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Institute of Applied Mathematics
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Year 2024
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A note on the Morse homology for a class of functionals in Banach spaces involving the 2p-area functional
PublicationIn this paper we show how to construct Morse homology for an explicit class of functionals involving the 2p-area functional. The natural domain of definition of such functionals is the Banach space W_0^{1,2p}(\Omega), where p > n/2 and \Omega \subet R^n is a bounded domain with sufficiently smooth boundary. As W_0^{1,2p}(\Omega) is not isomorphic to its dual space,critical points of such functionals cannot be non-degenerate...
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Algebraic periods and minimal number of periodic points for smooth self-maps of 1-connected 4-manifolds with definite intersection forms
PublicationLet M be a closed 1-connected smooth 4-manifolds, and let r be a non-negative integer. We study the problem of finding minimal number of r-periodic points in the smooth homotopy class of a given map f: M-->M. This task is related to determining a topological invariant D^4_r[f], defined in Graff and Jezierski (Forum Math 21(3):491–509, 2009), expressed in terms of Lefschetz numbers of iterations and local fixed point indices of...
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An absorbing set for the Chialvo map
PublicationThe classical Chialvo model, introduced in 1995, is one of the most important models that describe single neuron dynamics. In order to conduct effective numerical analysis of this model, it is necessary to obtain a rigorous estimate for the maximal bounded invariant set. We discuss this problem, and we correct and improve the results obtained by Courbage and Nekorkin (2010). In particular, we provide an explicit formula for an...
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Analysis of dynamics of a map-based neuron model via Lorenz maps
PublicationModeling nerve cells can facilitate formulating hypotheses about their real behavior and improve understanding of their functioning. In this paper, we study a discrete neuron model introduced by Courbage et al. [Chaos 17, 043109 (2007)], where the originally piecewise linear function defining voltage dynamics is replaced by a cubic polynomial, with an additional parameter responsible for varying the slope. Showing that on a large...
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Changes in evaporation patterns and their impact on Climatic Water Balance and river discharges in central Poland, 1961–2020
PublicationThis study investigates the changes in precipitation and evaporation patterns and their impact on Climatic Water Balance and river discharges in central Poland from 1961 to 2020. The analysis focuses on two “normal” periods, 1961–1990 and 1991–2020 (according to the World Meteorological Organization). Bartlett’s test and the Kruskal–Wallis rank sum test were used to assess the homogeneity of variances and compare distributions...
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Diffusion equations with spatially dependent coefficients and fractal Cauer-type networks
PublicationIn this article, we formulate and solve the representation problem for diffusion equations: giving a discretization of the Laplace transform of a diffusion equation under a space discretization over a space scale determined by an increment h > 0, can we construct a continuous in h family of Cauer ladder networks whose constitutive equations match for all h > 0 the discretization. It is proved that for a finite differences discretization...
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Efficacy of modal curvature damage detection in various pre-damage data assumptions and modal identification techniques
PublicationThe efficacy of modal curvature approach for damage localization is discussed in the paper in the context of input data. Three modal identification methods, i.e., Eigensystem Realization Algorithm (ERA), Natural Excitation Technique with ERA (NExT-ERA) and Covariance Driven Stochastic Subspace Identification (SSI-Cov), and four methods of determining baseline data, i.e., real measurement of the undamaged state, analytical function,...
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Linear Time-Varying Dynamic-Algebraic Equations of Index One on Time Scales
PublicationIn this paper, we introduce a class of linear time-varying dynamic-algebraic equations (LTVDAE) of tractability index one on ar- bitrary time scales. We propose a procedure for the decoupling of the considered class LTVDAE. Explicit formulae are written down both for transfer operator and the obtained decoupled system. A projector ap- proach is used to prove the main statement of the paper and sufficient conditions of decoupling...
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Mixed, quantum-classical description of electron density transfer in the collision process
PublicationIn this work, we investigate an ion-atom model describing the time-dependent evolution of electron density during the collision. For a S3+- H system, numerical simulations are based on classical trajectory calculations, and the electron density behaviour is described with the time-dependent Schrödinger equation. We apply the finite difference method to obtain quantitative insights into the charge transfer dynamics, providing detailed...
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Periodic Solutions of Generalized Lagrangian Systems with Small Perturbations
PublicationIn this paper we study the generalized Lagrangian system with a small perturbation. We assume the main term in the system to have a maximum, but do not suppose any condition for perturbation term. Then we prove the existence of a periodic solution via Ekeland’s principle. Moreover, we prove a convergence theorem for periodic solutions of perturbed systems.
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Periodic solutions of Lagrangian systems under small perturbations
PublicationIn this paper we prove the existence of mountain pass periodic solutions of a certain class of generalized Lagrangian systems under small perturbations. We show that the found periodic solutions converge to a periodic solution of the unperturbed system if the perturbation tends to 0. The proof requires to work in a rather unusual (mixed) Orlicz–Sobolev space setting, which bears several challenges.
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Quasilinear elliptic problem in anisotropic Orlicz–Sobolev space on unbounded domain
PublicationWe study a quasilinear elliptic problem $-\text{div} (\nabla \Phi(\nabla u))+V(x)N'(u)=f(u)$ with anisotropic convex function $\Phi$ on the whole $\R^n$. To prove existence of a nontrivial weak solution we use the mountain pass theorem for a functional defined on anisotropic Orlicz-Sobolev space $\WLPhispace(\R^n)$. As the domain is unbounded we need to use Lions type lemma formulated for Young functions. Our assumptions broaden...
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Sex contribution to average age at onset of Huntington's disease depends on the number of (CAG)n repeats
PublicationHuntington’s disease (HD) is a hereditary neurodegenerative disorder caused by the extension of the CAG repeats in exon 1 of the HTT gene and is transmitted in a dominant manner. The present study aimed to assess whether patients’ sex, in the context of mutated and normal allele length, contributes to age on onset (AO) of HD. The study population comprised a large cohort of 3723 HD patients from the European Huntington’s Disease...
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Testing Topological Conjugacy of Time Series
PublicationThis paper considers a problem of testing, from a finite sample, a topological conjugacy of two trajectories coming from dynamical systems (X, f ) and (Y, g). More precisely, given x1, . . . , xn \subset X and y1, . . . , yn \subset Y such that xi+1 = f (xi) and yi+1 = g(yi) as well as h : X \rightarrow Y, we deliver a number of tests to check if f and g are topologically conjugated via h. The values of the tests are close to...
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The relative cup-length in local Morse cohomology
PublicationLocal Morse cohomology associates cohomology groups to isolating neighborhoods of gradient flows of Morse functions on (generally non-compact) Riemannian manifolds M. We show that local Morse cohomology is a module over the cohomology of the isolating neighborhood, which allows us to define a cup-length relative to the cohomology of the isolating neighborhood that gives a lower bound on the number of critical points of functions...
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Tutoring rówieśniczy jako skuteczna metoda wspierania procesu uczenia się
PublicationW artykule przedstawione zostały zarówno teoretyczne podstawy, jak i praktyczne zastosowania efektywnej formy wsparcia dydaktycznego jaką jest tutoring rówieśniczy. Analizie poddane zostały zajęcia realizowane w ramach tutoringu rówieśniczego na Wydziale Fizyki Technicznej i Matematyki Stosowanej Politechniki Gdańskiej. Analiza obejmuje ocenę efektywności tych zajęć, zaangażowanie studentów oraz ich satysfakcję z procesu nauki....
Year 2023
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A Generalized Version of the Lions-Type Lemma
PublicationIn this short paper, I recall the history of dealing with the lack of compactness of a sequence in the case of an unbounded domain and prove the vanishing Lions-type result for a sequence of Lebesgue-measurable functions. This lemma generalizes some results for a class of Orlicz–Sobolev spaces. What matters here is the behavior of the integral, not the space
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A note on simple bifurcation of equilibrium forms of an elastic rod on a deformable foundation
PublicationWe study bifurcation of equilibrium states of an elastic rod on a two-parameter Winkler foundation. In the article "Bifurcation of equilibrium forms of an elastic rod on a two-parameter Winkler foundation" [Nonlinear Anal., Real World Appl. 39 (2018) 451-463] the existence of simple bifurcation points was proved by the use of the Crandall-Rabinowitz theorem. In this paper we want to present an alternative proof of this fact based...
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Beyond Antioxidant Activity: Redox Properties of Catechins May Affect Changes in the DNA Methylation Profile—The Example of SRXN1 Gene
PublicationThe role of catechins in the epigenetic regulation of gene expression has been widely studied; however, if and how this phenomenon relates to the redox properties of these polyphenols remains unknown. Our earlier study demonstrated that exposure of the human colon adenocarcinoma HT29 cell line to these antioxidants affects the expression of redox-related genes. In particular, treatment with (−)-epigallocatechin (EGC) downregulated...
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Billiard in a rotating half-plane
PublicationThe main objective of this research is to study the properties of a billiard system in an unbounded domain with moving boundary. We consider a system consisting of an infinite rod (a straight line) and a ball (a massless point) on the plane. The rod rotates uniformly around one of its points and experiences elastic collisions with the ball. We define a mathematical model for the dynamics of such a system and write down asymptotic...
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Differentiating patients with obstructive sleep apnea from healthy controls based on heart rate-blood pressure coupling quantified by entropy-based indices
PublicationWe introduce an entropy-based classification method for pairs of sequences (ECPS) for quantifying mutual dependencies in heart rate and beat-to-beat blood pressure recordings. The purpose of the method is to build a classifier for data in which each item consists of two intertwined data series taken for each subject. The method is based on ordinal patterns and uses entropy-like indices. Machine learning is used to select a subset...
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Hopf bifurcation in time‐delayed gene expression model with dimers
PublicationWe study a mathematical model of gene transcription and protein synthesis with negative feedback. We consider a system of equations taking into account the formation of dimers (i.e., complex formed by two protein monomers), the way in which dimers bind to DNA and time delay in translation process. For the model consisting of three ordinary differential equations with time delay, we derive conditions for stability of the positive...
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Invariant Measures for Uncountable Random Interval Homeomorphisms
PublicationA necessary and sufficient condition for the iterated function system { f (·, ω) | ω ∈ } with probability P to have exactly one invariant measure μ∗ with μ∗((0, 1)) = 1 is given. The main novelty lies in the fact that we only require the transformations f (·, ω) to be increasing homeomorphims, without any smoothness condition, nei- ther we impose conditions on the cardinality of . In particular, positive Lyapunov exponents conditions...
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Periodic and chaotic dynamics in a map‐based neuron model
PublicationMap-based neuron models are an important tool in modeling neural dynamics and sometimes can be considered as an alternative to usually computationally costlier models based on continuous or hybrid dynamical systems. However, due to their discrete nature, rigorous mathematical analysis might be challenging. We study a discrete model of neuronal dynamics introduced by Chialvo in 1995. In particular, we show that its reduced one-dimensional...
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Spike patterns and chaos in a map-based neuron model
PublicationThe work studies the well-known map-based model of neuronal dynamics introduced in 2007 by Courbage, Nekorkin and Vdovin, important due to various medical applications. We also review and extend some of the existing results concerning β-transformations and (expanding) Lorenz mappings. Then we apply them for deducing important properties of spike-trains generated by the CNV model and explain their implications for neuron behaviour....
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The Arnold conjecture in $ \mathbb C\mathbb P^n $ and the Conley index
Publicationn this paper we give an alternative, purely Conley index based proof of the Arnold conjecture in CP^n asserting that a Hamiltonian diffeomorphism of CP^n endowed with the Fubini-Study metric has at least (n+1) fixed points.
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Topological-numerical analysis of a two-dimensional discrete neuron model
PublicationWe conduct computer-assisted analysis of a two-dimensional model of a neuron introduced by Chialvo in 1995 [Chaos, Solitons Fractals 5, 461–479]. We apply the method of rigorous analysis of global dynamics based on a set-oriented topological approach, introduced by Arai et al. in 2009 [SIAM J. Appl. Dyn. Syst. 8, 757–789] and improved and expanded afterward. Additionally, we introduce a new algorithm to analyze the return times...
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Total impact of oxidative stress genes on cardiovascular events—a 7-year follow-up study
PublicationCardiovascular (CV) events are the number one cause of lifetime disability and deaths worldwide. It is well known that traditional risk factors do not fully correlate with clinical outcomes; therefore, searching for other markers that would explain CV events occurrence seems essential. Of importance, one of the main factors at the origin of CV events is oxidative stress, causing inflammation and atherosclerotic plaque instability....
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TRAVELLING WAVES FOR LOW–GRADE GLIOMA GROWTH AND RESPONSE TO A CHEMOTHERAPY MODEL
PublicationLow-grade gliomas (LGGs) are primary brain tumours which evolve very slowly in time, but inevitably cause patient death. In this paper, we consider a PDE version of the previously proposed ODE model that describes the changes in the densities of functionally alive LGGs cells and cells that are irreversibly damaged by chemotherapy treatment. Besides the basic mathematical properties of the model, we study the possibility of the...
Year 2022
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A convergence result for mountain pass periodic solutions of perturbed Hamiltonian systems
PublicationIn this work, we study second-order Hamiltonian systems under small perturbations. We assume that the main term of the system has a mountain pass structure, but do not suppose any condition on the perturbation. We prove the existence of a periodic solution. Moreover, we show that periodic solutions of perturbed systems converge to periodic solutions of the unperturbed systems if the perturbation tends to zero. The assumption on...
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A NUMERICAL STUDY ON THE DYNAMICS OF DENGUE DISEASE MODEL WITH FRACTIONAL PIECEWISE DERIVATIVE
PublicationThe aim of this paper is to study the dynamics of Dengue disease model using a novel piecewise derivative approach in the sense of singular and non-singular kernels. The singular kernel operator is in the sense of Caputo, whereas the non-singular kernel operator is the Atangana–Baleanu Caputo operator. The existence and uniqueness of a solution with piecewise derivative are examined for the aforementioned problem. The suggested...
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Application of Doubly Connected Dominating Sets to Safe Rectangular Smart Grids
PublicationSmart grids, together with the Internet of Things, are considered to be the future of the electric energy world. This is possible through a two-way communication between nodes of the grids and computer processing. It is necessary that the communication is easy and safe, and the distance between a point of demand and supply is short, to reduce the electricity loss. All these requirements should be met at the lowest possible cost....
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Constructive Controllability for Incompressible Vector Fields
PublicationWe give a constructive proof of a global controllability result for an autonomous system of ODEs guided by bounded locally Lipschitz and divergence free (i.e. incompressible) vector field, when the phase space is the whole Euclidean space and the vector field satisfies so-called vanishing mean drift condition. For the case when the ODE is defined over some smooth compact connected Riemannian manifold, we significantly strengthen...
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Curlicues generated by circle homeomorphisms
PublicationWe investigate the curves in the complex plane which are generated by sequences of real numbers being the lifts of the points on the orbit of an orientation preserving circle homeomorphism. Geometrical properties of these curves such as boundedness, superficiality, local discrete radius of curvature are linked with dynamical properties of the circle homeomorphism which generates them: rotation number and its continued fraction...
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Generalized Dold sequences on partially-ordered sets
PublicationDold sequences constitute an important class of integer sequences that play an important role in combinatorics, number theory, topology and dynamical systems. We generalize the notion of Dold sequence for the case of partially ordered sets and describe their properties. In particular we give two alternative descriptions of generalized Dold sequences: by some class of elementary sequences as well as by different...
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Hydrological Dry Periods versus Atmospheric Circulations in the Lower Vistula Basin (Poland) in 1954–2018
PublicationThe paper discusses the impact of atmospheric circulation on the occurrence of droughts. The research in-cludes mean monthly discharges for 7 rivers in 1954-2018. Dry periods were determined with Standardised Streamflow Indices (SSI-12). Additionally, the circulation type calendar for Central Poland was used to determine the atmospheric circulation indices: western zonal (W), southern meridional (S) and cyclonicity (C). The analyses...
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Limits Theorems for Random Walks on Homeo(S1)
PublicationThe central limit theorem and law of the iterated logarithm for Markov chains corresponding to random walks on the space Homeo(S1) of circle homeomorphisms for centered Lipschitz functions and every starting point are proved.
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Matematyczny świat wirusów i bakterii
PublicationKiedyś, mówiąc o zastosowaniach matematyki, przychodziła nam na myśl głównie fizyka. Dziś wiemy, że matematyka ma ważne zastosowania również w biologii i medycynie. To, jak szybko rozwijają się bakterie i wirusy oraz jak szybko odpowiada na ich obecność nasz układ odpornościowy, można opisać językiem matematyki. Głównym narzędziem służącym do opisu tempa zmiany interesującej nas wielkości jest pochodna. Dzięki pochodnej możemy przewidzieć...
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MEMORY EFFECT ANALYSIS USING PIECEWISE CUBIC B-SPLINE OF TIME FRACTIONAL DIFFUSION EQUATION
PublicationThe purpose of this work is to study the memory effect analysis of Caputo–Fabrizio time fractional diffusion equation by means of cubic B-spline functions. The Caputo–Fabrizio interpretation of fractional derivative involves a non-singular kernel that permits to describe some class of material heterogeneities and the effect of memory more effectively. The proposed numerical technique relies on finite difference approach and cubic...
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Minimal Sets of Lefschetz Periods for Morse-Smale Diffeomorphisms of a Connected Sum of g Real Projective Planes
PublicationThe dataset titled Database of the minimal sets of Lefschetz periods for Morse-Smale diffeomorphisms of a connected sum of g real projective planes contains all of the values of the topological invariant called the minimal set of Lefschetz periods, computed for Morse-Smale diffeomorphisms of a non-orientable compact surface without boundary of genus g (i.e. a connected sum of g real projective planes), where g varies from 1 to...
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On a comparison principle and the uniqueness of spectral flow
PublicationThe spectral flow is a well-known quantity in spectral theory that measures the variation of spectra about 0 along paths of selfadjoint Fredholm operators. The aim of this work is twofold. Firstly, we consider homotopy invariance properties of the spectral flow and establish a simple formula which comprises its classical homotopy invariance and yields a comparison theorem for the spectral flow under compact perturbations. We apply...
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On Computing Curlicues Generated by Circle Homeomorphisms
PublicationThe dataset entitled Computing dynamical curlicues contains values of consecutive points on a curlicue generated, respectively, by rotation on the circle by different angles, the Arnold circle map (with various parameter values) and an exemplary sequence as well as corresponding diameters and Birkhoff averages of these curves. We additionally provide source codes of the Matlab programs which can be used to generate and plot the...
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On proper (1,2)‐dominating sets in graphs
PublicationIn 2008, Hedetniemi et al. introduced the concept of (1,)-domination and obtained some interesting results for (1,2) -domination. Obviously every (1,1) -dominating set of a graph (known as 2-dominating set) is (1,2) -dominating; to distinguish these concepts, we define a proper (1,2) -dominating set of a graph as follows: a subset is a proper (1,2) -dominating set of a graph if is (1,2) -dominating and it is not a (1,1) -dominating...
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Paired domination versus domination and packing number in graphs
PublicationGiven a graph G = (V(G), E(G)), the size of a minimum dominating set, minimum paired dominating set, and a minimum total dominating set of a graph G are denoted by γ (G), γpr(G), and γt(G), respectively. For a positive integer k, a k-packing in G is a set S ⊆ V(G) such that for every pair of distinct vertices u and v in S, the distance between u and v is at least k + 1. The k-packing number is the order of a largest kpacking and...
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Straightened characteristics of McKendrick-von Foerster equation
PublicationWe study the McKendrick-von Foerster equation with renewal (that is the age-structured model, with total population dependent coefficient and nonlinearity). By using a change of variables, the model is then transformed to a standard age-structured model in which the total population dependent coefficient of the transport term reduces to a constant 1. We use this transformation to get existence, uniqueness of solutions of the problem...
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t-SNE Highlights Phylogenetic and Temporal Patterns of SARS-CoV-2 Spike and Nucleocapsid Protein Evolution
PublicationWe propose applying t-distributed stochastic neighbor embedding to protein sequences of SARS-CoV-2 to construct, visualize and study the evolutionary space of the coronavirus. The basic idea is to explore the COVID-19 evolution space by using modern manifold learning techniques applied to evolutionary distances between variants. Evolutionary distances have been calculated based on the structures of the nucleocapsid and spike proteins.
Year 2021
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APPLICATION OF ENTROPY-BASED METHODS TO DISTINGUISH HEALTHY INDIVIDUALS WITH NORMAL SINUS RHYTHM FROM PATIENTS WITH CONGESTIVE HEART FAILURE
PublicationIn this paper, we examined whether entropy-based methods are able to differentiate healthy individuals from patients with congestive heart failure. To this aim, we applied two methods: Permutation Entropy and Block Entropy. Long-term ECG recordings (75 000 RR intervals) were analyzed. The results proved that both methods can distinguish those groups on condition that the parameters are appropriately chosen.
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Bifurcation of equilibrium forms of a gas column rotating with constant speed around its axis of symmetry
PublicationWe will be concerned with the problem of deformation of the lateral surface of a column that rotates with constant speed around its axis of symmetry. The column is filled by a gas and our goal is to investigate the deformation of the lateral surface depending on the pressure of the gas.
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Bistability in a One-Dimensional Model of a Two-Predators-One-Prey Population Dynamics System
PublicationIn this paper, we study a classical two-predators-one-prey model. The classical model described by a system of three ordinary differential equations can be reduced to a one-dimensional bimodalmap. We prove that this map has at most two stable periodic orbits. Besides, we describe the bifurcation structure of the map. Finally, we describe a mechanism that leads to bistable regimes. Taking this mechanism into account, one can easily...
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Common Independence in Graphs
PublicationAbstract: The cardinality of a largest independent set of G, denoted by α(G), is called the independence number of G. The independent domination number i(G) of a graph G is the cardinality of a smallest independent dominating set of G. We introduce the concept of the common independence number of a graph G, denoted by αc(G), as the greatest integer r such that every vertex of G belongs to some independent subset X of VG with |X|...