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Year 2025
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Implementation of Time-Averaged Restraints with UNRES Coarse-Grained Model of Polypeptide Chains
PublicationTime-averaged restraints from nuclear magnetic resonance (NMR) measurements have been implemented in the UNRES coarse-grained model of polypeptide chains in order to develop a tool for data-assisted modeling of the conformational ensembles of multistate proteins, intrinsically disordered proteins (IDPs) and proteins with intrinsically disordered regions (IDRs), many of which are essential in cell biology. A numerically stable variant...
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Secondary Structure in Free and Assisted Modeling of Proteins with the Coarse-Grained UNRES Force Field
PublicationSecondary structure is a solid scaffold on which the three-dimensional structure of a protein is built. Therefore, care must be taken to reproduce the secondary structure as accurately as possible in the simulations of protein systems. In this chapter, we summarize the physics-based energy terms that govern secondary-structure formation, the auxiliary restraints on secondary structure derived from bioinformatics and from the experimental...
Year 2024
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Actual and reference evapotranspiration for a natural, temperate zone fen wetland – Upper Biebrza case study
PublicationEvapotranspiration is the key and predominant component of the water balance in wetlands. Direct evapotranspiration measurements are challenging in wetlands due to their remoteness and high surface water level. This article describes the actual (ETa and reference evapotranspiration (ET0) from a cultivated wet meadow located in the Biebrza National Park – the largest national park in north-east Poland, Central Europe. The data were...
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An automated learning model for twitter sentiment analysis using Ranger AdaBelief optimizer based Bidirectional Long Short Term Memory
PublicationSentiment analysis is an automated approach which is utilized in process of analysing textual data to describe public opinion. The sentiment analysis has major role in creating impact in the day-to-day life of individuals. However, a precise interpretation of text still relies as a major concern in classifying sentiment. So, this research introduced Bidirectional Long Short Term Memory with Ranger AdaBelief Optimizer (Bi-LSTM RAO)...
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An optimized system for sensor ontology meta-matching using swarm intelligent algorithm
PublicationIt is beneficial to annotate sensor data with distinct sensor ontologies in order to facilitate interoperability among different sensor systems. However, for this interoperability to be possible, comparable sensor ontologies are required since it is essential to make meaningful links between relevant sensor data. Swarm Intelligent Algorithms (SIAs), namely the Beetle Swarm Optimisation Algorithm (BSO), present a possible answer...
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Application of the Flipped Learning Methodology at a Business Process Modelling Course – A Case Study
PublicationFlipped learning has been known for a long time, but its modern use dates back to 2012, with the publication of Bergmann and Saams. In the last decade, it has become an increasingly popular learning method. Every year, the number of publications on implementing flipped learning experiments is growing, just as the amount of research on the effectiveness of this educational method. The aim of the article is to analyze the possibilities...
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Automated hearing loss type classification based on pure tone audiometry data
PublicationHearing problems are commonly diagnosed with the use of tonal audiometry, which measures a patient’s hearing threshold in both air and bone conduction at various frequencies. Results of audiometry tests, usually represented graphically in the form of an audiogram, need to be interpreted by a professional audiologist in order to determine the exact type of hearing loss and administer proper treatment. However, the small number of...
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Bi-GRU-APSO: Bi-Directional Gated Recurrent Unit with Adaptive Particle Swarm Optimization Algorithm for Sales Forecasting in Multi-Channel Retail
PublicationIn the present scenario, retail sales forecasting has a great significance in E-commerce companies. The precise retail sales forecasting enhances the business decision making, storage management, and product sales. Inaccurate retail sales forecasting can decrease customer satisfaction, inventory shortages, product backlog, and unsatisfied customer demands. In order to obtain a better retail sales forecasting, deep learning models...
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Classification of Covid-19 using Differential Evolution Chaotic Whale Optimization based Convolutional Neural Network
PublicationCOVID-19, also known as the Coronavirus disease-2019, is an transferrable disease that spreads rapidly, affecting countless individuals and leading to fatalities in this worldwide pandemic. The precise and swift detection of COVID-19 plays a crucial role in managing the pandemic's dissemination. Additionally, it is necessary to recognize COVID-19 quickly and accurately by investigating chest x-ray images. This paper proposed a...
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Classification of Glacial and Fluvioglacial Landforms by Convolutional Neural Networks Using a Digital Elevation Model
PublicationThe rise of artificial neural networks (ANNs) has revolutionized various fields of research, demonstrating their effectiveness in solving complex problems. However, there are still unexplored areas where the application of neural networks, particularly convolutional neural network (CNN) models, has yet to be explored. One area is where the application of ANNs is even expected is geomorphology. One of the tasks of geomorphology...
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CNN-CLFFA: Support Mobile Edge Computing in Transportation Cyber Physical System
PublicationIn the present scenario, the transportation Cyber Physical System (CPS) improves the reliability and efficiency of the transportation systems by enhancing the interactions between the physical and cyber systems. With the provision of better storage ability and enhanced computing, cloud computing extends transportation CPS in Mobile Edge Computing (MEC). By inspecting the existing literatures, the cloud computing cannot fulfill...
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Comparison of 3D Point Cloud Completion Networks for High Altitude Lidar Scans of Buildings
PublicationHigh altitude lidar scans allow for rapid acquisition of big spatial data representing entire city blocks. Unfortunately, the raw point clouds acquired by this method are largely incomplete due to object occlusions and restrictions in scanning angles and sensor resolution, which can negatively affect the obtained results. In recent years, many new solutions for 3D point cloud completion have been created and tested on various objects;...
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Comparison of Deep Learning Approaches in Classification of Glacial Landforms
PublicationGlacial landforms, created by the continuous movements of glaciers over millennia, are crucial topics in geomorphological research. Their systematic analysis affords invaluable insights into past climatic oscillations and augments understanding of long-term climate change dynamics. The classification of these types of terrain traditionally depends on labor-intensive manual or semi-automated methods. However, the emergence of automated...
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Comparison of Deep Neural Network Learning Algorithms for Mars Terrain Image Segmentation
PublicationThis paper is dedicated to the topic of terrain recognition on Mars using advanced techniques based on the convolutional neural networks (CNN). The work on the project was conducted based on the set of 18K images collected by the Curiosity, Opportunity and Spirit rovers. The data were later processed by the model operating in a Python environment, utilizing Keras and Tensorflow repositories. The model benefits from the pretrained...
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Detecting Objects of Various Categories in Optical Remote Sensing Imagery Using Neural Networks
PublicationThe effective detection of objects in remote sensing images is of great research importance, so recent years have seen a significant progress in deep learning techniques in this field. However, despite much valuable research being conducted, many challenges still remain. A lot of research projects focus on detecting objects of a single category (class), while correctly detecting objects of different categories is much harder. The...
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Detection of Alzheimer's disease using Otsu thresholding with tunicate swarm algorithm and deep belief network
PublicationIntroduction: Alzheimer’s Disease (AD) is a degenerative brain disorder characterized by cognitive and memory dysfunctions. The early detection of AD is necessary to reduce the mortality rate through slowing down its progression. The prevention and detection of AD is the emerging research topic for many researchers. The structural Magnetic Resonance Imaging (sMRI) is an extensively used imaging technique in detection of AD, because...
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Efficiency of Artificial Intelligence Methods for Hearing Loss Type Classification: an Evaluation
PublicationThe evaluation of hearing loss is primarily conducted by pure tone audiometry testing, which is often regarded as golden standard for assessing auditory function. If the presence of hearing loss is determined, it is possible to differentiate between three types of hearing loss: sensorineural, conductive, and mixed. This study presents a comprehensive comparison of a variety of AI classification models, performed on 4007 pure tone...
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Engineering and Management of Space Systems
PublicationDynamic development of the European space sector results in a necessity for suitable Higher Education Institution graduates. Current study programs of Aerospace Technology are focused on the field of mechanical engineering. Although engineering methods for design, construction and assembly of mechanical systems are covered, interdisciplinarity and life cycle aspects are not considered in a sufficient degree. Due to the increasing...
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Engineering and Management of Space Systems - an International Joint Master's Double-Degree Programme
PublicationDynamic development of the European space sector results in a necessity for suitable Higher Education Institution graduates. Current study programs of Aerospace Technology are focused on the field of mechanical engineering. Although engineering methods for design, construction and assembly of mechanical systems are covered, interdisciplinarity and life cycle aspects are not considered in a sufficient degree. Due to the increasing...
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Enhancing Business Process Management Through Nature Assessment: Development and Deployment of the Business Process Nature Assessment Tool
PublicationIn contemporary business landscapes, the diverse nature of processes necessitates a thor-ough assessment before implementing Business Process Management (BPM). However, conducting such assessments can be arduous, particularly for small and medium-sized en-terprises. This study aims to address this challenge by developing and showcasing the utility of an online tool based on the Business Process Nature Assessment Framework (BPNAF)....
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Floodsar: Automatic mapping of river flooding extent from multitemporal SAR imagery
PublicationFloodsar is an open-source tool for automatic mapping of the flood extent from a time series of synthetic aperture radar (SAR) imagery. Floodsar is unsupervised, however, it requires defining the parameters search space, geographical area of interest, and some river gauge observations (e.g. water levels or discharges) time series that overlap temporarily with the SAR imagery. Applications of Floodsar are mainly in real-time monitoring...
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Glacial Landform Classification with Vision Transformer and Digital Elevation Model
PublicationClassification of glacial landforms is a task in geomorphology that has not been widely explored with deep neural network methods. This study uses Vision Transformer (ViT) architecture to classify glacial landforms using Digital Elevation Model (DEM) in three study sites: Elise Glacier in Svalbard, Norway; Gardno-Leba Plain and Lubawa Upland in Poland. In datasets each of those sites has different DEM resolutions and terrain types...
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Integration of electric vehicle into smart grid: a meta heuristic algorithm for energy management between V2G and G2V
PublicationRecently, Electric Vehicles (EV) have been providing fast response and substantial progress in the power generation model. Further, EVs are exploited as adaptable Energy Storage Systems (ESSs) and show a promising performance in ancillary service markets to increase the demand of Smart Grid (SG) integration. The expansion of Vehicle-to-Grid concept has created an extra power source when renewable energy sources are not available....
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Measuring Tilt with an IMU Using the Taylor Algorithm
PublicationThis article addresses the important problem of tilt measurement and stabilization. This is particularly important in the case of drone stabilization and navigation in underwater environments, multibeam sonar mapping, aerial photogrammetry in densely urbanized areas, etc. The tilt measurement process involves the fusion of information from at least two different sensors. Inertial sensors (IMUs) are unique in this context because...
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Melanoma skin cancer detection using mask-RCNN with modified GRU model
PublicationIntroduction: Melanoma Skin Cancer (MSC) is a type of cancer in the human body; therefore, early disease diagnosis is essential for reducing the mortality rate. However, dermoscopic image analysis poses challenges due to factors such as color illumination, light reflections, and the varying sizes and shapes of lesions. To overcome these challenges, an automated framework is proposed in this manuscript. Methods: Initially, dermoscopic...
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MEMS Modeling in the Context of Inertial Navigation
PublicationUnderwater navigation is a research topic current undertaken in many areas of underwater research. The article presents an analysis resulting from MEMS modelling in the context of inertial navigation. The ideal approach was confronted with its limitations, but a non-linear approach, close to the real one, was also presented. Both models were compared in the context of inertial navigation. Random disturbances and their impact on linear...
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Multi-GPU-powered UNRES package for physics-based coarse-grained simulations of structure, dynamics, and thermodynamics of protein systems at biological size- and timescales
PublicationCoarse-grained models are nowadays extensively used in biomolecular simulations owing to the tremendous extension of size- and time-scale of simulations. The physics-based UNRES (UNited RESidue) model of proteins developed in our laboratory has only two interaction sites per amino-acid residue (united peptide groups and united side chains) and implicit solvent. However, owing to rigorous physics-based derivation, which enabled...
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Nauka w świecie cyfrowym okiem młodego inżyniera - mobilne aplikacje cross-platformowe
PublicationIstotnym punktem w analizie technologii mobilnych jest poznanie opinii osób z nimi zaznajomionych. W niniejszym artykule przedstawione zostaną wyniki badań dotyczących porównania technologii cross-platformowych (uniwersalnych) i natywnych (dedykowanych), w których uwzględniono opinie i doświadczenia deweloperów pracujących w obszarze technologii mobilnych. Badanie miało na celu zrozumienie preferencji, wyzwań i korzyści związanych...
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Nauka w świecie cyfrowym okiem młodego inżyniera - nawigacja mobilna w miastach
PublicationDynamiczny rozwój technologii ICT i miniaturyzacja komponentów elektronicznych doprowadziły do sytuacji, w której znaczna część światowego społeczeństwa korzysta z urządzeń mobilnych. Dzięki powszechnemu dostępowi do smartfonów każdy użytkownik może w prosty sposób sprawdzić swoje położenie, niezależnie od tego, gdzie w danej chwili się znajduje. Ponadto sami operatorzy sieci komórkowych oraz dostawcy szeregu serwisów korzystają...
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Nauka w świecie cyfrowym okiem młodego inżyniera – trendy w aplikacjach mobilnych
PublicationAplikacje mobilne zyskały ogromną popularność wraz z postępem technologicznym i rozwojem telefonów komórkowych, które w dzisiejszych czasach nie są już wykorzystywane tylko do komunikacji za pomocą połączeń głosowych czy wiadomości SMS. Za pomocą smartfonów możemy dokonywać zakupów w Internecie, przeglądać sieci społecznościowe, wykonywać operacje bankowe. Ciągły rozwój tej dziedziny technologii daje szereg możliwości deweloperom...
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OOA-modified Bi-LSTM network: An effective intrusion detection framework for IoT systems
PublicationCurrently, the Internet of Things (IoT) generates a huge amount of traffic data in communication and information technology. The diversification and integration of IoT applications and terminals make IoT vulnerable to intrusion attacks. Therefore, it is necessary to develop an efficient Intrusion Detection System (IDS) that guarantees the reliability, integrity, and security of IoT systems. The detection of intrusion is considered...
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Review of Segmentation Methods for Coastline Detection in SAR Images
PublicationSynthetic aperture radar (SAR) images acquired by airborne sensors or remote sensing satellites contain the necessary information that can be used to investigate various objects of interest on the surface of the Earth, including coastlines. The coastal zone is of great economic importance and is also very densely populated. The intensive and increasing use of coasts and changes of coastlines motivate researchers to try to assess...
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Subjective quality evaluation of 8- and 10-bit MP4-coded video sequences from Netflix
PublicationRecently, many researchers have been intensively conducting quality of service (QoS), quality of experience (QoE), and user experience (UX) studies in the field of video analysis. This paper is intended to make a new, complementary contribution to this field. Currently, streaming platforms are key products in relation to delivering video content online. Most often, they include the MP4 video format, which is most widely utilized...
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The Application of a Mobile Unmanned Device for Monitoring Water and Sediment Pollution in the Port of Gdynia
PublicationPollution in the Port of Gdynia can encompass various types of substances and contaminants that affect the quality of water and sediment in this region. Ships entering and leaving the port can release pollutants such as oil, fuel, waste, and chemicals into the water. Controlling and monitoring these pollutants is a crucial part of environmental stewardship. In recent years, uncrewed units have been increasingly in use for in situ...
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The Fuzzy Analysis of Western Windfarm Transportation Safety
PublicationThe previously completed route planning research of Navigational Transportation Safety in the Taiwan Western wind farm analyzed delves into the expansion of sustainable wind energy and navigation safety together along the Taiwan Western for confronting the challenge of balancing resource coexistence and displacement. Previous studies primarily focused on route planning and vessel traffic density which developed the necessary comprehensive...
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UAV-Based Hyperspectral Ultraviolet-Visible Interpolated Reflectance Images for Remote Sensing of Leaf Area Index
PublicationDespite its relation to a number of environmental parameters, ultraviolet (UV) reflectance is rarely used in remote sensing. In this study, we investigate the applicability of UV-vis reflectance for vegetation monitoring with unmanned aerial vehicles (UAV). We measure point reflectance over the study area using a UAV-borne spectrometer, project the points onto the Earth's surface, and interpolate them to obtain continuous reflectance...
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User experience evaluation study on the quality of 1K, 2K, and 4K H.265/HEVC video content
PublicationNowadays, most content creators focus on distributing rich media at the highest possible resolution. Currently, the majority of sold consoles, media players, computer hardware, as well as displays and TVs are advertised as 4K-compatible. The same trend is observed in the case of popular online streaming services and terrestrial TV broadcasts. Generally speaking, it is assumed that higher bitrates provide higher subjective judgements....
Year 2023
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A Web-GIS tool for diagnosing spatial orientation of young adults: design and evaluation of Geo-Survey
PublicationSpatial orientation is the effectiveness with which one is able to assess the mutual location of objects relative to a point of reference or a system of coordinates. Traditionally, this ability has been evaluated through field navigation tests, which do not take into account the prevailing influence of free online maps and virtual walks on a person’s interpretation of space. In this context, this study presents a Web-GIS tool designed...
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Audio Content and Crowdsourcing: A Subjective Quality Evaluation of Radio Programs Streamed Online
PublicationRadio broadcasting has been present in our lives for over 100 years. The transmission of speech and music signals accompanies us from an early age. Broadcasts provide the latest information from home and abroad. They also shape musical tastes and allow many artists to share their creativity. Modern distribution involves transmission over a number of terrestrial systems. The most popular are analog FM (Frequency Modulation) and...
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Balanced Spider Monkey Optimization with Bi-LSTM for Sustainable Air Quality Prediction
PublicationA reliable air quality prediction model is required for pollution control, human health monitoring, and sustainability. The existing air quality prediction models lack efficiency due to overfitting in prediction model and local optima trap in feature selection. This study proposes the Balanced Spider Monkey Optimization (BSMO) technique for effective feature selection to overcome the local optima trap and overfitting problems....
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Comparing Apples and Oranges: A Mobile User Experience Study of iOS and Android Consumer Devices
PublicationWith the rapid development of wireless networks and the spread of broadband access around the world, the number of active mobile user devices continues to grow. Each year more and more terminals are released on the market, with the smartphone being the most popular among them. They include low-end, mid-range, and of course high-end devices, with top hardware specifications. They do vary in build quality, utilized type of material,...
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Detecting type of hearing loss with different AI classification methods: a performance review
PublicationHearing is one of the most crucial senses for all humans. It allows people to hear and connect with the environment, the people they can meet and the knowledge they need to live their lives to the fullest. Hearing loss can have a detrimental impact on a person's quality of life in a variety of ways, ranging from fewer educational and job opportunities due to impaired communication to social withdrawal in severe situations. Early...
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Effective Air Quality Prediction Using Reinforced Swarm Optimization and Bi-Directional Gated Recurrent Unit
PublicationIn the present scenario, air quality prediction (AQP) is a complex task due to high variability, volatility, and dynamic nature in space and time of particulates and pollutants. Recently, several nations have had poor air quality due to the high emission of particulate matter (PM2.5) that affects human health conditions, especially in urban areas. In this research, a new optimization-based regression model was implemented for effective...
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HCI-Based Wireless System for Measuring the Concentration of Mining Machinery and Equipment Operators
PublicationMaintaining stable and reliable working conditions is a matter of vital importance for various companies, especially those involving heavy machinery. Due to human exhaustion, as well as unpredicted hazards and dangerous situations, the personnel has to take actions and wisely plan each move. This paper presents a human–computer interaction (HCI)-based system that uses a concentration level measurement function to increase the safety...
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Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment
PublicationWe present the results for CAPRI Round 54, the 5th joint CASP-CAPRI protein assembly prediction challenge. The Round offered 37 targets, including 14 homodimers, 3 homo-trimers, 13 heterodimers including 3 antibody–antigen complexes, and 7 large assemblies. On average 70 CASP and CAPRI predictor groups, including more than 20 automatics servers, submitted models for each target. A total of 21 941 models submitted by these groups...
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Impact of Climate Change on Water Sources and River‐Floodplain Mixing in the Natural Wetland Floodplain of Biebrza River
PublicationThe origins of river and floodplain waters (groundwater, rainfall, and snowmelt) and their extent during overbank flow events strongly impact ecological processes such as denitrification and vegetation development. However, the long-term sensitivity of floodplain water signatures to climate change remains elusive. We examined how the integrated hydrological model HydroGeoSphere and the Hydraulic Mixing-Cell method could help us...
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Intracranial hemorrhage detection in 3D computed tomography images using a bi-directional long short-term memory network-based modified genetic algorithm
PublicationIntroduction: Intracranial hemorrhage detection in 3D Computed Tomography (CT) brain images has gained more attention in the research community. The major issue to deal with the 3D CT brain images is scarce and hard to obtain the labelled data with better recognition results. Methods: To overcome the aforementioned problem, a new model has been implemented in this research manuscript. After acquiring the images from the Radiological...
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Is it possible to create a unified urban greenery management system (UGMS) on a national scale? The concept for EU Member State of Poland
PublicationMotives: Currently developed urban greenery management systems (UGMS) are limited in scope and profiled towards solving particular issues. Moreover, due to the lack of common standards and solutions, UGMS implementation requires considerable financial effort, which is only feasible for wealthy urban centres. There is a need for universal, cost-effective technological solutions which could constitute a common urban green infrastructure...
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Leaf wettability and plant surface water storage for common wetland species of the Biebrza peatlands (northeast Poland)
PublicationWetlands play a crucial role in buffering the effects of climate change. At the same time, they are one of the most endangered ecosystems on the globe. The knowledge of the water cycle and energy exchange is crucial for the practical preservation and exploiting their capabilities. Leaf wettability is an important parameter characterising the plant's ability to retain water on its surface, and is linked to the ecosystems' hydrological...
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Mobile Networks' Analysis in Terms of QoS Performance Assessment
PublicationQuality of service (QoS) assessment is one of the basic processes carried out by mobile network operators (MNOs) and regulators of the telecommunications market. Usually, professional companies carry out measurements for various country areas and use cases (scenarios). In this paper, we show exemplary measurement results carried out in drive tests in the vicinity of the Polish capital by a professional company. The measurement...