Search
Abstract
Objective:The discovery of sequence specific gene silencing which occurs due to the presence of double-stranded RNAs has considerable impact on biology, revealing an unknown level of regulation of gene expression. This process is known as RNA interference (RNAi) or RNA silencing in which RNA molecules inhibit gene expression, typically by causing the destruction of specific mRNA molecule. Two types of small RNA molecules - small interfering RNA (siRNA) and microRNA (miRNA) are central to RNA interference. Therefore, SiMiSnoRNA database has been developed to focus on the efficient storage of RNA interferences or small RNA sequences and qualitative analysis of its structures across variety of organisms. Method:SiMiSnoRNA database is developed using WAMP server which implements Apache, MySQL, and PHPas principal components. Result and Conclusion:A flexible web-based search engine is developed to obtain fast access to specific small RNA sequence information. BLAST search analysis within SiMiSnoRNA enables users to compare their own query sequence data with SiMiSnoRNA database to retrieve related information. To facilitate data consistency, publicly available information from NCBI has been integratedinto database that can be conveniently used for research on the experimental and molecular biology. Database URL: http://smsrna.chem.pg.gda.pl
Citations
-
1
CrossRef
-
0
Web of Science
-
1
Scopus
Authors (4)
Cite as
Full text
- Publication version
- Accepted or Published Version
- DOI:
- Digital Object Identifier (open in new tab) 10.1515/tjb-2015-0044
- License
-
open in new tab
Keywords
Details
- Category:
- Articles
- Type:
- artykuł w czasopiśmie wyróżnionym w JCR
- Published in:
-
Turkish Journal of Biochemistry-Turk Biyokimya Dergisi
no. 40,
edition 6,
pages 524 - 532,
ISSN: 0250-4685 - Language:
- English
- Publication year:
- 2015
- Bibliographic description:
- Kalathiya U., Padariya M., Bagiński M., Padariya C.: SiMiSnoRNA: Collection of siRNA, miRNA, and snoRNA database for RNA Interference// Turkish Journal of Biochemistry-Turk Biyokimya Dergisi. -Vol. 40, iss. 6 (2015), s.524-532
- DOI:
- Digital Object Identifier (open in new tab) 10.1515/tjb-2015-0044
- Verified by:
- Gdańsk University of Technology
seen 197 times
Recommended for you
A Data Driven Model for Predicting RNA-Protein Interactions based on Gradient Boosting Machine
- D. S. Jain,
- S. R. Gupte,
- R. Aduri
DATABASE AND BIGDATA PROCESSING SYSTEM FOR ANALYSIS OF AIS MESSAGES IN THE NETBALTIC RESEARCH PROJECT
- M. Lewczuk,
- P. Cichocki,
- J. Woźniak
Pathogenesis of psoriasis in the “omic” era. Part II. Genetic, genomic and epigenetic changes in psoriasis
- B. Nedoszytko,
- A. Szczerkowska-Dobosz,
- M. Stawczyk-Macieja
- + 22 authors