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Analyzing sets of phylogenetic trees obtained from bayesian MCMC process using topology metrics

Abstract

The reconstruction of evolutionary trees is one of the primary objectives in phylogenetics. Such a tree represents historical evolutionary relationship between different species or organisms. Tree comparisons are used for multiple purposes, from unveiling the history of species to deciphering evolutionary associations amongorganisms and geographical areas.In the paper, we describe a general method for comparing hylogenetic trees. We focus on four metrics for binary unrooted trees. We present results of a computational experiment concerning an application of those metrics to estimating the quality of a phylogenetic signal.

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Category:
Conference activity
Type:
publikacja w wydawnictwie zbiorowym recenzowanym (także w materiałach konferencyjnych)
Title of issue:
Applications of mathematics in biology and medicine, Krajowa konferencja zastosowan w biologii i medycynie : proceedings of the fifteenth national conference, Szczyrk, 15-19 september 2009 strony 20 - 26
Language:
English
Publication year:
2009
Bibliographic description:
Bogdanowicz D.: Analyzing sets of phylogenetic trees obtained from bayesian MCMC process using topology metrics// Applications of mathematics in biology and medicine, Krajowa konferencja zastosowan w biologii i medycynie : proceedings of the fifteenth national conference, Szczyrk, 15-19 september 2009/ ed. (eds.) Krzysztof Psiuk-Maksymowicz, Damian Borys. Institute of Automatic Control, Faculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology. Gliwice: Silesian University of Technology, Institute of Automatic Control, 2009, s.20-26
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Gdańsk University of Technology

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