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Zespół Katedry Równań Różniczkowych i Zastosowań Matematyki
Research Potential* topologiczne niezmienniki w teorii układów dynamicznych i ich zastosowania * teoria punktów stałych i periodycznych * metody matematyczne w kardiologii * miary złożoności i ich zastosowania * modele strukturalne z dyfuzją i warunkami brzegowymi Fellera * modelowanie ekspresji genu białka Hes1 * równania McKendrick-von Foerster z warunkiem odnowy * modelowanie termicznej ablacji za pomocą równania bio-przewodnictwa ciepła * soczewkowanie...
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Katedra chemii, technologii i biotechnologii żywności
Research Potential* Biochemiczne i funkcjonalne właściwości składników żywności oraz ich chemiczne i enzymatyczne modyfikacje * Łagodne przetwarzanie żywności * Bezpieczeństwo zdrowotne żywności * Analiza żywności * Reologia żywności * Związki aktywne biologicznie pochodzenia roślinnego
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Zespół Systemów Multimedialnych
Research Potential* technologie archiwizacji, rekonstrukcji i dostępu do nagrań archiwalnych * technologie inteligentnego monitoringu wizyjnego i akustycznego * multimedialne technologie telemedyczne * multimodalne interfejsy komputerowe
Other results Pokaż wszystkie wyniki (50)
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DNAffinity: a machine-learning approach to predict DNA binding affinities of transcription factors
PublicationWe present a physics-based machine learning approach to predict in vitro transcription factor binding affinities from structural and mechanical DNA properties directly derived from atomistic molecular dynamics simulations. The method is able to predict affinities obtained with techniques as different as uPBM, gcPBM and HT-SELEX with an excellent performance, much better than existing algorithms. Due to its nature, the method can...
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Multiple transcriptional factors regulate transcription of the rpoE gene in Escherichia coli under different growth conditions and when the lipopolysaccharide biosynthesis is defective.
PublicationThe RpoE sigma factor is essential for the viability of Escherichia coli. RpoE regulates extracytoplasmic functions including lipopolysaccharide (LPS) translocation and some of its non-stoichiometric modifications. Transcription of the rpoE gene is positively autoregulated by EσE and by unknown mechanisms that control the expression of its distally located promoter(s). Mapping of 5′ ends of rpoE mRNA identified five new transcriptional...
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How acidic amino acid residues facilitate DNA target site selection
PublicationDespite the negative charge of the DNA backbone, acidic residues (Asp/Glu) commonly participate in the base readout, with a strong preference for cytosine. In fact, in the solved DNA/protein structures, cytosine is recognized almost exclusively by Asp/Glu through a direct hydrogen bond, while at the same time, adenine, regardless of its amino group, shows no propensity for Asp/Glu. Here, we analyzed the contribution of Asp/Glu...
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Interaction of the conserved region 4.2 of sigma(E) with the RseA anti-sigma factor
PublicationEo-E RNA polymerase transcribes a regulon of folding factors for the bacterial envelope and is induced by physical and chemical stresses. The RseA anti-sigma factor inhibits the activity of Esigma(E) RNA, polymerase. It is shown here that the N-terminal portion of sigma(E), residues 1-153, binds core RNA polymerase. RseA interacts with residues 154-191 of sigma(E), a site that is homologous to region 4, the sigma factor binding...
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Regulated assembly of lipopolysaccharide and sensing of its alterations in Escherichia coli
PublicationThis thesis describes mechanism of the regulation of the transcription of the rpoE gene encoding an essential RNA polymerase subunit in Escherichia coli. The RpoE regulates extracytoplasmic stress response regulon and is required to initiate transcription of genes, whose products are involvedin the folding of periplasmic proteins and synthesis and transport of outer membrane components. The transcriptional regulation of the rpoE...