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Rok 2022
Rok 2021
  • Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment
    Publikacja
    • A. Antoniak
    • I. Biskupek
    • K. K. Bojarski
    • C. Czaplewski
    • A. Giełdoń
    • M. Kogut
    • M. M. Kogut
    • P. Krupa
    • A. Lipska
    • A. Liwo... i 9 innych

    - JOURNAL OF MOLECULAR GRAPHICS & MODELLING - Rok 2021

    The UNited RESidue (UNRES) force field was tested in the 14th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP14), in which larger oligomeric and multimeric targets were present compared to previous editions. Three prediction modes were tested (i) ab initio (the UNRES group), (ii) contact-assisted (the UNRES- contact group), and (iii) template-assisted (the UNRES-template...

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  • Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
    Publikacja
    • M. F. Lensink
    • G. Brysbaert
    • T. Mauri
    • N. Nadzirin
    • S. Velankar
    • R. A. G. Chaleil
    • T. Clarence
    • P. A. Bates
    • R. Kong
    • B. Liu... i 98 innych

    - PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS - Rok 2021

    We present the results for CAPRI Round 50, the 4th joint CASP-CAPRI protein assembly prediction challenge. The Round comprised a total of 12 targets, including 6 dimers, 3 trimers, and 3 higher-order oligomers. Four of these were easy targets, for which good structural templates were available either for the full assembly, or for the main interfaces (of the higher-order oligomers). Eight were difficult targets for which only distantly...

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