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TreeCmp: Comparison of Trees in Polynomial Time
PublikacjaMetryki filogenetyczne umożliwiają ocenę jakości wyników analizy filogenetycznej oraz wiarygodności algorytmów przeprowadzających taką analizę. Aplikacja TreeCmp oferuje efektywne, wielomianowe implementacje ośmiu takich metryk (dla drzew nieukorzenionych i zawierających korzeń) zdefiniowanych dla dowolnych filogenez (nie koniecznie binarnych). Program ten jako pierwszy umożliwia wyznaczanie nowych metryk, definiowanych w oparciu...
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How to meet when you forget: log-space rendezvous in arbitrary graphs
PublikacjaTwo identical (anonymous) mobile agents start from arbitrary nodes in an a priori unknown graph and move synchronously from node to node with the goal of meeting. This rendezvous problem has been thoroughly studied, both for anonymous and for labeled agents, along with another basic task, that of exploring graphs by mobile agents. The rendezvous problem is known to be not easier than graph exploration. A well-known recent result...
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Taking advantage of symmetries: Gathering of many asynchronous oblivious robots on a ring
PublikacjaOne of the recently considered models of robot-based computing makes use of identical, memoryless mobile units placed in nodes of an anonymous graph. The robots operate in Look-Compute-Move cycles; in one cycle, a robot takes a snapshot of the current configuration (Look), takes a decision whether to stay idle or to move to one of the nodes adjacent to its current position (Compute), and in the latter case makes an instantaneous...
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Fast collaborative graph exploration
PublikacjaWe study the following scenario of online graph exploration. A team of k agents is initially located at a distinguished vertex r of an undirected graph. At every time step, each agent can traverse an edge of the graph. All vertices have unique identifiers, and upon entering a vertex, an agent obtains the list of identifiers of all its neighbors. We ask how many time steps are required to complete exploration, i.e., to make sure...
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Constructing a map of an anonymous graph: applications of universal sequences
PublikacjaWe study the problem of mapping an unknown environmentrepresented as an unlabelled undirected graph. A robot (or automaton)starting at a single vertex of the graph G has to traverse the graph and return to its starting point building a map of the graph in the process. We are interested in the cost of achieving this task (whenever possible) in terms of the number of edge traversal made by the robot. Another optimization criteria...
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On a matching distance between rooted phylogenetic trees
PublikacjaThe Robinson–Foulds (RF) distance is the most popular method of evaluating the dissimilarity between phylogenetic trees. In this paper, we define and explore in detail properties of the Matching Cluster (MC) distance, which can be regarded as a refinement of the RF metric for rooted trees. Similarly to RF, MC operates on clusters of compared trees, but the distance evaluation is more complex. Using the graph theoretic approach...
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Drawing maps with advice
PublikacjaRozważamy następujący problem obliczeniowy. Agent zostaje umieszczony w wierzchołku nieznanego mu grafu. Wierzchołki grafu są nierozróżnialne, natomiast krawędzie posiadają numery portów. Zadaniem agenta jest wyznaczenie mapy, tzn. obliczenie izomorficznej kopii grafu, lub obliczenie dowolnego drzewa spinającego grafu. Bez dodatkowej informacji zadań tych nie można wykonać. W artykule wyznaczamy oszacowania na minimalną liczbę...
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Euler tour lock-in problem in the rotor-router model
PublikacjaW pracy rozważano model eksploracji grafu nieskierowanego przez pojedynczego agenta, w którym sterowanie agentem odbywa się zgodnie z zasadą ''rotor-router'' (inaczej: ''Propp machine''). Porównano czas stabilizacji agenta do trajektorii w postaci cyklu Eulera dla różnych klas grafów, prowadząc rozważania w kontekście teorii gier. Przydział początkowych portów i wskaźników w modelu jest traktowany jako rozgrywka pomiędzy graczem...
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Connections between Mutually Unbiased Bases and Quantum Random Access Codes
PublikacjaWe present a new quantum communication complexity protocol, the promise--Quantum Random Access Code, which allows us to introduce a new measure of unbiasedness for bases of Hilbert spaces. The proposed measure possesses a clear operational meaning and can be used to investigate whether a specific number of mutually unbiased bases exist in a given dimension by employing Semi--Definite Programming techniques.
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A graph coloring approach to scheduling of multiprocessor tasks on dedicated machines with availability constraints
PublikacjaWe address a generalization of the classical 1- and 2-processor unit execution time scheduling problem on dedicated machines. In our chromatic model of scheduling machines have non-simultaneous availability times and tasks have arbitrary release times and due dates. Also, the versatility of our approach makes it possible to generalize all known classical criteria of optimality. Under these stipulations we show that the problem...
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Cost minimization in wireless networks with a bounded and unbounded number of interfaces
PublikacjaPraca dotyczy problemu minimalizacji energii poprzez selektywne odłączanie urządzeń komunikacyjnych w wielointerfejsowych sieciach bezprzewodowych w taki sposób, by zapewnić realizację wymaganego grafu połączeń. Sformułowano problem optymalizacyjny, podano wyniki dotyczące jego trudności i zaproponowano algorytmy optymalizacyjne. Rozważono zarówno wariant, w którym liczba interfejsów komunikacyjnych jest parametrem stałym (narzuconym...
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Monitoring of the Process of System Information Broadcasting in Time
PublikacjaOne of the problems of quantum physics is how a measurement turns quantum, noncopyable data, towards copyable classical knowledge. We use the quantum state discrimination in a central system model to show how its evolution leads to the broadcasting of the information, and how orthogonalization and decoherence factors allow us to monitor the distance of the state in question to the one perfectly broadcasting information, in any...
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Taking advantage of symmetries: gathering of asynchronous oblivious robots on a ring
PublikacjaW pracy rozważano problem rendezvous (spotkania, zebrania) dla zbioru bezpamięciowych robotów umieszczonych na wierzchołkach cyklu nieskierowanego, niewyposażonych w urządzenia komunikacyjne. Przyjęto model systemu rozproszonego występujący w literaturze pod nazwą asynchronicznego systemu z cyklami Look-Compute-Move. Problem istnienia rozwiązania rozwiązano dla wszystkich konfiguracji poczatkowych składających się z więcej niż...
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Experimentally feasible semi-device-independent certification of four-outcome positive-operator-valued measurements
PublikacjaRecently the quantum information science community devoted a lot of attention to the theoretical and practical aspects of generalized measurements, the formalism of all possible quantum operations leading to acquisition of classical information. On the other hand, due to imperfections present in quantum devices, and limited thrust to them, a trend of formulating quantum information tasks in a semi-device-independent manner emerged....
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Edge ranking and searching in partial orders
PublikacjaArtykuł jest poświęcony problemowi konstrukcji optymalnej (wymagającej minimalnej ilości porównań/zapytań) strategii wyszukiwania elementu w częściowym porządku. W pracy wskazano związki pomiędzy tym problemem oraz uporządkowanym kolorowaniem krawędzi grafów, co implikuje liniowy algorytm dla częściowych porządków o strukturze drzewa. Pokazano również, że znalezienie optymalnej strategii jest problemem obliczeniowo trudnym dla...
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Transcriptomic landscape of blood platelets in healthy donors
PublikacjaBlood platelet RNA-sequencing is increasingly used among the scientific community. Aberrant platelet transcriptome is common in cancer or cardiovascular disease, but reference data on platelet RNA content in healthy individuals are scarce and merit complex investigation. We sought to explore the dynamics of platelet transcriptome. Datasets from 204 healthy donors were used for the analysis of splice variants, particularly with...
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Transcriptomic landscape of blood platelets in healthy donors
PublikacjaBACKGROUND Blood platelet RNA-sequencing is increasingly used among the scientific community. Aberrant platelet transcriptome is common in cancer or cardiovascular disease, but reference data on platelet RNA content in healthy individuals are scarce and merit complex investigation. METHODS We sought to explore the dynamics of platelet transcriptome. Datasets from 204 healthy donors were used for the analysis of splice variants,...
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From Pathwidth to Connected Pathwidth
PublikacjaW pracy przedstawiono dowód faktu, że spójna szerokość ścieżkowa grafu wynosi co najwyżek 2k+1, gdzie k jest jego szerokością ścieżkową. Dowód jest konstruktywny, tzn., został skonstruowany algorytm, który dla podanej na wejściu dekompozycji grafu o szerekości k zwraca dekompozycję spóją o szerekości co najwyżej 2k+1.
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Experimental certification of an informationally complete quantum measurement in a device-independent protocol
PublikacjaMinimal informationally complete positive operator-valued measures (MIC-POVMs) are special kinds of measurement in quantum theory in which the statistics of their d2-outcomes are enough to reconstruct any d-dimensional quantum state. For this reason, MIC-POVMs are referred to as standard measurements for quantum information.Here, we report an experiment with entangled photon pairs that certifies, for what we believe is the first...
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Exploiting Multi-Interface Networks: Connectivity and Cheapest Paths
PublikacjaRozważano zagadnienie minimalizacji energii w sieciach bezprzewodowych bez infrastruktury, w których niektóre węzły są wyposażone w więcej, niż jeden interfejs. W przyjętym modelu sieci podano nowe algorytmy przybliżone oraz wyniki dotyczące złożoności obliczeniowej dla dwóch problemów: aktywacji najtańszej spójnej podsieci spinającej oraz aktywacji ścieżki pomiędzy ustaloną parą węzłów.
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On the complexity of distributed graph coloring with local minimality constraints
PublikacjaArtykuł traktuje o zachłannym kolorowaniu grafów w modelu rozproszonym. Omówiono algorytmy rozproszone, dające w wyniku pokolorowanie spełniające warunki dla pokolorowań sekwencyjnych typu S oraz Largest-First (LF). Udowodniono również, że każda rozproszona implementacja algorytmu S wymaga co najmniej Omega(log n / log log n) rund, a algorytmu LF co najmniej Omega (n^{1/2}) rund, gdzie n oznacza liczbę wierzchołków grafu.
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Improving Accuracy of Contactless Respiratory Rate Estimation by Enhancing Thermal Sequences with Deep Neural Networks
PublikacjaEstimation of vital signs using image processing techniques have already been proved to have a potential for supporting remote medical diagnostics and replacing traditional measurements that usually require special hardware and electrodes placed on a body. In this paper, we further extend studies on contactless Respiratory Rate (RR) estimation from extremely low resolution thermal imagery by enhancing acquired sequences using Deep...
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Exploiting multi-interface networks: Connectivity and Cheapest Paths
PublikacjaLet G = (V,E) be a graph which models a set of wireless devices (nodes V) that can communicate by means of multiple radio interfaces, according to proximity and common interfaces (edges E). The problem of switching on (activating) the minimum cost set of interfaces at the nodes in order to guarantee the coverage of G was recently studied. A connection is covered (activated) when the endpoints of the corresponding edge share at...
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Complementarity between entanglement-assisted and quantum distributed random access code
PublikacjaCollaborative communication tasks such as random access codes (RACs) employing quantum resources have manifested great potential in enhancing information processing capabilities beyond the classical limitations. The two quantum variants of RACs, namely, quantum random access code (QRAC) and the entanglement-assisted random access code (EARAC), have demonstrated equal prowess for a number of tasks. However, there do exist specific...
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Leader election for anonymous asynchronous agents in arbitrary networks
PublikacjaWe consider the problem of leader election among mobile agents operating in an arbitrary network modeled as an undirected graph. Nodes of the network are unlabeled and all agents are identical. Hence the only way to elect a leader among agents is by exploiting asymmetries in their initial positions in the graph. Agents do not know the graph or their positions in it, hence they must gain this knowledge by navigating in the graph...
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Visual TreeCmp : Comprehensive Comparison of Phylogenetic Trees on the Web
Publikacja1. We present Visual TreeCmp—a package of applications for comparing phylogenetic tree sets. 2. Visual TreeCmp includes a graphical web interface allowing the visualization of compared trees and command line application extended by comparison methods recently proposed in the literature. 3. The phylogenetic tree similarity analysis in Visual TreeCmp can be performed using eighteen metrics, of which 11 are dedicated to rooted trees...
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Approximating the maximum 2- and 3-edge-colorable subgraph problems
PublikacjaDla ustalonej wartości parametru k>=2, problem maksymalnego podgrafu krawędziowo k-kolorowalnego polega na wskazaniu k rozłącznych skojarzeń w grafie prostym, a kryterium optymalizacji jest maksymalizacja całkowitej liczby użytych krawędzi. W pracy podano algorytmy 5/6- i 4/5-przybliżone odpowiednio dla przypadków k=2 i k=3, poprawiając wyniki znane z literatury.
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Connected searching of weighted trees
PublikacjaW pracy pokazano, że problem spójnego przeszukiwania drzew ważonych jest silnie NP-zupełny. Problem pozostaje trudnym dla drzew z jednym wierzchołkiem o stopniu większym niż 2. Ponadto, przedstawiony został wielomianowy optymalny algorytm dla klasy drzew z ograniczonym stopniem.
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Universal Augmentation Schemes for Network Navigability
PublikacjaRozważano problem uzupełniania grafu (reprezentującego np. sieci społeczne) poprzez dodanie w każdym węźle jednego dodatkowego skierowanego połączenia (długodystansowego). Dokładniej, dla każdego węzła definiuje się listę prawdopodobieństw istnienia połączenia wychodzącego z danego węzła do wszystkich pozostałych węzłów; wartości tych prawdopodobieństw muszą sumować się do jedności. Routing zachłanny w takiej sieci polega na przekazywaniu...
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What Can Be Observed Locally? Round based models for quantum distributed computing
PublikacjaW pracy rozważono zagadnienie lokalności w kontekście informacji kwantowej w obliczeniach rozproszonych. Rozważono dwa kwantowe rozszerzenia modelu LOCAL Liniala, otrzymane poprzez: (1) inicjalizację systemu w kwantowym stanie splątanym, (2) zastosowanie kwantowych kanałów komunikacyjnych. Dla obydwu typów rozszerzeń zaproponowano przykłady problemów, których złożoność rundowa ulega redukcji w porównaniu do oryginalnego modelu...
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Trees having many minimal dominating sets
PublikacjaWe provide an algorithm for listing all minimal dominating sets of a tree of order n in time O(1.4656^n). This leads to that every tree has at most 1.4656^n minimal dominating sets. We also give an infinite family of trees of odd and even order for which the number of minimal dominating sets exceeds 1.4167^n, thus exceeding 2^{n/2}. This establishes a lower bound on the running time of an algorithm for listing all minimal dominating...
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Graph Decomposition for Memoryless Periodic Exploration
PublikacjaWe consider a general framework in which a memoryless robot periodically explores all the nodes of a connected anonymous graph by following local information available at each vertex. For each vertex v, the endpoints of all edges adjacent to v are assigned unique labels within the range 1 to deg (v) (the degree of v). The generic exploration strategy is implemented using a right-hand-rule transition function: after entering vertex...
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The complexity of zero-visibility cops and robber
PublikacjaWe consider the zero-visibility cops & robber game restricted to trees. We produce a characterisation of trees of copnumber k and We consider the computational complexity of the zero-visibility Cops and Robber game. We present a heavily modified version of an already-existing algorithm that computes the zero-visibility copnumber of a tree in linear time and we show that the corresponding decision problem is NP-complete on a nontrivial...
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Zero-visibility cops and robber and the pathwidth of a graph
PublikacjaWe examine the zero-visibility cops and robber graph searching model, which differs from the classical cops and robber game in one way: the robber is invisible. We show that this model is not monotonic. We show that the zero-visibility copnumber of a graph is bounded above by its pathwidth and cannot be bounded below by any nontrivial function of the pathwidth. As well, we define a monotonic version of this game and show that the...
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Collaborative Exploration of Trees by Energy-Constrained Mobile Robots
PublikacjaWe study the problem of exploration of a tree by mobile agents (robots) that have limited energy. The energy constraint bounds the number of edges that can be traversed by a single agent. We use a team of agents to collectively explore the tree and the objective is to minimize the size of this team. The agents start at a single node, the designated root of the tree and the height of the tree is assumed to be less than the energy...
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Synchronous black hole search in directed graphs
PublikacjaThe paper considers a team of robots which has to explore a graph G, where some nodes can be harmful. Robots are initially located at the so-called home base node. The dangerous nodes are the so-called black hole nodes, and once a robot enters in one of them, it is destroyed. The goal is to find a strategy in order to explore G in such a way that minimum number of robots is wasted. The exploration ends if there is at least one...
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System information propagation for composite structures
PublikacjaWe study in details decoherence process of a spin register, coupled to a spin environment. We use recently developed methods of information transfer study in open quantum systems to analyze information flow between the register and its environment. We show that there are regimes when not only the register decoheres effectively to a classical bit string, but this bit string is redundantly encoded in the environment, making it available...
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Comparing Phylogenetic Trees by Matching Nodes Using the Transfer Distance Between Partitions
PublikacjaAbility to quantify dissimilarity of different phylogenetic trees describing the relationship between the same group of taxa is required in various types of phylogenetic studies. For example, such metrics are used to assess the quality of phylogeny construction methods, to define optimization criteria in supertree building algorithms, or to find horizontal gene transfer (HGT) events. Among the set of metrics described so far in...
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imPlatelet classifier: image‐converted RNA biomarker profiles enable blood‐based cancer diagnostics
PublikacjaLiquid biopsies offer a minimally invasive sample collection, outperforming traditional biopsies employed for cancer evaluation. The widely used material is blood, which is the source of tumor-educated platelets. Here, we developed the imPlatelet classifier, which converts RNA-sequenced platelet data into images in which each pixel corresponds to the expression level of a certain gene. Biological knowledge from the Kyoto Encyclopedia...
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Steering is an essential feature of non-locality in quantum theory
PublikacjaA physical theory is called non-local when observers can produce instantaneous effects over distant systems. Non-local theories rely on two fundamental effects: local uncertainty relations and steering of physical states at a distance. In quantum mechanics, the former one dominates the other in a well-known class of non-local games known as XOR games. In particular, optimal quantum strategies for XOR games are completely determined...
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The Potential of Greed for Independence
PublikacjaThe well-known lower bound on the independence number of a graph due to Caro and Wei can be established as a performance guarantee of two natural and simple greedy algorithms or of a simple randomized algorithm. We study possible generalizations and improvements of these approaches using vertex weights and discuss conditions on so-called potential functions p(G) : V(G) -> N_0 defined on the vertex set of a graph G for which suitably...
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Turbine stage design aided by artificial intelligence methods
PublikacjaZaproponowano ogólny, wydajny system wspomagania projektowania palisad , stopni i grupy stopni turbinowych. Zastosowane algorytmy wykorzystują algorytmy genetyczne, sieci neuronowe i obliczenia równoległe. Uzyskane rozwiązania projektowe są wysoko zoptymalizowane pod względem sprawności, a czas ich uzyskania jest o kilka rzędów wielkości mniejszy, niż przy zastosowaniu obliczeń CFD.
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Scheduling of unit-length jobs with cubic incompatibility graphs on three uniform machines
PublikacjaWe consider the problem of scheduling n identical jobs on 3 uniform machines with speeds s1, s2, and s3 to minimize the schedule length. We assume that jobs are subject to some kind of mutual exclusion constraints, modeled by a cubic incompatibility graph. We how that if the graph is 2-chromatic then the problem can be solved in O(n^2) time. If the graph is 3-chromatic, the problem becomes NP-hard even if s1>s2=s3.
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Security of Cryptocurrencies: A View on the State-of-the-Art Research and Current Developments
Publikacja[Context] The goal of security is to protect digital assets, devices, and services from being disrupted, exploited or stolen by unauthorized users. It is also about having reliable information available at the right time. [Motivation] Since the inception in 2009 of the first cryptocurrency, few studies have been undertaken to analyze and review the state-of-the-art research and current developments with respect to the security...
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Increased Certification of Semi-device Independent Random Numbers using Many Inputs and More Postprocessing
PublikacjaQuantum communication with systems of dimension larger than two provides advantages in information processing tasks. Examples include higher rates of key distribution and random number generation. The main disadvantage of using such multi-dimensional quantum systems is the increased complexity of the experimental setup. Here, we analyze a not-so-obvious problem: the relation between randomness certification and computational requirements...
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On the size of identifying codes in triangle-free graphs
PublikacjaIn an undirected graph G, a subset C⊆V(G) such that C is a dominating set of G, and each vertex in V(G) is dominated by a distinct subset of vertices from C, is called an identifying code of G. The concept of identifying codes was introduced by Karpovsky, Chakrabarty and Levitin in 1998. For a given identifiable graph G, let gammaID(G) be the minimum cardinality of an identifying code in G. In this paper, we show that for any connected...
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Self-stabilizing algorithms for graph coloring with improved performance guarantees
PublikacjaW pracy rozważa się rozproszony model obliczeń, w którym struktura systemu jest reprezentowana przez graf bezpośrednich połączeń komunikacyjnych. W tym modelu podajemy nowy samostabilizujący algorytm kolorowania grafów oparty na konstrukcji drzewa spinającego. Zgodnie z naszą wiedzą jest to pierwszy algorytm z gwarantowaną wielomianową liczbą ruchów, który dokładnie koloruje grafy dwudzielne.
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Turán numbers for odd wheels
PublikacjaThe Turán number ex(n,G) is the maximum number of edges in any n-vertex graph that does not contain a subgraph isomorphic to G. A wheel W_n is a graph on n vertices obtained from a C_{n−1} by adding one vertex w and making w adjacent to all vertices of the C_{n−1}. We obtain two exact values for small wheels: ex(n,W_5)=\lfloor n^2/4+n/2\rfloor, ex(n,W_7)=\lfloor n^2/4+n/2+1 \rfloor. Given that ex(n,W_6) is already known, this...
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Diagnostic Accuracy of Liquid Biopsy in Endometrial Cancer
PublikacjaBackground: Liquid biopsy is a minimally invasive collection of a patient body fluid sample. In oncology, they offer several advantages compared to traditional tissue biopsies. However, the potential of this method in endometrial cancer (EC) remains poorly explored. We studied the utility of tumor educated platelets (TEPs) and circulating tumor DNA (ctDNA) for preoperative EC diagnosis, including histology determination. Methods:...
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Cooperative mobile guards in grids
PublikacjaPraca dotyczy problemu strzeżenia dwuwymiarowych krat ortogonalnych, przy założeniu, że obszar widoczności strażnika obejmuje jedną ulicę oraz wszystkie ulice ją przecinające. Rozważano wariant straży słabo współpracujących, w którym dodatkowo każdy strażnik musi widzieć przynajmniej jednego innego strażnika. Podano dowód NP-trudności problemu optymalizacyjnego w przypadku ogólnym, algorytm dokładny o złożoności O(n log n) dla...
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Synchronization helps robots to detect black holes in directed graphs
PublikacjaPraca zawiera nowe wyniki dla problemu poszukiwania czarnej dziury w grafie skierowanym przez zbiór agentów. Czarna dziura jest węzłem niszczącym wszystkich wchodzącej do niej agentów. Pokazano, że w przypadku, gdy stopień wejściowy czarnej dziury wynosi D, do przeszukania grafu skierowanego w modelu synchronicznym wystarcza O(D 2^D) agentów. Wartość ta jest bliska znanemu z literatury oszacowaniu dolnemu Omega (2^D). W pracy pokazano...
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Compact cyclic edge-colorings of graphs
PublikacjaArtykuł jest poświęcony modelowi zwartego cyklicznego kolorowania krawędzi grafów. Ten wariant kolorowania jest stosowany w modelowaniu uszeregowań w systemach produkcyjnych, w których proces produkcyjny ma charakter cykliczny. W pracy podano konstrukcje grafów, które nie zezwalają na istnienie pokolorowania w rozważanym modelu. Wykazano także kilka własności teoretycznych, takich jak ograniczenia górne na liczbę kolorów w optymalnym...
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Robust amplification of Santha-Vazirani sources with three devices
PublikacjaWe demonstrate that amplification of arbitrarily weak randomness is possible using quantum resources. We present a randomness amplification protocol that involves Bell experiments. We find a Bell inequality which can amplify arbitrarily weak randomness and give a detailed analysis of the protocol involving it. Our analysis includes finding a sufficient violation of Bell inequality as a function of the initial quality of randomness....
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Rendezvous of Distance-Aware Mobile Agents in Unknown Graphs
PublikacjaWe study the problem of rendezvous of two mobile agents starting at distinct locations in an unknown graph. The agents have distinct labels and walk in synchronous steps. However the graph is unlabelled and the agents have no means of marking the nodes of the graph and cannot communicate with or see each other until they meet at a node. When the graph is very large we want the time to rendezvous to be independent of the graph size...
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Equitable coloring of graphs. Recent theoretical results and new practical algorithms
PublikacjaIn this paper we survey recent theoretical results concerning conditions for equitable colorability of some graphs and recent theoretical results concerning the complexity of equitable coloring problem. Next, since the general coloring problem is strongly NP-hard, we report on practical experiments with some efficient polynomial-time algorithms for approximate equitable coloring of general graphs.
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Parallel processing subsystems with redundancy in a distributed environment
PublikacjaW pracy rozważano problem podziału systemu rozproszonego na spójne podsystemy złożone z przynajmniej trzech jednostek, pozwalające na detekcję i skorygowanie pojedynczych błędów. Wykazano, że problem maksymalizacji liczby takich jednostek jest NP-trudny nawet dla dwuspójnych kubicznych topologii sieci. Podano też nowe algorytmy przybliżone.
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Distributed Evacuation in Graphs with Multiple Exits
PublikacjaWe consider the problem of efficient evacuation using multiple exits. We formulate this problem as a discrete problem on graphs where mobile agents located in distinct nodes of a given graph must quickly reach one of multiple possible exit nodes, while avoiding congestion and bottlenecks. Each node of the graph has the capacity of holding at most one agent at each time step. Thus, the agents must choose their movements strategy...
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On greedy graph coloring in the distributed model
PublikacjaArtykuł traktuje o zachłannym kolorowaniu grafów w modelu rozproszonym. Zaprezentowano nowy probabilistyczny algorytm dający w wyniku pokolorowanie LF. Udowodniono, że jakakolwiek rozproszona implementacja LF wymaga co najmniej D rund, gdzie D jest maksymalnym stopniem wierzchołka w grafie.
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Fast Collaborative Graph Exploration
PublikacjaWe study the following scenario of online graph exploration. A team of k agents is initially located at a distinguished vertex r of an undirected graph. At every time step, each agent can traverse an edge of the graph. All vertices have unique identifiers, and upon entering a vertex, an agent obtains the list of identifiers of all its neighbors. We ask how many time steps are required to complete exploration, i.e., to make sure...
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Three-fast-searchable graphs
PublikacjaIn the edge searching problem, searchers move from vertex to vertex in a graph to capture an invisible, fast intruder that may occupy either vertices or edges. Fast searching is a monotonic internal model in which, at every move, a new edge of the graph G must be guaranteed to be free of the intruder. That is, once all searchers are placed the graph G is cleared in exactly |E(G)| moves. Such a restriction obviously necessitates...
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The complexity of the L(p,q)-labeling problem for bipartite planar graphs of small degree
PublikacjaW pracy pokazano, że problem L(p,q)-kolorowania przy użyciu ''t'' kolorów jest NP-zupełny nawet w wersji ograniczonej do grafów planarnych dwudzielnych małego stopnia, nawet dla stosunkowo niewielkich wartości ''t''. Jako wniosek z uzyskanych wyników stwierdzono, że problem L(2,1)-kolorowania grafów planarnych przy użyciu 4 kolorów jest NP-zupełny, a także że problem L(p,q)-kolorowania grafów o maksymalnym stopniu 4 jest NP-zupełny...
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A FPTAS for minimizing total completion time in a single machine time-dependent scheduling problem
PublikacjaIn this paper a single machine time-dependent scheduling problem with total completion time criterion is considered. There are given n jobs J1,…,Jn and the processing time pi of the ith job is given by pi=a+bisi, where si is the starting time of the ith job (i=1,…,n),bi is its deterioration rate and a is the common base processing time. If all jobs have deterioration rates different and not smaller than a certain constant u>0,...
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Quantum randomness protected against detection loophole attacks
PublikacjaDevice and semi-device-independent private quantum randomness generators are crucial for applications requiring private randomness. However, they are vulnerable to detection inefficiency attacks and this limits severely their usage for practical purposes. Here, we present a method for protecting semi-device-independent private quantum randomness generators in prepare-and-measure scenarios against detection inefficiency attacks....
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An efficient algorithm for finding ideal schedules
PublikacjaPodejmujemy problem szeregowania zadań jednostkowych z zadanymi czasamy przybycia i zależnościami kolejnościowymi. Uszeregowanie jest idealne jeśli jednocześnie minimalizuje maksymalny oraz średni czas zakończenia zadania. Podajemy przyklad pokazujący, że uszeregowania idealne nie istnieją dla relacji zależności zadań będącej drzewem, gdy dopuścimy możliwość wystąpienia przerwań. Z drugiej strony podajemy algorytm o złożoności...
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2-outer-independent domination in graphs
PublikacjaWe initiate the study of 2-outer-independent domination in graphs. A 2-outer-independent dominating set of a graph G is a set D of vertices of G such that every vertex of V(G)\D has at least two neighbors in D, and the set V(G)\D is independent. The 2-outer-independent domination number of a graph G is the minimum cardinality of a 2-outer-independent dominating set of G. We show that if a graph has minimum degree at least two,...
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Bortezomib induces methylation changes in neuroblastoma cells that appear to play a significant role in resistance development to this compound
PublikacjaThe anticancer activity of bortezomib (BTZ) has been increasingly studied in a number of indications and promising results for the use of this treatment have been shown in neuroblastoma. As BTZ treatment is usually administered in cycles, the development of resistance and side effects in patients undergoing therapy with BTZ remains a major challenge for the clinical usage of this compound. Common resistance development also means...
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A note on mixed tree coloring
PublikacjaZaproponowano liniowy algorytm dla problemu kolorowania mieszanego w drzewach, uzyskując tym samym poprawę w stosunku do algorytmu o złożoności O(n^2) podanego w pracy [P. Hansen, J. Kuplinsky, D. de Werra, Mixed graph colorings, Math. Methods Oper. Res. 45 (1997) 145-160].
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Approximate search strategies for weighted trees
PublikacjaW pracy podajemy 3-przybliżony algorytm dla problemu spójnego przeszukiwania drzew ważonych.
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Equitable and semi-equitable coloring of cubic graphs and its application in batch scheduling
PublikacjaIn the paper we consider the problems of equitable and semi-equitable coloring of vertices of cubic graphs. We show that in contrast to the equitable coloring, which is easy, the problem of semi-equitable coloring is NP- complete within a broad spectrum of graph parameters. This affects the complexity of batch scheduling of unit-length jobs with cubic incompatibility graph on three uniform processors to minimize...
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Scheduling of unit-length jobs with bipartite incompatibility graphs on four uniform machines
PublikacjaThe problem of scheduling n identical jobs on 4 uniform machines with speeds s1>=s2>=s3>=s4 is considered.The aim is to find a schedule with minimum possible length. We assume that jobs are subject to mutual exclusion constraints modeled by a bipartite incompatibility graph of degree delta. We show that the general problem is NP-hard even if s1=s2=s3. If, however, delta<5 and s1>12s2 s2=s3=s4, then the problem can be solved to...
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Packing [1,Delta]-factors in graphs of small degree
PublikacjaRozważano problem znalezienia w grafie zadanej liczby k krawędziowo rozłącznych [1,Delta]-faktorów, gdzie Delta oznacza stopień grafu. Problem ten można rozwiązać w czasie liniowym dla k=2, jest on jednak NP-trudny dla każdego k>=3. Pokazano, że wariant minimalizacjny problemu dla k=2 jest NP-trudny dla grafów planarnych podkubicznych, jednak w ogólności istnieje algorytm (42 Delta - 30) / (35 Delta - 21) - aproksymacyjny.
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Bounds on the Cover Time of Parallel Rotor Walks
PublikacjaThe rotor-router mechanism was introduced as a deterministic alternative to the random walk in undirected graphs. In this model, a set of k identical walkers is deployed in parallel, starting from a chosen subset of nodes, and moving around the graph in synchronous steps. During the process, each node maintains a cyclic ordering of its outgoing arcs, and successively propagates walkers which visit it along its outgoing arcs in...
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Shared multi-processor scheduling
PublikacjaWe study shared multi-processor scheduling problem where each job can be executed on its private processor and simultaneously on one of many processors shared by all jobs in order to reduce the job’s completion time due to processing time overlap. The total weighted overlap of all jobs is to be maximized. The problem models subcontracting scheduling in supply chains and divisible load scheduling in computing. We show that synchronized...
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Bounds on the cover time of parallel rotor walks
PublikacjaThe rotor-router mechanism was introduced as a deterministic alternative to the random walk in undirected graphs. In this model, a set of k identical walkers is deployed in parallel, starting from a chosen subset of nodes, and moving around the graph in synchronous steps. During the process, each node successively propagates walkers visiting it along its outgoing arcs in round-robin fashion, according to a fixed ordering. We consider...
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Scheduling with precedence constraints: mixed graph coloring in series-parallel graphs.
PublikacjaW pracy rozważono problem kolorowania grafów mieszanych, opisujący zagadnienie szeregowania zadań, w którym zależności czasowe zadań mają charakter częściowego porządku lub wzajemnego wykluczania. Dla przypadku, w którym graf zależności jest szeregowo-równoległy, podano algorytm rozwiązujący problem optymalnie w czasie $O(n^3.376 * log n)$.
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Trade-offs in multiparty Bell-inequality violations in qubit networks
PublikacjaTwo overlapping bipartite binary input Bell inequalities cannot be simultaneously violated as this would contradict the usual no-signalling principle. This property is known as monogamy of Bell inequality violations and generally Bell monogamy relations refer to trade-offs between simultaneous violations of multiple inequalities. It turns out that multipartite Bell inequalities admit weaker forms of monogamies that allow for violations...
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Cost minimisation in multi-interface networks
PublikacjaPraca dotyczy problemu minimalizacji energii poprzez selektywne odłączanie urządzeń komunikacyjnych w wielointerfejsowych sieciach bezprzewodowych w taki sposób, by zapewnić realizację wymaganego grafu połączeń. Sformułowano problem optymalizacyjny, podano wyniki dotyczące jego trudności i zaproponowano algorytmy optymalizacyjne.
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A lower bound on the total outer-independent domination number of a tree
PublikacjaA total outer-independent dominating set of a graph G is a set D of vertices of G such that every vertex of G has a neighbor in D, and the set V(G)D is independent. The total outer-independent domination number of a graph G, denoted by gamma_t^{oi}(G), is the minimum cardinality of a total outer-independent dominating set of G. We prove that for every nontrivial tree T of order n with l leaves we have gamma_t^{oi}(T) >= (2n-2l+2)/3,...
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Rendezvous of heterogeneous mobile agents in edge-weighted networks
PublikacjaWe introduce a variant of the deterministic rendezvous problem for a pair of heterogeneous agents operating in an undirected graph, which differ in the time they require to traverse particular edges of the graph. Each agent knows the complete topology of the graph and the initial positions of both agents. The agent also knows its own traversal times for all of the edges of the graph, but is unaware of the corresponding traversal...
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Robustness of the Rotor-router Mechanism
PublikacjaW pracy rozważano model eksploracji grafu nieskierowanego przez pojedynczego agenta, w którym sterowanie agentem odbywa się zgodnie z zasadą ''rotor-router'' (inaczej: ''Propp machine''). Przeanalizowano czas stabilizacji agenta do trajektorii w postaci cyklu Eulera w przypadku wystąpienia zaburzeń w grafie: usunięcie krawędzi, dodanie krawędzi, lokalna zamiana portów
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New potential functions for greedy independence and coloring
PublikacjaA potential function $f_G$ of a finite, simple and undirected graph $G=(V,E)$ is an arbitrary function $f_G : V(G) \rightarrow \mathbb{N}_0$ that assigns a nonnegative integer to every vertex of a graph $G$. In this paper we define the iterative process of computing the step potential function $q_G$ such that $q_G(v)\leq d_G(v)$ for all $v\in V(G)$. We use this function in the development of new Caro-Wei-type and Brooks-type...
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Tighter bounds on the size of a maximum P3-matching in a cubic graph
PublikacjaW pracy pokazano, że największe P3-skojarzenie dla dowolnego grafu o n>16 wierzchołkach składa się z przynajmniej 117n/152 wierzchołków.
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An upper bound on the 2-outer-independent domination number of a tree
PublikacjaA 2-outer-independent dominating set of a graph G is a set D of vertices of G such that every vertex of V(G)D has a at least two neighbors in D, and the set V(G)D is independent. The 2-outer-independent domination number of a graph G, denoted by gamma_2^{oi}(G), is the minimum cardinality of a 2-outer-independent dominating set of G. We prove that for every nontrivial tree T of order n with l leaves we have gamma_2^{oi}(T) <= (n+l)/2,...
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Graph decomposition for improving memoryless periodic exploration
PublikacjaW ostatnich latach często badanym problem jest eksploracja anonimowych grafów z lokalnymi etykietami portów przy każdym wierzchołku. Niedawno pokazano [Czyzowicz et al., Proc. SIROCCO'09], że dla każdego grafu istnieje poetykietowanie prowadzące do eksploracji przez automat bezpamięciowy z okresem co najwyżej 13n/3. W niniejszej pracy poprawiamy to ograniczenie do 4n-2, stosując całkowicie nową technikę dekompozycji grafu.
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Distributed graph searching with a sense of direction
PublikacjaIn this work we consider the edge searching problem for vertex-weighted graphs with arbitrarily fast and invisible fugitive. The weight function w provides for each vertex v the minimum number of searchers required to guard v, i.e., the fugitive may not pass through v without being detected only if at least w(v) searchers are present at v. This problem is a generalization of the classical edge searching problem, in which one has...
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Lossless Compression of Binary Trees with Correlated Vertex Names
PublikacjaCompression schemes for advanced data structures have become the challenge of today. Information theory has traditionally dealt with conventional data such as text, image, or video. In contrast, most data available today is multitype and context-dependent. To meet this challenge, we have recently initiated a systematic study of advanced data structures such as unlabeled graphs [1]. In this paper, we continue this program by considering...
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Comparing phylogenetic trees using a minimum weight perfect matching
PublikacjaA phylogenetic tree represents historical evolutionary relationshipbetween different species or organisms. There are various methods for reconstructing phylogenetic trees.Applying those techniques usually results in different treesfor the same input data. An important problem is to determinehow distant two trees reconstructed in such a wayare from each other. Comparing phylogenetic trees is alsouseful in mining phylogenetic information...
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An approximation algorithm for maximum P3-packing in subcubic graphs
PublikacjaW pracy podano algorytm 4/3-przyliżony dla trudnego obliczeniowo problemu umieszczania wierzchołkowo rozłącznych dwukrawędziowych ścieżek w grafach o stopniu maksymalnym 3 i stopniu minimalnym 2. Poprawiono tym samym wcześniejsze wyniki dla grafów kubicznych (A. Kelmans, D. Mubayi, Journal of Graph Theory 45, 2004).
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2-bondage in graphs
PublikacjaA 2-dominating set of a graph G=(V,E) is a set D of vertices of G such that every vertex of V(G)D has at least two neighbors in D. The 2-domination number of a graph G, denoted by gamma_2(G), is the minimum cardinality of a 2-dominating set of G. The 2-bondage number of G, denoted by b_2(G), is the minimum cardinality among all sets of edges E' subseteq E such that gamma_2(G-E') > gamma_2(G). If for every E' subseteq E we have...
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Deterministic Rendezvous in Restricted Graphs
PublikacjaIn this paper we consider the problem of synchronous rendezvous in which two anonymous mobile entities (robots) A and B are expected to meet at the same time and point in a graph G = (V;E). Most of the work devoted to rendezvous in graphs assumes that robots have access to the same sets of nodes and edges, where the topology of connections may be initially known or unknown. In our work we assume the movement of robots is restricted...
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Device-independent quantum key distribution based on measurement inputs
PublikacjaWe provide an analysis of a family of device-independent quantum key distribution (QKD) protocols that has the following features. (a) The bits used for the secret key do not come from the results of the measurements on an entangled state but from the choices of settings. (b) Instead of a single security parameter (a violation of some Bell inequality) a set of them is used to estimate the level of trust in the secrecy of the key....
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Approximation Strategies for Generalized Binary Search in Weighted Trees
PublikacjaWe consider the following generalization of the binary search problem. A search strategy is required to locate an unknown target node t in a given tree T. Upon querying a node v of the tree, the strategy receives as a reply an indication of the connected component of T\{v} containing the target t. The cost of querying each node is given by a known non-negative weight function, and the considered objective is to minimize the total...
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Collaborative Delivery by Energy-Sharing Low-Power Mobile Robots
PublikacjaWe study two variants of delivery problems for mobile robots sharing energy. Each mobile robot can store at any given moment at most two units of energy, and whenever two robots are at the same location, they can transfer energy between each other, respecting the maximum capacity. The robots operate in a simple graph and initially each robot has two units of energy. A single edge traversal by an robot reduces its energy by one...
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Blurred quantum Darwinism across quantum reference frames
PublikacjaQuantum Darwinism describes objectivity of quantum systems via their correlations with their environment--information that hypothetical observers can recover by measuring the environments. However, observations are done with respect to a frame of reference. Here, we take the formalism of [Giacomini, Castro-Ruiz, & Brukner. Nat Commun 10, 494 (2019)], and consider the repercussions on objectivity when changing quantum reference...
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Cops, a fast robber and defensive domination on interval graphs
PublikacjaThe game of Cops and ∞-fast Robber is played by two players, one controlling c cops, the other one robber. The players alternate in turns: all the cops move at once to distance at most one each, the robber moves along any cop-free path. Cops win by sharing a vertex with the robber, the robber by avoiding capture indefinitely. The game was proposed with bounded robber speed by Fomin et al. in “Pursuing a fast robber on a graph”,...
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Modelling of dark fermentation of glucose and sour cabbage
PublikacjaIn the article, modified Anaerobic Digestion Models 1 (ADM-1) was tested for modelling dark fermentation for hydrogen production. The model refitting was done with the Euler method. The new model was based on sets of differential equations. The model was checked for hydrogen production from sour cabbage in batch and semi-batch in 5 g VSS (volatile solid suspension)/L and at the semi-batch process from glucose at 5 and 10 g VSS/L....
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Parity vertex colouring of graphs
PublikacjaA parity path in a vertex colouring of a graph is a path along which each colour is used an even number of times. Let Xp(G) be the least number of colours in a proper vertex colouring of G having no parity path. It is proved that for any graph G we have the following tight bounds X(G) <= Xp(G) <=|V(G)|− a(G)+1, where X(G) and a(G) are the chromatic number and the independence number of G, respectively. The bounds are improved for...
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Cost minimisation in unbounded multi-interface networks
PublikacjaW pracy badano problem odłączania niektórych urządzeń komunikacyjnych w wielointerfejsowych sieciach bezprzewodowych w taki sposób, by zapewnić realizację wymaganego grafu połączeń przy jednoczesnej minimalizacji zużycia energii. Sformułowano problem optymalizacyjny, podano wyniki dotyczące jego trudności i zaproponowano algorytmy optymalizacyjne dla wariantu, w którym liczba interfejsów komunikacyjnych jest potencjalnie nieograniczona...
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On trees with equal 2-domination and 2-outer-independent domination numbers
PublikacjaFor a graph G = (V,E), a subset D \subseteq V(G) is a 2-dominating set if every vertex of V(G)\D$ has at least two neighbors in D, while it is a 2-outer-independent dominating set if additionally the set V(G)\D is independent. The 2-domination (2-outer-independent domination, respectively) number of G, is the minimum cardinality of a 2-dominating (2-outer-independent dominating, respectively) set of G. We characterize all trees...
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Distinguishing views in symmetric networks: A tight lower bound
PublikacjaThe view of a node in a port-labeled network is an infinite tree encoding all walks in the network originating from this node. We prove that for any integers n ≥ D ≥ 1, there exists a port-labeled network with at most n nodes and diameter at most D which contains a pair of nodes whose (infinite) views are different, but whose views truncated to depth Omega( D log(n/ D )) are identical.