Search results for: PROTEIN EMBEDDING

• Silica In Silico: A Molecular Dynamics Characterization of the Early Stages of Protein Embedding for Atom Probe Tomography

  Publication

  • G. Novi Inverardi
  • F. Carnovale
  • L. Petrolli
  • S. Taioli
  • G. Lattanzi

  - BIOPHYSICAL JOURNAL - Year 2023

  A novel procedure for the application of atom probe tomography (APT) to the structural analysis of biological systems, has been recently proposed, whereby the specimen is embedded by a silica matrix and ablated by a pulsed laser source. Such a technique, requires that the silica primer be properly inert and bio-compatible, keeping the native structural features of the system at hand, while condensing into an amorphous, glass-like...

  Full text available to download

• PROTEIN EXPRESSION AND PURIFICATION

  Journals

  ISSN: 1046-5928 , eISSN: 1096-0279

• Towards semantic-rich word embeddings

  Publication

  • G. Beringer
  • M. Jabłoński
  • P. Januszewski
  • A. Sobecki
  • J. Szymański

  - Annals of Computer Science and Information Systems - Year 2019

  In recent years, word embeddings have been shown to improve the performance in NLP tasks such as syntactic parsing or sentiment analysis. While useful, they are problematic in representing ambiguous words with multiple meanings, since they keep a single representation for each word in the vocabulary. Constructing separate embeddings for meanings of ambiguous words could be useful for solving the Word Sense Disambiguation (WSD)...

  Full text available to download

• Function and Frustration of Multi-Drug ABC Exporter Protein and Design of Model Proteins for Drug Delivery Using Protein Hydration Thermodynamics

  Publication

  • D. Urry
  • K. Urry
  • W. Szaflarski
  • M. Nowicki
  • M. Zabel

  - CURRENT PHARMACEUTICAL DESIGN - Year 2009

  Full text to download in external service

• Elastic-contractile model proteins: Physical chemistry, protein function and drug design and delivery

  Publication

  • D. Urry
  • K. Urry
  • W. Szaflarski
  • M. Nowicki

  - ADVANCED DRUG DELIVERY REVIEWS - Year 2010

  Full text to download in external service

• Protein & Cell

  Journals

  ISSN: 1674-800X , eISSN: 1674-8018

• PROTEIN JOURNAL

  Journals

  ISSN: 1572-3887 , eISSN: 1573-4943

• Graph Vertex Embeddings: Distance, Regularization and Community Detection

  Publication

  • R. Nowak
  • A. Małkowski
  • D. Cieślak
  • P. Sokół
  • P. Wawrzyński

  - Year 2024

  Full text to download in external service

• How proteins bind to DNA: target discrimination and dynamic sequence search by the telomeric protein TRF1

  Publication

  • M. Wieczór
  • J. Czub

  - NUCLEIC ACIDS RESEARCH - Year 2017

  Target search as performed by DNA-binding proteins is a complex process, in which multiple factors contribute to both thermodynamic discrimination of the target sequence from overwhelmingly abundant off-target sites and kinetic acceleration of dynamic sequence interrogation. TRF1, the protein that binds to telomeric tandem repeats, faces an intriguing variant of the search problem where target sites are clustered within short fragments...

  Full text available to download

• Dirichlet-to-Neumann and Neumann-to-Dirichlet embedding methods for bound states of the Dirac equation

  Publication

  • S. Bielski
  • R. Szmytkowski

  - JOURNAL OF PHYSICS A-MATHEMATICAL AND GENERAL - Year 2006

  Zaprezentowano uogólnienie formalizmu operatorów Dirichleta-Neumanna (DtN) i Neumanna-Dirichleta (NtD) na przypadek równania Diraca. Przedstawiono zastosowanie tego formalizmu do znajdowania poziomów energetycznych cząstki Diraca związanej w potencjale.