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Search results for: SURROGATES MODELING
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Modeling SARS‐CoV‐2 proteins in the CASP‐commons experiment
PublicationCritical Assessment of Structure Prediction (CASP) is an organization aimed at advancing the state of the art in computing protein structure from sequence. In the spring of 2020, CASP launched a community project to compute the structures of the most structurally challenging proteins coded for in the SARS-CoV-2 genome. Forty-seven research groups submitted over 3000 three-dimensional models and 700 sets of accuracy estimates on...
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Modeling the Structure, Dynamics, and Transformations of Proteins with the UNRES Force Field
PublicationThe physics-based united-residue (UNRES) model of proteins ( www.unres.pl ) has been designed to carry out large-scale simulations of protein folding. The force field has been derived and parameterized based on the principles of statistical-mechanics, which makes it independent of structural databases and applicable to treat nonstandard situations such as, proteins that contain D-amino-acid residues. Powered by Langevin dynamics...
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Modeling and Evaluation of Electric Treeing Phenomena in Polymeric Cable Insulation
PublicationThis paper investigates the treeing phenomenon in polymeric materials such as crosslinked polyethylene (XLPE) that is widely used in medium and high voltage power cables as primary insulation. The modeling of electrical tree growth in the insulation from its initiation to breakdown is significant research work that illustrates the discharge dynamics and its impact on aging process in polymeric insulation. This study utilizes pulse...
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Mainstream shortcut N removal modeling current status and perspectives
PublicationThis work gives an overview of the state-of-the-art in modelling of short-cut processes for nitrogen removal in mainstream wastewater treatment and presents future perspectives for directing research efforts in line with the needs of practice. The modelling status for deammonification (i.e., anammox-based) and nitrite-shunt processes is presented with its challenges and limitations. The importance of mathematical models for considering...
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Systems, Environments, and Soliton Rate Equations: Toward Realistic Modeling
PublicationIn order to solve a system of nonlinear rate equations one can try to use some soliton methods. The procedure involves three steps: (1) find a ‘Lax representation’ where all the kinetic variables are combined into a single matrix ρ, all the kinetic constants are encoded in a matrix H; (2) find a Darboux–Bäcklund dressing transformation for the Lax representation iρ˙=[H,f(ρ)], where f models a time-dependent environment; (3) find...
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A Novel Approach to Fully Nonlinear Mathematical Modeling of Tectonic Plates
PublicationThe motion of the Earth's layers due to internal pressures is simulated in this research with an efficient mathematical model. The Earth, which revolves around its axis of rotation and is under internal pressure, will change the shape and displacement of the internal layers and tectonic plates. Applied mathematical models are based on a new approach to shell theory involving both two and three-dimensional approaches. It is the...
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SIMPLIFIED MODELING OF STRESS AND DEFLECTION LIMIT STATES OF UNDERGROUND TANKS
PublicationFuel tanks are designed with regard to standard actions and operating conditions. The work analyses the impact of corrosion and other means to variation of stresses and deformation of a horizontal underground tank shell. The computations are preliminary. Due to the long computational time of the entire tank the analysis is restricted to its part only. The full analysis is bound to assess structural reliability, further allowing...
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Understanding the Ukrainian Migrants Challenges in the EU: A Topic Modeling Approach
PublicationConfronted with the aggression against Ukraine in 2022, Europe faces one of the most important humanitarian challenges - the migration of war refugees from Ukraine, most of them women with children and the elderly. Both international institutions such as the European Union and the United Nations, but also national governments and, above all, local governments, which are the main providers of services and resources for refugees,...
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Soft modeling support for managing knowledge-based information technology (IT)
PublicationW pracy omówiono metody miękkiego modelowania. Wskazano na możliwości zastosowania tych metod do wspomagania tworzenia systemów opartych na wiedzy. Omówiono także metody oparte na teorii zbiorów rozmytych.
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Modeling of conducted emission of dc-dc switch-mode converter
PublicationW publikacji zaprezentowano sposób modelowania i wyznaczania emisji przewodzonej zaburzeń elektromagnetycznych w przekształtnikach energoelektronicznych. Na przykładzie przekształtnika DC-DC, zostały dobrane odpowiednie narzędzia CAD do szerokopasmowego modelowania i symulacji przekształtnika energoelektronicznego. Otrzymane rezultaty zostały eksperymentalnie potwierdzone i porównane zarówno w dziedzinie czasu jak i częstotliwości...
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Modeling of active fiber Bragg grating underwater acoustic sensor.
PublicationW pracy przedstawiono wyniki modelowania nowego typu przetwornika hydroakustycznego wykorzystującego światłowodową siatkę Bragga. Siatka ta, domieszkowana jonami pierwiastków ziem rzadkich, pracuje jako laser z rozłożonym sprzężeniem zwrotnym, co pozwala na znaczne zwiększenie czułości tego prztwornika w porównaniu z rozwiązaniami wykorzystującymi siatki pasywne. W celu uzyskania równomiernego rozkładu naprężeń siatki zastosowano...
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Comprehensive modeling of interferometric hydrophone with self-supported mandrel transducer.
PublicationW pracy przedstawiono wyniki modelowania nowego typu samonośnego przetwornika dla interferometrycznego hydrofonu światłowodowego. Zaprezentowano wyniki analizy statycznej, modowej i dynamicznej przeprowadzonej przy pomocy Metody Elementów Skończonych. W modelowaniu wykorzyastano techniki opracowane dla laminatów, co pozwoliło na uzyskanie dokładnych wyników przy względnie krótkim czasie obliczeń.
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Application of virtual reality modeling language for 3D seafloor imaging.
PublicationW artykule przedstawiono koncepcję wykorzystania języka opisu wirtualnej rzeczywistości do trójwymiarowej wizualizacji objektów znajdujących się na dnie morskim w zastosowaniu do danych pochodzących z systemów hydroakustycznych. W szczególności zaprezentowano technikę tworzenia trójwymiarowych scen przeznaczonych do szerokiego udostępniania w sieci Internet.
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Submerged object imaging using virtual reality modeling language.
PublicationArtykuł przedstawia sposób wykorzystania języka opisu wirtualnej rzeczywistości w archeologii podwodnej. Przedstawiono propozycję wizualizacji objektów znajdujących się na dnie morskim, a w szczególności zaprezentowano technikę rekonstrukcji obrazu trójwymiarowego z danych pochodzących z sonaru wielowiązkowego.
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Some aspects of physical and numerical modeling of water hammer in pipelines
PublicationCharakterystyki ciśnieniowe otrzymywane w wyniku symulacji numerycznych uderzenia hydraulicznego różnią się zasadniczo od charakterystyk obserwowanych na drodze doświadczalnej. Stosowane zabiegi matematyczne i numeryczne pozwalające na poprawę zgodności między obliczeniami a pomiarami okazują się skuteczne tylko w przypadku prostych rurociągów o stałej średnicy. Dla bardziej skomplikowanych przypadków prawidłowe odwzorowanie zjawiska...
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On bounded load routings for modeling k-regular connection topologies
PublicationW pracy analizowane są problemy modelowania k-regularnych topologii sieci komputerowych z punktu widzenia routingu typu point-to-point. Zaprezentowane są algorytmy oraz przeprowadzona jest analiza złożoności obliczeniowej.
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Timing diagrams functionalities in information systems modeling with UML 2
PublicationArtykuł prezentuje aktualną klasyfikację diagramów interakcji języka UML 2 i przedstawia właściwości nowego diagramu tj. diagram harmonogramowania. W artykule omówiono ich istotę oraz podstawowe i zaawansowane kategorie ich modelowania. Diagram ten umożliwia reprezentowanie na osi czasu zmian dopuszczalnych stanów klasyfikatorów uczestniczących w interakcji. Możliwość harmonizacji linii zmian stanów dla większej liczby klasyfikatorów...
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Modeling of the behavior of granular bodies using DEM with contact moments
PublicationW artykule przedstawiono wyniki symulacji badania trójosiowego dla materiałów granulowanych. Obliczenia wykonano przy zastosowaniu metody DEM. Pokazano wpływ momentów kontaktowych na wytrzymałość próbki. Zbadano wpływ parametrów mikroskopowych.
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Comparative modeling of shear localization in granular bodies with FEM and DEM
PublicationThe intention of the paper is to compare the calculations of shear zones in granular bodies using two different approaches: a continuum and a discrete one. In the first case, the FEM based on a micro-polar hypoplastic constitutive law was used. In the second case, the DEM was taken advantage of, where contact moments were taken into account to model grain roughness. The comparative calculations were performed for a passive case...
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Numerical modeling of shear localizations during granular flow in silos.
PublicationW artykule przedstawiono wyniki numerycznej analizy MES dotyczącej przepływów materiałów sypkich w silosach. Omówiono różne metody opisu lokalizacji odkształceń stycznych wewnątrz materiałów. Wyniki porónano z wynikami doświadczalnymi.
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Explicit Size-Reduction-Oriented Design of a Compact Microstrip Rat-Race Coupler Using Surrogate-Based Optimization Methods
PublicationIn this paper, an explicit size reduction of a compact rat-race coupler implemented in a microstrip technology is considered. The coupler circuit features a simple topology with a densely arranged layout that exploits a combination of high- and low-impedance transmission line sections. All relevant dimensions of the structure are simultaneously optimized in order to explicitly reduce the coupler size while maintaining equal power...
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3D MODELLING OF CYLINDRICAL-SHAPED OBJECTS FROM LIDAR DATA - AN ASSESSMENT BASED ON THEORETICAL MODELLING AND EXPERIMENTAL DATA
PublicationDespite the increasing availability of measured laser scanning data and their widespread use, there is still the problem of rapid and correct numerical interpretation of results. This is due to the large number of observations that carry similar information. Therefore, it is necessary to extract from the results only the essential features of the modelled objects. Usually, it is based on a process using filtration, followed by...
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Expedited Acquisition of Database Designs for Reduced-Cost Performance-Driven Modeling and Rapid Dimension Scaling of Antenna Structures
PublicationFast replacement models have been playing an increasing role in high-frequency electronics, including the design of antenna structures. Their role is to improve computational efficiency of the procedures that normally entail large numbers of expensive full-wave electromagnetic (EM) simulations, e.g., parametric optimization or uncertainty quantification. Recently introduced performance-driven modeling methods, such as the nested...
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Expression of epithelial to mesenchymal transition-related markers in lymph node metastases as a surrogate for primary tumor metastatic potential in breast cancer
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Modelling and diagnostics of a traction transformer - a case study
PublicationW niniejszym artykule przedstawiono wyniki badań w dziedzinie diagnostyki kolei elektrycznych. Zostały one przeprowadzone przez międzynarodowe przemysłowo-akademickie konsorcjum w ramach projektu europejskiego (6-go programu ramowego). Skupiono się na modelowaniu transformatora trakcyjnego z myślą o rozwinięciu nieinwazyjnej metody diagnostycznej w czasie rzeczywistym. Model przeznaczony do badań finalnych został rozwinięty w oparciu...
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DFT modelling of the edge dislocation in 4H-SiC
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Sensor data fusion techniques for environment modelling
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Modelling and Identification of Tower Type Historic Buildings
PublicationW pracy omawia się problemy modelowania i identyfikacji zabytkowych murowanych budowli wieżowych na przykładzie wieży Twierdzy Wisłoujście. Przedstawiono analizę modalną na podstawie dwukierunkowych pomiarów przyspieszeń na 9 poziomach wieży. Wyniki analizy posłużyły do identyfikacji modelu matematycznego budowli w postaci sztywnego bloku na podłożu sprężystym. Wykorzystano hierarchiczną procedurę opartą na analizie wrażliwości.
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Numerical modelling of DMT test in calibration chamber
PublicationAnaliza numeryczna badania DMT wykonanego w komorze kalibracyjnej w Katedrze Geotechniki Politechniki Gdańskiej. Badania przeprowadzono w piasku Lubiatowo średnio zagęszczonym i zagęszczonym przy składowej pionowej naprężenia 100 kPa. Modelowano proces wciskania ostrza dylatometru oraz fazę odkształcenia membrany. Analiza parametryczna uwzględnia wpływ wartości kąta tarcia wewnętrznego i dylatancji oraz modułu odkształcenia uzyskanych...
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Modelling the context of use for Intranet portals design
PublicationIntranet portals in contemporary enterprises affect the way how people work, communicate and build relationships within teams and organizations. Developing high usability in Intranet projects requires analysing context of use and including many additional organizational and cultural factors, normally not present in regular software projects. A modelling framework presented in this paper is useful for analysing context of use for...
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The modelling and enhancement of water hydrodynamics: general discussion
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Human Preference Modelling in Usability of Graphical Interfaces
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Molecular Modelling of the Neurophysin II/Vasopressin Complex
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Semi-Markov Approach to the Shipping Safety Modelling
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Fading modelling in dynamic off-body channels
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Modelling of acoustic backscattering by southern Baltic herring
PublicationAssessment of Baltic herring abundance can be carried out using acoustic techniques. Analysis of the relationship between the Baltic herring individual target strength, TS, and the total fish length, L, important for the acoustic assessment, showed the relationship to be dependent on the location of the study area. This finding motivated a detailed analysis of the relationship for the herring occurring in the southern Baltic...
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Optimization of quadrilateral mesh for ship hull modelling
PublicationArtykuł przedstawia metodę poprawy jakości czworokątnej siatki elementów skończonych, które najlepiej nadają się do modelowania kadłuba statku dla potrzeb analizy MES. W metodzie zakłada się poprawną topologię siatki i stosuje gradient funkcji celu do poszukiwania optymalnego rozwiązania. Funkcja celu może być dowolną funkcją, opisująca jakość elementu (metryka), odpowiednią dla wymagań metody elementów skończonych. W artykule...
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Modelling of Mechatronic Systems with Distributed Parameter Components
PublicationThe paper presents an uniform, port-based approach to modelling of both lumped and distributed parameter systems. Port-based model of distributed system has been defined by application of the bond graph methodology and the distributed transfer function method (DTFM). The proposed method of modelling enables to formulate input data for computer analysis by application of the DTFM. The computational package for the analysis of complex...
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Modelling of planar movement dynamics of upper limb
PublicationThe original model describing planar movement dynamics of upper limb is presented. The upper limb is modelled as two-joints system loaded by external forces and internal forces of striated skeletal muscles. A behaviour of each muscle is modelled as a system composed of serially linked rheologic fragments that have different mechanical properties. These muscle models allow us to simulate a behaviour of short fusiform muscle (3DOF...
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Modelling gene expression of a self-regulating protein
PublicationWe analyze a model of gene transcription and protein synthesis. We take into account the number of sites on the protein’s promoter at which the protein’s dimers can bind blocking transcription of protein mRNA.
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Modelling of blood flow: from macro to microscales
PublicationThe aim of this paper it to review various scale approaches to blood flow modelling. Blood motion may be described by three types of mathematical models according to the observed scales or resolutions, namely microscopic, mesoscopic and macroscopic description. The above approaches are discussed together with their advantages and disadvantages. Several results of mesoscopic simulations are presented.
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Modelling of joining route segments of differential curvature
PublicationThe paper presents a new general method of modelling route segments curvature using differential equations. The method enables joining of route segments of different curvature. Transitional curves of linear and nonlinear curvatures have been identified in the case of joining two circular arcs by S-shaped and C-oval transitions. The obtained S-shaped curves have been compared to the cubic C-Bezier curves and to the Pythagorean hodograph...
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Modelling of the viscoelastic properties of the technical fabric VALMEX
PublicationThe analysis of the Burgers model used for the constitutive description of the technical fabric VALMEX vis-coelastic behavior is presented. It has revealed that the correctness of the identification depends strongly on the level of the immediate strain taken for calculations. Moreover, it has been proven that the Burgers model can be used for modelling of the viscoelastic properties of the polyester reinforced PVC coated VALMEX...
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Simplified Distribution Grid Modelling for Connection Analyses
PublicationThis paper considers the modelling of medium and low voltage grids for the purpose of connection studies by distribution grid operators. Possible simplifications in grid modelling are discussed, which are acceptable from the viewpoint of the final result. The main driver of the modelling simplification is the MS Excel environment used as the computation platform, and the limitation of time for grid modelling.
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Business Process Modelling and Enterprise Improvement Analysis
PublicationThe main trends in developing an approach and tools for business process modelling are discussed. Business Process Management (BPM) and BPM Notation (BPMN) are presented. Moreover, the possibilities of C2NIWA in a wide range of these tools running on a supercomputer are suggested. Firstly, the company development strategy can be planned . Secondly, quick and flexible changes of its processes can be modelled, analysed and implemented....
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Modelling and computer animation of geodetic field work
Publication3D modelling of objects is a way of obtaining information, while the visualization of geospatial data is becoming a production task in the scope of surveying. Visualization of geospatial data provides effective tools for analysis information about the land surface, land cover, its features, properties etc. Computer animations, both 2D images and 3D are becoming additional, expected and clear form for presentation results of geodetic...
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Fading Modelling in Dynamic Off-Body Channels
PublicationThis paper presents an off-body fading channel model for Body Area Networks. The proposed model, based on both simulations and measurements at 2.45 GHz in a realistic indoor environment, consists of three components: mean path loss, body shadowing, and multipath fading. The first is modelled as a log function of distance, the path loss exponent being in between 0.4 and 1.6. A statistical perspective is taken for the other two components,...
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Modelling of Nuclear Power Plant Steam Turbine
PublicationThe paper describes the approach to a Nuclear Power Plant steam turbine modelling which would enable on-line optimal process control (model based) and diagnosis over wide range of operating conditions caused by changing power demand. Presented model is static, multivariable and nonlinear. Such model enables analyzing the heat cogeneration aspects. Developed model is validated and verified by using archive data gained from researches...
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Path Loss Modelling for Location Service Applications
PublicationThe aim of this paper is the path loss modeling for the radiolocation services in radiocommunication networks, particularly in cellular networks. The main results of the measurements obtained in the physical layer of the UMTS are introduced. A new method for the utilization of the multipath propagation phenomenon to improve the estimation of the distance between the mobile station (MS) and the base station (BS) is outlined. This...
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Modelling processes for Polish civil aviation market
PublicationThe present , paper is the first step in research of Polish civil aviation market, focusing on the area of civil, legacy airlines. First, the market is described with its players, current conditions and its main problems. Next, the tools which are currently used for the prognosis processes are presented. Finally, the idea of a new model (fuzzy model) for the process of prognosis is presented.