and-Fire and Perfect Integrator models of neuron’s dynamics with the input function being periodic and almost-periodic (in the sense of Stepanov). In particular we analyze properties and dynamics of the so-called firing map, which iterations give timings of consecutive spikes of a neuron. In case of a periodic input function we provide a detailed description of the sequence of interspike-intervals,...
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Primary role identification in e-mail networks using pattern subgraphs and sequence diagrams
PublicationSocial networks often forms very complex structures that additionally change over time. Description of actors' roles in such structures requires to take into account this dynamics reflecting behavioral characteristics of the actors. A role can be defined as a sequence of different types of activities. Various types of activities are modeled by pattern subgraphs, whereas sequences of these activities are modeled by sequence diagrams....
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Reliability of Pulse Measurements in Videoplethysmography
PublicationReliable, remote pulse rate measurement is potentially very important for medical diagnostics and screening. In this paper the Videoplethysmography was analyzed especially to verify the possible use of signals obtained for the YUV color model in order to estimate the pulse rate, to examine what is the best pulse estimation method for short video sequences and finally, to analyze how potential PPG-signals can be distinguished from...
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Why do G-quadruplexes dimerize through the 5’-ends? Driving forces for G4 DNA dimerization examined in atomic detail
PublicationG-quadruplexes (G4) are secondary structures formed by guanine-rich nucleic acid sequences and shown to exist in living cells where they participate in regulation of gene expression and chromosome maintenance. G-quadruplexes with solvent-exposed guanine tetrads show the tendency to associate together through cofacial stacking, which may be important for packaging of G4-forming sequences and allows for the design of higher-order...
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Vident-synth: a synthetic intra-oral video dataset for optical flow estimation
Open Research DataWe introduce Vident-synth, a large dataset of synthetic dental videos with corresponding ground truth forward and backward optical flows and occlusion masks. It can be used for:
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A quaternion-based modified feistel cipher for multimedia transmission
PublicationIn this paper a quaternion-based modified Feistel Cipher is proposed. The algorithm is based on the scheme proposed by Sastry and Kumar (2012). Our algorithm uses special properties of quaternions to perform rotations of data sequences in 3D space for each of the cipher rounds. The plaintext (image in gray-tone) is divided into two square matrices of equal size which consist of Lipschitz quaternions. A modular arithmetic was implemented...
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Face detection algorithms evaluation for the bank client verification
PublicationResults of investigation of face detection algorithms in the video sequences are presented in the paper. The recordings were made with a miniature industrial USB camera in real conditions met in three bank operating rooms. The aim of the experiments was to check the practical usability of the face detection method in the biometric bank client verification system. The main assumption was to provide as much as possible user interaction...
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Relation of the polymorphism of cyp51A sequence and the susceptibility of Aspergillus fumigatus isolates to triazoles determined by commercial gradient test (Etest) and by reference methods
PublicationThe aim of this study was to evaluate the accuracy of commercial gradient test (Etest) in the detection of triazole resistant Aspergillus fumigatus isolates using reference microdilution methods and the analysis of sequences of the cyp 51A gene. The study was performed on twenty clinical isolates which were identified as Aspergillus fumigatus based on the DNA sequences of the ITS1-2 fragment of ribosomal DNA and the β-tubulin gene,...
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ISSUES OF CLASSIFICATION FUNCTION CONTINUITY IN ENDOSCOPIC VIDEO CLASSIFICATION
PublicationIn the article a new way of analyzing the properties of feature vector functions (FVF) and classiers of images in a video stream is proposed. The general idea is based on focusing of the perceived continuity of the FVF and classier functions. Issues related to creating an exact mathematical model are discussed and a simplied solution is proposed. An exemplary algorithm is evaluated on three exemplary video sequences. The acquired...
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Inequivalence of entanglement, steering, and Bell nonlocality for general measurements
PublicationEinstein-Podolsky-Rosen steering is a form of inseparability in quantum theory commonly acknowledged to be intermediate between entanglement and Bell nonlocality. However, this statement has so far only been proven for a restricted class of measurements, namely, projective measurements. Here we prove that entanglement, one-way steering, two-way steering, and nonlocality are genuinely different considering general measurements,...
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Quasi-resonant DC-link voltage inverter with enhanced zero-voltage switching control
PublicationA new topology modification of the parallel quasi-resonant circuit for a dc-link voltage inverter enables regulation of the zero voltage dc-link subperiods and the dc-link voltage gradient settings. The proposed circuit is based on four MOSFET switches with free-wheeling diodes for controlled quasi-resonant recharging between L-C tank in order to assure inverter zero voltage switching (ZVS) conditions. Design optimization of the...
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Augmenting digital documents with negotiation capability
PublicationActive digital documents are not only capable of performing various operations using their internal functionality and external services, accessible in the environment in which they operate, but can also migrate on their own over a network of mobile devices that provide dynamically changing execution contexts. They may imply conflicts between preferences of the active document and the device the former wishes to execute on. In the...
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Differentiating patients with obstructive sleep apnea from healthy controls based on heart rate-blood pressure coupling quantified by entropy-based indices
PublicationWe introduce an entropy-based classification method for pairs of sequences (ECPS) for quantifying mutual dependencies in heart rate and beat-to-beat blood pressure recordings. The purpose of the method is to build a classifier for data in which each item consists of two intertwined data series taken for each subject. The method is based on ordinal patterns and uses entropy-like indices. Machine learning is used to select a subset...
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CaZnO-based nanoghosts for the detection of ssDNA, pCRISPR and recombinant SARS-CoV-2 spike antigen and targeted delivery of doxorubicin
PublicationOverexpression of proteins/antigens and other gene-related sequences in the bodies could lead to significant mutations and refractory diseases. Detection and identification of assorted trace concentrations of such proteins/antigens and/or gene-related sequences remain challenging, affecting different pathogens and making viruses stronger. Correspondingly, coronavirus (SARS-CoV-2) mutations/alterations and spread could lead to overexpression...
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Limiting distribution of Lempel Ziv'78 redundancy
PublicationWe show that the Lempel Ziv'78 redundancy rate tends to a Gaussian distribution for memoryless sources. We accomplish it by extending findings from our 1995 paper [3]. We present a new simplified proof of the Central Limit Theorem for the number of phrases in the LZ'78 algorithm. As in our 1995 paper, here we first analyze the asymptotic behavior of the total path length in a digital search tree (a DST) built from independent sequences....
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On the Limiting distribution of Lempel Ziv'78 Redundancy for Memoryles Sources
PublicationWe show that the Lempel Ziv'78 redundancy rate tends to a Gaussian distribution for memoryless sources. We accomplish it by extending findings from our 1995 paper [3]. We present a new simplified proof of the Central Limit Theorem for the number of phrases in the LZ'78 algorithm. As in our 1995 paper, here we first analyze the asymptotic behavior of the total path length in a digital search tree (a DST) built from independent sequences....
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Quaternion encryption methods for multimedia transmission, a survey of existing approaches
PublicationIn this paper we review quaternion encryption methods for multimedia transmission. We explain their weak and strong properties as well as suggest possible modifications. Our main focus is an algorithm QFC presented in paper by Dzwonkowski et al. (2015). All encryption methods, presented in this paper, use special properties of quaternions to perform rotations of data sequences in 3D space. Each method uses a common key generation...
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Minimization of the number of periodic points for smooth self-maps of closed simply-connected 4-manifolds
PublicationLet M be a smooth closed simply-connected 4-dimensional manifold, f be a smooth self-map of M with fast grow of Lefschetz numbers and r be a product of different primes. The authors calculate the invariant equal to the minimal number of r-periodic points in the smooth homotopy class of f.
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Passing from requirements specification to class model using application domain ontology
PublicationThe quality of a classic software engineering process depends on the completeness of project documents and on the inter-phase consistency. In this paper, a method for passing from the requirement specification to the class model is proposed. First, a developer browses the text of the requirements, extracts the word sequences, and places them as terms into the glossary. Next, the internal ontology logic for the glossary needs to...
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Continuous wave sonar with hyperbolic frequency modulation keyed by pseudo-random sequence
PublicationA CW FM type sounding signal is used in the classical solution of silent sonar. While the signal provides a relatively simple implementation of digital signal processing, and ensures good detection conditions, unfortunately, in the presence of the Doppler effect, distance measurement results tend to be wrong. This is due to the fact that the received signal’s instantaneous frequency value is dependent both on the distance to the...
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Conserved motifs of MutL proteins
PublicationtThe MutL protein is best known for its function in DNA mismatch repair (MMR). However, there isevidence to suggest that MutL is not only the linker connecting the functions of MutS and MutH in MMR,but that it also participates in other repair systems, such as Very Short Patch (VSP), Base Excision (BER)and Nucleotide Excision Repair (NER). This study set out to identify the most highly conserved aminoacid sequence motifs in MutL...