Search results for: computer phylogenetics

• MOLECULAR PHYLOGENETICS AND EVOLUTION

  Journals

  ISSN: 1055-7903 , eISSN: 1095-9513

• LECTURE NOTES IN COMPUTER SCIENCE

  Journals

  ISSN: 0302-9743

• Procedia Computer Science

  Journals

  ISSN: 1877-0509

• THEORETICAL COMPUTER SCIENCE

  Journals

  ISSN: 0304-3975 , eISSN: 1879-2294

• Construction of phylogenetic trees with topological constraints

  Publication

  • T. Tretkowski

  - Zeszyty Naukowe Wydziału ETI Politechniki Gdańskiej. Technologie Informacyjne - Year 2011

  This paper proposes a method of reconstruction of phylogenetic trees based on heuristic search with topological constraints. Using topological constraints it is possible to reduce the set of solutions as well as to enforce that the result is consistent with a given hypothesis about the evolution process within some group of species. Along with this work a number of algorithms used for phylogenetic analysis were implemented. Those...

• Properties of the triset metric for phylogenetic trees

  Publication

  • P. Noga

  - Year 2012

  the following paper presents a new polynomial time metric for unrootedphylogenetic trees (based on weighted bipartite graphs and the method ofdetermining a minimum perfect matching) and its properties. also many its properties are presented.

  Full text to download in external service

• Communications in Computer and Information Science

  Journals

  ISSN: 1865-0929

• Phylogenetic Placement and Taxonomy of the Genus Hederorkis (Orchidaceae)

  Publication

  • J. Mytnik-Ejsmont
  • D. Szlachetko
  • P. Baranow
  • K. Jolliffe
  • M. Górniak
  • J. Mytnik

  - PLOS ONE - Year 2015

  Full text to download in external service

• Analyzing sets of phylogenetic trees using metrics

  Publication

  • D. Bogdanowicz

  - Applicationes Mathematicae - Year 2011

  The reconstruction of evolutionary trees is one of the primary objectives in phylogenetics. Such a tree represents historical evolutionary relationships between different species or organisms. Tree comparisons are used for multiple purposes, from unveiling the history of species to deciphering evolutionary associations among organisms and geographical areas. In this paper, we describe a general method for comparing phylogenetictrees...

  Full text available to download

• On a matching distance between rooted phylogenetic trees

  Publication

  • D. Bogdanowicz
  • K. Giaro

  - International Journal of Applied Mathematics and Computer Science - Year 2013

  The Robinson–Foulds (RF) distance is the most popular method of evaluating the dissimilarity between phylogenetic trees. In this paper, we define and explore in detail properties of the Matching Cluster (MC) distance, which can be regarded as a refinement of the RF metric for rooted trees. Similarly to RF, MC operates on clusters of compared trees, but the distance evaluation is more complex. Using the graph theoretic approach...

  Full text available to download