Search results for: biophysics
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Polar localization of new flavonoids from aerial parts of Scleranthus perennis and Hottonia palustris and their modulatory action on lipid membranes properties
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Interactions of amphotericin B derivatives with lipid membranes - a molecular dynamics study
PublicationW pracy analizowano oddziaływanie dwóch nisko-toksycznych pochodnych amfoterycyny B (związki SAmE i PAmE) z modelami błon lipidowych. Badania wykonane zostały za pomocą dynamiki molekularnej. Modele błon oprócz fosfolipidów DMPC zawierały odpowiednio cholesterol (model błony zwierzęcej) lub ertosterol (model błony grzybowej). Analiza wyników wykazała, że obie pochodne amfoterycyny B zachowują się inaczej w błonie cholesterolowej...
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Structural and dynamic changes adopted by EmrE, multidrug transporter protein—Studies by molecular dynamics simulation
PublicationEmrE protein transports positively charged aromatic drugs (xenobiotics) in exchange for two protons and thus provides bacteria resistance to variety of drugs. In order to understand how this protein may recognize ligands, the monomer and asymmetric apo-form of the EmrE dimer embedded in a heterogeneous phospholipid (POPE + POPG) membrane were studied by molecular dynamics simulations. Dimer is regarded as a functional form of the...
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Phospholipid-functionalized gold electrode for cellular membrane interface studies - interactions between DMPC bilayer and human cystatin C
PublicationThis work describes the electrochemical studies on the interactions between V57G mutant of human cystatin C (hCC V57G) and membrane bilayer immobilized on the surface of a gold electrode. The electrode was modified with 6-mercaptohexan-1-ol (MCH) and 1,2-dimyristoyl-sn-glycero-3-phosphocholine (DMPC). DMPC was used as a membrane mimetic for monitoring electrochemical changes resulting from the interactions between the functionalized...
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Comparative molecular dynamics simulations of amphotericin B-cholesterol/ergosterol membrane channels
PublicationBadania polegały na przeprowadzeniu porównawczej dynamiki molekularnej dla dwóch typów kanałów amfoterycyny B. Obie symulacje różniły się rodzajem sterolu (cholesterol lub ergosterol). Na podstawie wyników przeprowadzonych prac ustalono jakie elementy strukturalne badanych kanałów mogą być odpowiedzialne za selektywne działanie amfoterycyny B.
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Excitation energy transport and trapping in concentrated solid solutions offlavomononucleotide.
PublicationPraca dotyczy właściwości transportu i pułapkowania energii wzbudzenia w układzie monomer dimer dla flawomononukleotydu rozpuszczonego w filmach alkoholu poliwinylowego. Pokazano, że w tym przypadku wydajność kwantowa i depolaryzacja nie dają się opisać w ramach teorii nie uwzględniającej powrotnego przekazywania energii i że znacznie lepsza zgodność uzyskanych wyników doświadczalnych zachodzi z teorią, w której fluoryzujące...
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Human Gb3/CD77 synthase reveals specificity toward two or four different acceptors depending on amino acid at position 211, creating Pk, P1 and NOR blood group antigens
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Rapid PD-L1 detection in tumors with PET using a highly specific peptide
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Pivotal participation of nitrogen dioxide in l-arginine induced acute necrotizing pancreatitis: protective role of superoxide scavenger 4-OH-TEMPO
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The role of phoenixin in the proliferation and migration of ectopic epithelial cells in vitro
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Corrigendum to “The role of phoenixin in the proliferation and migration of ectopic epithelial cells in vitro” [Biochem. Biophys. Res. Commun. 646 (26 February 2023) 44–49]
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Graphene-encapsulated iron nanoparticles as a non-viral vector for gene delivery into melanoma cells
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Distance between the Basic Group of the Amino Acid Residue's Side Chain in Position P1of Trypsin Inhibitor CMTI-III and Asp189in the Substrate Pocket of Trypsin Has an Essential Influence on the Inhibitory Activity
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A simple method for selection of trypsin chromogenic substrates using combinatorial chemistry approach
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Design, Chemical Synthesis and Kinetic Studies of Trypsin Chromogenic Substrates Based on the Proteinase Binding Loop of Cucurbita maxima Trypsin Inhibitor (CMTI-III)
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Chromogenic Substrates of Bovine β-Trypsin: The Influence of an Amino Acid Residue in P1 Position on Their Interaction with the Enzyme
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Identification of X-DING-CD4, a new member of human DING protein family that is secreted by HIV-1 resistant CD4+ T cells and has anti-viral activity
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Techniques of preparing plant material for chromatographic separation and analysis
PublicationArtykuł przedstawia dyskusję na temat technik wykorzystywanych podczas przygotowywania próbek materiału roślinnego do rozdzielania chromatograficznego i analizy. Opisane techniki to: suszenie, homogenizacja, ługowanie, ekstrakcja. Przedstawiono także techniki ekstrakcyjne tj. ekstrakcja z wykorzystaniem ultradźwięków, przyśpieszona ekstrakcja rozpuszczalnikiem, ekstrakcja z wykorzystaniem mikrofal, ekstrakcja z wykorzystaniem rozpuszczalnika...
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Trends in solventless sample preparation techniques for environmental analysis
PublicationPraca przedstawia najnowsze tendencje w metodach przygotowania próbek do analizy środowiskowej. Najpierw przedstawiono klasyfikację tzw. bezrozpuszczalnikowych technik przygotowania próbek. Następnie, szczegółowo przedstawiono trzy techniki, traktowane priorytetowo, a mianowicie: mikroekstrakcję do fazy stacjonarnej (SPME), ekstrakcję do pojedynczej kropli (SPME)i analizę fazy nadpowierzchniowej (HS), w odniesieniu do ich użyteczności...
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Chinifur, a Selective Inhibitor and "Subversive Substrate" for Trypanosoma congolense Trypanothione Reductase
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Genistein inhibits activities of methylenetetrahydrofolate reductase and lactate dehydrogenase, enzymes which use NADH as a substrate
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Effects of metallic silver particles on resonance energy transfer in label-led bovine serum albumin
PublicationZbadano wpływ cząstek metalicznego srebra na rezonansowe przekazywanie energii od wewnętrznych residów tryptofanowych w proteinie do zewnętrznie dowiązanego akceptora. W tych warunkach zaobserwowano istotny wzrost odległości Fórstera z 28,6 A do 63 A, co wskazuje na możliwość użycia cząstek srebra przy mierzeniu dużych odległości między molekułami i ich o przydatność w zastosowaniach biotechnologicznych.
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Optimized AVHRR land surface temperature downscaling method for local scale observations: case study for the coastal area of the Gulf of Gdańsk
PublicationSatellite imaging systems have known limitations regarding their spatial and temporal resolution. The approaches based on subpixel mapping of the Earth’s environment, which rely on combining the data retrieved from sensors of higher temporal and lower spatial resolution with the data characterized by lower temporal but higher spatial resolution, are of considerable interest. The paper presents the downscaling process of the land...
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Molecular profiles of thyroid cancer subtypes: Classification based on features of tissue revealed by mass spectrometry imaging
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Modification of quaternary structure of Candida albicans GlcN-6-P synthase and its desensitization to inhibition by UDP-GlcNAc by site-directed mutagenesis
PublicationSite-directed mutagenesis of the CaGFA1 gene encoding glucosamine-6-phosphate synthase from Candida albicans was performed. Desensitization of the enzyme to inhibition by UDPGlcNAc was achieved upon T487I and H492F substitutions at the UDP-GlcNAc binding site, exchange of D524, S525 and S527 for Ala at the dimer:dimer interface and construction of the tail-lock array (L434R and L460A) at the C-tail region. The first two sets if...
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Insight into the oligomeric structure of PORA from A. thaliana
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Endogenously generated DNA nucleobase modifications source, and significance as possible biomarkers of malignant transformation risk, and role in anticancer therapy
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Viral infection-oxidative stress/DNA damage-aberrant DNA methylation: separate or interrelated events responsible for genetic instability and childhood ALL development?
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Structure determination of UL49.5 transmembrane protein from bovine herpesvirus 1 by NMR spectroscopy and molecular dynamics
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The effects of p53 gene inactivation on mutant proteome expression in a human melanoma cell model
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Structural elucidation of transmembrane transporter protein bilitranslocase: Conformational analysis of the second transmembrane region TM2 by molecular dynamics and NMR spectroscopy
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Membrane structure and interactions of peptide hormones with model lipid bilayers
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Self-assembly and interactions of short antimicrobial cationic lipopeptides with membrane lipids: ITC, FTIR and molecular dynamics studies
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Modulation of polyene antibiotics self-association by ions from the hofmeister series
PublicationZbadano wpływ soli z serii hofmeistera na zjawisko samoasocjacji antybiotyku polienowego amfoterycyny B i jego pochodnych. Wykazano, że sole te zmieniając właściwości wody, wpływają istotnie na strukturę roztworów tych antybiotyków. Sole kosmotropowe zmniejszają rozpuszczalność związków, chaotropowe dają efekt przeciwny. Informacja ta jest istotna dla zrozumienia natury toksyczności amfoterycyny B i jej pochodnych.
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Nitroreductase reactions of Arabidopsis thaliana thioredoxin reductase
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Quantitative structure–activity relationships in enzymatic single-electron reduction of nitroaromatic explosives: implications for their cytotoxicity
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Lipid membranes exposed to dispersions of phytantriol and monoolein cubosomes: Langmuir monolayer and HeLa cell membrane studies
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Excitation energy transport and trapping in concentrated solid solution of flavomononucleotide
PublicationW pracy analizowano bez promienisty transfer energii w stężonych stałych roztworach (folie polimerowe) FMN. W w/w roztworach występują świecące dimery FMN. Pokazano, że jedynie uwzględnienie powrotnego transferu energii pozwala zadowalająco wyjaśnić mechanizm przenoszenia energii w badanych układach.
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Mariusz Figurski prof. dr hab. inż.
PeopleMariusz Józef Figurski (born 27 April 1964 in Łasinie, Poland) - Polish geodesist, professor of technical sciences, professor at the Gdańsk University of Technology. Early life and education He passed the matriculation examination in 1983 after he had finished Jan III Sobieski High school in Grudziądz. He graduated the Military University of Technology on an individual mode at the Faculty of Electromechanics and Civil Engineering...
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Sulforaphane, a cruciferous vegetable-derived isothiocyanate, inhibits protein synthesis in human prostate cancer cells
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Same but different — Molecular comparison of human KTI12 and PSTK
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Cathepsin C is a novel mediator of podocyte and renal injury induced by hyperglycemia
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Intra- and intersubunit changes accompanying thermal activation of the HtrA2(Omi) protease homotrimer
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The role of the LB structural loop and its interactions with the PDZ domain of the human HtrA3 protease
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Cathepsin G activity lowers plasma LDL and reduces atherosclerosis
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Rat cathepsin K: Enzymatic specificity and regulation of its collagenolytic activity
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Irreversible alterations in the hemoglobin structure affect oxygen binding in human packed red blood cells
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Quantitative proteomic analysis of anticancer drug RH1 resistance in liver carcinoma
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Application of high pressure laser flash photolysis in studies on selected hemoprotein reactions
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Jaroslaw Tegowski prof. dr hab.
PeopleJaroslaw Tegowski was born in Olsztyn, Poland, in 1955. He received the M.S. degree in physics from the University of Gdansk, Gdansk, Poland, in 1981, and the Ph.D. degree in physical oceanography in 1995 and the habilitation degree from the Institute of Oceanology, Polish Academy of Sciences, Sopot, Poland, in 2007. From 1983 to 2008, he was a Research Assistant and a next Associate Professor at the Marine Acoustical Laboratory,...