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Catalog Publications
Year 2016
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Identification of 1H‐indene‐(1, 3, 5, 6)‐tetrol derivatives as potent pancreatic lipase inhibitors using molecular docking and molecular dynamics approach
PublicationPancreatic lipase is a potential therapeutic target to treat diet-induced obesity in humans, as obesity-related diseases continue to be a global problem. Despite intensive research on finding potential inhibitors, very few compounds have been introduced to clinical studies. In this work, new chemical scaffold 1H-indene-(1,3,5,6)-tetrol was proposed using knowledge-based approach, and 36 inhibitors were derived by modifying its...
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Influence of separation gap on the response of colliding models of steel structures under seismic and paraseismic excitations
PublicationAs a result of high urbanization, the need to erect closely-spaced buildings forces designers to consider collisions between structures taking place during ground motions. Experimental and numerical studies have confirmed that such collisions (often referred to as structural pounding) may cause serious damage to the structural elements and even lead to total collapse of colliding structures. The main reason of earthquake-induced...
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Investigation on Damage-Involved Structural Response of Colliding Steel Structures during Ground Motions
PublicationEarthquakes are the most unpredictable damaging loads which can affect civil engineering structures. Due to insufficient separation distance between adjacent structures with different dynamic properties, structural collisions may occur during ground motions. Although the research on structural pounding has recently been much advanced, the studies have mainly been conducted for concrete structures. The aim of this paper is to show...
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Kriging Models for Microwave Filters
PublicationSurrogate modeling of microwave filters’ response is discussed. In particular, kriging is used to model either the scattering parameters of the filter or the rational representation of the filter’s characteristics. Surrogate models for these two variants of kriging are validated in solving a microwave filter optimization problem. A clear advantage of surrogate models based on the rational representation over the models based on scattering...
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Linking of adjacent three-storey buildings for mitigation of structural pounding during earthquakes
PublicationThe reports after major earthquakes indicate that the earthquake-induced pounding between insufficiently separated buildings may lead to significant damage or even total collapse of structures. An intensive study has recently been carried out on mitigation of pounding hazards so as to minimize the structural damages or prevent collisions at all. The aim of this paper is to investigate the effectiveness of the method when two adjacent...
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Low-Cost Surrogate Models for Microwave Filters
PublicationA novel low-cost kriging-based multivariable parametric macromodeling technique for microwave filters is presented. Kriging is used to model both the residues and poles of a microwave filter's reflection coefficient, and the zeros of the transmission coefficient. The proposed residue-pole-zero (RPZ) technique is demonstrated to efficiently model a high dimensional (8D) microwave filter with pseudoelliptic characteristics.
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Macromodeling techniques for accelerated finite element analysis
PublicationThis paper deals with the Model Order Reduction applied locally in the Finite Element Method (FEM) analysis. Due to the reduction process, blocks of FEM system matrices associated with selected subregions of the computational domain are projected onto the subspaces spanned by the vectors of suited orthogonal projection basis. In effect, large and sparse FEM matrices are replaced with small and dense ones, called macromodels. This...
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Mathematical Modelling of a Seismic Isolation System to Protect Structures During Damaging Earthquakes
PublicationThe present study aims to determine the effectiveness of a nonlinear mathematical model in simulating complex mechanical behaviour of a seismic isolation system to protect structures during strong and damaging earthquakes. In order to construct the Polymeric Bearings considered in this research, a specially prepared flexible polyurethane elastomer with increased damping properties has been used. The usefulness of the proposed mathematical...
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Membrane Sterols Modulate the Binding Mode of Amphotericin B without Affecting Its Affinity for a Lipid Bilayer
PublicationMembrane-active antibiotics are known to selectively target certain pathogens based on cell membrane properties, such as fluidity, lipid ordering, and phase behavior. These are in turn modulated by the composition of a lipid bilayer and in particular by the presence and type of membrane sterols. Amphotericin B (AmB), the golden standard of antifungal treatment, exhibits higher activity toward ergosterol-rich fungal membranes, which...
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MODAL ANALYSIS OF REAL TIMBER FRAME HOUSES WITH DIFFERENT INSULATION MATERIALS
PublicationThe aim of this article is to present the results of a numerical modal analysis of two actual structures of timber frame buildings and the different behaviour due to the used insulation material. One model of the timber structure was filled with mineral wool, while the other with polyurethane foam. During the modal analysis, eigenvalues for both models have been determined. The results of the analysis clearly show the increase...
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Numerical study on pounding between two adjacent buildings under earthquake excitation
PublicationSeismic excitation, which results in large horizontal relative displacements, may cause collisions between two adjacent structures due to insufficient separation distance between them. Such collisions, known as earthquake-induced structural pounding, may induce severe damages. In this paper, the case of pounding between two adjacent buildings is studied by the application of single degree-of-freedom structural models. Impact is...
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Pounding between Inelastic Three-Storey Buildings under Seismic Excitations
PublicationStructural interactions between adjacent, insufficiently separated buildings have been repeatedly observed during damaging ground motions. This phenomenon, known as the structural pounding, may result in substantial damage or even total collapse of structures. The aim of the present paper is to show the results of the nonlinear numerical analysis focused on pounding between inelastic three-storey buildings under seismic excitations....
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PROBLEMS OF COLLISIONS BETWEEN ADJACENT STEEL STRUCTURES UNDER EARTHQUAKE EXCITATION
PublicationNowadays, the high level of urbanization forces the engineers to design closely-separated structures and to take into account many factors influencing their response, including collisions between them due to insufficient separation distance during moderate to strong ground motions. Recent observations as well as experimental and numerical investigations have confirmed that interactions...
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Review of the Usefulness of Various Rotational Seismometers with Laboratory Results of Fibre-Optic Ones Tested for Engineering Applications
PublicationStarting with descriptions of rotational seismology, areas of interest and historical field measurements, the fundamental requirements for rotational seismometers for seismological and engineering application are formulated. On the above basis, a review of all existing rotational seismometers is presented with a description of the principles of their operation as well as possibilities to fulfill formulated requirements. This review...
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Substrate-integrated waveguide (SIW) filter design using space mapping
PublicationIn this paper, we present a fast technique for an automated design of microwave filters in substrate integrated wave (SIW) technology. The proposed methodology combines the space mapping technique with a cost function defined using the location of complex zeros and poles of filter’s transfer and reflection function and uses a rectangular waveguide as a surrogate model. The effectiveness of the proposed technique is presented with...
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Teaching civil engineering in English at Gdansk University of Technology
PublicationThe effects of globalization, as well as many possibilities of easy and cheap ways of travelling, have led to the increase in number of different types of university studies conducted in English. This paper describes advantages and disadvantages after seven years of experience of conducting three-semester MSc Studies in Civil Engineering in English at Gdansk University of Technology, Poland. The studies started in 2009 after a...
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The application of neural networks in forecasting the influence of traffic-induced vibrations on residential buildings
PublicationTraffic-induced vibrations may cause the cracking of plaster, damage to structural elements and, in extreme cases, may even lead to the structural collapse of residential buildings. The aim of this article is to analyse the effectiveness of a method of forecasting the impact of vibrations on residential buildings using the concept of artificial intelligence. The article presents several alternative forecasting systems for which...
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The Effectiveness of Polymer Damper in Damage Reduction of Temporary Steel Grandstand
PublicationA large number of accidents involving damage of temporary grandstands during different types of events were observed in the past. The aim of the paper is to analyse numerically the effectiveness of a polymer damper in damage reduction of a temporary steel scaffolding grandstand exposed to dynamic load due to jumping. The element has been installed as a diagonal one at the back part of the structure. The method has been compared...
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The response of three colliding models of steel towers to seismic excitation
PublicationA number of past and recent observations have confirmed that collisions between adjacent, insufficiently-separated structures occurring as a result of seismic excitation (structural pounding) may result in serious damage to structural elements and can even lead to their total destruction. This paper summarises the results obtained from a shaking table experimental study which investigated structural pounding between three adjacent...
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Timber-frame house resistant to dynamic loads - analysis of wall panel filled with polyurethane foam
PublicationThe present study shows the experimentally and numerically determined response of a single timber-frame house wall panel filled with polyurethane (PU) foam under dynamic loads. The harmonic tests were conducted for the following frequencies: 0.5 Hz, 1.0 Hz, 2.0 Hz and 5.0 Hz for various values of the specified displacement. Based on the results of the comparison between the experimental tests and the numerical analyses, the numerical...
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Wpływ zderzaków na odpowiedź kolidujacych ze sobą konstrukcji stalowych poddanych obciążeniom sejsmicznym
PublicationXXI wiek oraz bardzo wysoki poziom urbanizacji stanowi duże wyzwanie dla inżynierów. Stopień zagęszczenia budynków, z uwagi na coraz mniejsze możliwości wykorzystywania terenów pod zabudowę, jest ważnym czynnikiem branym pod uwagę podczas projektowania budynków – szczególnie tych, które leżą w strefach zagrożonych wstrząsami sejsmicznymi. Obciążenia sejsmiczne są jednymi z najbardziej nieprzewidywalnych i katastrofalnych w skutkach...
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Wykorzystanie sztucznych sieci neuronowych do szacowania wpływu drgań na budynki jednorodzinne
PublicationW artykule przedstawiono metodę prognozowania wpływu drgań na budynki mieszkalne z wykorzystaniem sztucznych sieci neuronowych. Drgania komunikacyjne mogą doprowadzić do uszkodzenia elementów konstrukcyjnych, a nawet do awarii budynku. Najczęstszym efektem są jednak rysy, pękanie tynku i wypraw. Metody oparte na sztucznej inteligencji są przybliżone, ale stanowią wystarczająco dokładną i ekonomiczną alternatywę dla tradycyjnych...
Year 2015
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A Goal-Oriented Error Estimator for Reduced Basis Method Modeling of Microwave Devices
PublicationThis letter proposes a novel a-posteriori error estimator suitable for the reduced order modeling of microwave circuits. Unlike the existing error estimators based on impedance function residuals, the new one exploits the residual error associated with the computation of the scattering matrix. The estimator can be effectively used in the Reduced Basis Method (RBM) to automatically generate reduced-order models. The results of numerical...
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A Task-Scheduling Approach for Efficient Sparse Symmetric Matrix-Vector Multiplication on a GPU
PublicationIn this paper, a task-scheduling approach to efficiently calculating sparse symmetric matrix-vector products and designed to run on Graphics Processing Units (GPUs) is presented. The main premise is that, for many sparse symmetric matrices occurring in common applications, it is possible to obtain significant reductions in memory usage and improvements in performance when the matrix is prepared in certain ways prior to computation....
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Automated Reduced Model Order Selection
PublicationThis letter proposes to automate generation of reduced-order models used for accelerated -parameter computation by applying a posteriori model error estimators. So far,a posteriori error estimators were used in Reduced Basis Method (RBM) and Proper Orthogonal Decomposition (POD) to select frequency points at which basis vectors are generated. This letter shows how a posteriori error estimators can be applied to automatically select...
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Badania eksperymentalne modelu zbiornika stalowego poddanego wstrząsom górniczym i sejsmicznym
PublicationCelem niniejszego artykułu jest przedstawienie wyników badań eksperymentalnych dotyczących odporności na wstrząsy górnicze i trzęsieni ziemi konstrukcji stalowych zbiorników walcowych. Badania przeprowadzono na stole sejsmicznym poddając wymuszeniom dynamicznym model zbiornika przy różnym poziomie wypełnienia wodą. Wyniki badań pokazują, iż poziom wypełnienia ma istotny wpływ na zachowanie się zbiornika. Zauważono, iż wypełniania...
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Badania właściwości elastomeru polimerowego jako materiału do redukcji drgań budowli poddanych obciążeniom sejsmicznym i parasejsmicznym
PublicationCelem niniejszej pracy jest przedstawienie wyników badań eksperymentalnych, przeprowadzonych na próbkach wykonanych z elastomeru polimerowego, wykorzystywanego w metodzie złączy podatnych. W referacie zaprezentowano wyniki badań statycznych dla ściskania oraz rozciągania, a także rezultaty z dynamiczno-mechanicznej analizy termicznej (DMA), której celem było przedstawienie zmian modułu zachowawczego, modułu stratności oraz tangensa...
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Building damage due to structural pounding during earthquakes
PublicationEarthquake-induced pounding between adjacent buildings has been identified as one of the reasons for substantial damage or even total collapse of colliding structures. A major reason leading to interactions in buildings results from the differences in their dynamic parameters and also from insufficient distance between the structures. Although the research on structural pounding has been much advanced, the studies have mainly been...
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CONSTRUCTION TECHNOLOGY OF TIMBER-FRAME HOUSES RESISTANT TO DYNAMIC LOADS – STUDY ON MODELS OF EXTERIOR WALLS
PublicationThe aim of this paper is to show the numeric representation of experimental studies concerning the behaviour of exterior wall models of a timber-frame house under harmonic loading. A single wall model according to traditional technology of timberframe house walls (filling with mineral wool) was tested. The analysis was conducted for the following frequencies: 0.5 Hz, 1.0 Hz, 2.0 Hz and 5.0 Hz for various values of the specified...
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Degradacja sztywności słupów budynku na skutek działania pionowego obciążenia uderzeniowego w czasie wstrząsów sejsmicznych
PublicationCelem niniejszego artykułu jest przedstawienie wyników badań dotyczących zachowania się słupów budynku poddanych deformacji poziomej (skutek działania sił sejsmicznych) oraz jednocześnie pionowemu obciążeniu uderzeniowemu (skutek awarii tzw. słabego piętra) podczas wstrząsów sejsmicznych. Wyniki badań pokazują, iż degradacja sztywności słupów na skutek działania obciążenia uderzeniowego może mieć zasadnicze znaczenie prowadząc...
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Earthquake-induced pounding between superstructure segments of isolated bridge
PublicationThe use of seismic isolation in bridges is considered as one of the most promising advanced technologies to enhance the structural safety during earthquakes. However, the method results in larger displacements of superstructure segments increasing the probability of pounding between them. Reports after severe ground motions show that the earthquake-induced structural pounding may lead to significant damage in isolated bridges....
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Earthquake–induced pounding on response of adjacent structures in series: experimental and numerical study
PublicationPounding between structures in series during earthquakes may cause serious damage in the structur-al elements. The aim of this paper is to show the results of an experimental and numerical study that is focused on pounding between more than two structures which may be called "structures in series". In this study, the shaking table experiments, as well as the numerical analyses, were performed using three tower models including...
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Earthquake-Induced Structural Pounding
PublicationEarthquake-induced structural pounding between insufficiently separated build-ings, or bridge segments, has been repeatedly observed during ground motions. The reports after earthquakes indicate that it may lead to some local damage in the case of moderate seismic events or may result in considerable destruction or even collapse of colliding structures during severe ground motions. Pounding in build-ings is usually caused by the...
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Enhancing the Seismic Resistance of Columns by GFRP Confinement Using Flexible Adhesive-Experimental Study
PublicationIn this paper, the results of two experiments, focused on testing the effectiveness of a method of enhancing the seismic (dynamic) resistance of masonry columns with the use of flexible polymer adhesive, are shown. The first experiment was devoted to investigate the damping properties of a polymer working between two stiff layers, whereas the aim of the second one was to verify if the identified damping properties of the polymer...
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Experimental and Numerical Study on Pounding of Structures in Series
PublicationPounding between structures in series during earthquakes may cause serious damage in the structural elements. The aim of this paper is to show the results of an experimental and numerical study that is focused on pounding between more than two structures which may be described as “structures in series”. In this study, the shaking table experiments, as well as the numerical analyses, were performed using three tower models including...
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Experimental Study on Pounding between Structures during Damaging Earthquakes
PublicationMutual pounding between structures during earthquakes may cause serious structural damage. The aim of this paper is to show the results of a shaking table experimental study focused on pounding between structures in series under several earthquake excitations. The experiments were performed using three tower models with different configurations and different gap distances between them. In the first stage of the study, one rigid...
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Experimental Study on Steel Tank Model Using Shaking Table/ Badania Eksperymentalne Modelu Zbiornika Stalowego Na Stole Sejsmicznym
PublicationStalowe zbiorniki walcowe są bardzo popularnymi konstrukcjami używanymi do magazynowania produktów przemysłu chemicznego i naftowego. Ich bezpieczeństwo i niezawodność są kluczowe, ponieważ każde uszkodzenie może nieść za sobą bardzo poważne konsekwencje. Trzęsienia ziemi są najbardziej niebezpiecznymi, a zarazem najbardziej nieprzewidywalnymi obciążeniami dynamicznymi, które mogą oddziaływać na tego typu konstrukcje. Z drugiej...
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Experimental study on the effectiveness of polymer damper in damage reduction of temporary steel grandstand
PublicationA large number of accidents, involving collapses of temporary grandstands during different types of events, were observed in the past. If the synchronized movement of people is tuned with the natural frequency of the affected part of the structure, resonance might occur. It may lead to severe damages of grandstands, their collapse or panic among the spectators. The aim of the paper is to assess, through preliminary experimental...
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Idea zastosowania sztucznej inteligencji w prognozowaniu wpływu drgań komunikacyjnych na odpowiedź dynamiczną budynków mieszkalnych
PublicationW poniższym artykule autorzy analizują wpływ drgań komunikacyjnych na budynki mieszkalne oraz metodykę pomiarową według PN-85 B-02170 [1]. Problemem badawczym jest opracowanie prostej metody prognozowania wpływu drgań na budynki mieszkalne w taki sposób, aby nie było konieczne przeprowadzanie pracochłonnych i kosztownych pomiarów polowych. W tym celu wykonano analizę przy użyciu algorytmów opartych na sztucznej inteligencji oraz...
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Influence of separation gap on the structural response of colliding structures under earthquake excitation
PublicationThe high level of urbanization in the XXIst century forces the designers to design closely-separated structures and to take into account many factors influencing their response during seismic excitation, which are the most unpredictable loads which can affect civil engineering structures. Interactions between insufficiently adjacent buildings, known as the earthquake-induced structural pounding, may cause serious damage to the structures,...
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Interaction of cisplatin and two potential antitumoral platinum(ii) complexes with a model lipid membrane: a combined NMR and MD study
PublicationIn this study, the interaction of cisplatin (1) and two potential antitumoral Pt(II) complexes (2 and 3) with a model DMPC bilayer was investigated by multinuclear NMR spectroscopy and MD simulations in order to understand its implication for the different antitumoral properties shown by the three complexes. In particular, 31P, 13C and 2H solid state NMR experiments were performed to obtain information on the phase structure, phase...
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Miniaturized bandpass substrate integrated waveguide filter with frequency-dependent coupling realized using asymmetric GCPW discontinuity
PublicationAn asymmetric GCPW discontinuity is proposed to provide frequency-dependent coupling in microwave bandpass filters. Wider and narrow sections introduce, respectively, the capacitive and inductive component to the equivalent circuit representing coupling. By selecting the dimensions of the discontinuity and width of the inductive window in substrate integrated waveguide, an additional transmission zero can be introduced at prescribed...
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Model Order Reduction for Problems With Dispersive Surface Boundary Conditions
PublicationThis letter proposes a new scheme for reduced-order finite-element modeling of electromagnetic structures with nonlinear, dispersive surface boundary conditions, which optimally exploits the numerically stable and efficient MOR framework for second-order systems provided by SAPOR method. The presented results of numerical experiments for an example of a waveguide filter demonstrate the superior accuracy of the resulting reduced models...
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NUMERYCZNA ANALIZA ZACHOWANIA SIĘ KOLIDUJĄCYCH ZE SOBĄ BUDYNKÓW STALOWYCH PODDANYCH OBCIĄŻENIOM SEJSMICZNYM
PublicationCelem niniejszego artykułu jest przedstawienie wyników nieliniowej analizy numerycznej dotyczącej zachowania się dwóch budynków o konstrukcji stalowej zderzających się ze sobą w wyniku oddziaływań sejsmicznych. W badaniach uwzględniono wpływ efektu prędkości odkształcenia na zachowanie się budowli, co dotychczas nie było analizowane. Model numeryczny oraz analiza dynamiczna, dla składowej NS trzęsienia ziemi El Centro z 1940 roku,...
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Ocena efektywności modelu matematycznego do opisu nieliniowego zachowania wibroizolacji sejsmicznej w postaci łożysk polimerowych
PublicationW pracy została dokonana ocena efektywności modelu matematycznego, opisującego nieliniowe zachowanie prototypu wibroizolacji sejsmicznej w postaci łożysk polimerowych. Do budowy łożysk polimerowych został wykorzystany elastomer poliuretanowy, który charakteryzuje się dobrymi właściwościami tłumiącymi. Wyniki badań materiałowych przeprowadzonych dla analizowanego polimeru zostały przedstawione we wcześniejszych publikacjach. W zaproponowanym...
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Pounding Between Superstructure Segments in Multi-Supported Elevated Bridge with Three-Span Continuous Deck Under 3D Non-Uniform Earthquake Excitation
PublicationReports after severe ground motions show that the earthquake-induced structural pounding may lead to significant damage in elevated bridges. The aim of this paper is to analyse pounding between superstructure segments of a highway elevated bridge with three-span continuous deck under 3D non-uniform earthquake excitation, which is induced by spatial seismic effects related to the propagation of seismic wave. The conditional stochastic...
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SiMiSnoRNA: Collection of siRNA, miRNA, and snoRNA database for RNA Interference
PublicationObjective:The discovery of sequence specific gene silencing which occurs due to the presence of double-stranded RNAs has considerable impact on biology, revealing an unknown level of regulation of gene expression. This process is known as RNA interference (RNAi) or RNA silencing in which RNA molecules inhibit gene expression, typically by causing the destruction of specific mRNA molecule. Two types of small RNA molecules - small...
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Structural and dynamic changes adopted by EmrE, multidrug transporter protein—Studies by molecular dynamics simulation
PublicationEmrE protein transports positively charged aromatic drugs (xenobiotics) in exchange for two protons and thus provides bacteria resistance to variety of drugs. In order to understand how this protein may recognize ligands, the monomer and asymmetric apo-form of the EmrE dimer embedded in a heterogeneous phospholipid (POPE + POPG) membrane were studied by molecular dynamics simulations. Dimer is regarded as a functional form of the...
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Systems of boundary value problems of advanced differential equations
PublicationThis paper considers the existence of extremal solutions to systems of advanced differential equations with corresponding nonlinear boundary conditions. The monotone iterative method is applied to obtain the existence results. An example is provided for illustration.
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VIBRATION PROBLEMS OF AN EXAMPLE OF TEMPORARY STEEL GRANDSTAND UNDER HUMAN-INDUCED EXCITATION
PublicationLighter and slender structural members of a typical grandstand leads to a significant reduction in the frequencies, that is why such structures are more easily induced to vibrations. The aim of the present paper is to show the results of our experimental studies and the numerical analyses, focused on the behaviour of a part of a typical temporary steel grandstand under dynamic loads. The peak values of accelerations of a steel...