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dr inż. Anna Jezierska
Employment
- Adiunkt at Department of Biomedical Engineering
Keywords Help
- background-level data augmentation
- computer-aided sperm analysis
- computer-aided sperm analysis microscopic images full sperm segmentation ensembling inter-rater agreement noisy labels
- confocal microscopy
- correlation
- deblurring, denoising, multi-task learning, video enhancement
- dental interventions
- detection
- dictionaries
- eeg micro events
Publications
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total: 12
Catalog Publications
Year 2024
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Learning sperm cells part segmentation with class-specific data augmentation
PublicationInfertility affects around 15% of couples worldwide. Male fertility problems include poor sperm quality and low sperm count. The advanced fertility treatment methods like ICSI are nowadays supported by vision systems to assist embryologists in selecting good quality sperm. Computer-Assisted Semen Analysis (CASA) provides quantitative and qualitative sperm analysis concerning concentration, motility, morphology, vitality, and fragmentation....
Year 2023
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Ensembling noisy segmentation masks of blurred sperm images
PublicationBackground: Sperm tail morphology and motility have been demonstrated to be important factors in determining sperm quality for in vitro fertilization. However, many existing computer-aided sperm analysis systems leave the sperm tail out of the analysis, as detecting a few tail pixels is challenging. Moreover, some publicly available datasets for classifying morphological defects contain images limited only to the sperm head. This...
Year 2022
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BP-EVD: Forward Block-Output Propagation for Efficient Video Denoising
PublicationDenoising videos in real-time is critical in many applications, including robotics and medicine, where varying light conditions, miniaturized sensors, and optics can substantially compromise image quality. This work proposes the first video denoising method based on a deep neural network that achieves state-of-the-art performance on dynamic scenes while running in real-time on VGA video resolution with no frame latency. The backbone...
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Multi-task Video Enhancement for Dental Interventions
PublicationA microcamera firmly attached to a dental handpiece allows dentists to continuously monitor the progress of conservative dental procedures. Video enhancement in video-assisted dental interventions alleviates low-light, noise, blur, and camera handshakes that collectively degrade visual comfort. To this end, we introduce a novel deep network for multi-task video enhancement that enables macro-visualization of dental scenes. In particular,...
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Sperm segmentation and abnormalities detection during the ICSI procedure using machine learning algorithms
Publication(1) About 15-20% of couples struggle with the problem of infertility. 30 to 40% of these cases are caused by abnormalities in the structure and motility of sperm. Sometimes the only possibility for such people is to use the procedure of artificial insemination. CASA systems are used to increase the efficiency of this procedure by selecting the appropriate sperm cell. (2) This paper presents an approach to the sperm classification...
Year 2021
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Concurrent Video Denoising and Deblurring for Dynamic Scenes
PublicationDynamic scene video deblurring is a challenging task due to the spatially variant blur inflicted by independently moving objects and camera shakes. Recent deep learning works bypass the ill-posedness of explicitly deriving the blur kernel by learning pixel-to-pixel mappings, which is commonly enhanced by larger region awareness. This is a difficult yet simplified scenario because noise is neglected when it is omnipresent in a wide...
Year 2020
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Global Optimization for Recovery of Clipped Signals Corrupted With Poisson-Gaussian Noise
PublicationWe study a variational formulation for reconstructing nonlinearly distorted signals corrupted with a Poisson-Gaussian noise. In this situation, the data fidelity term consists of a sum of a weighted least squares term and a logarithmic one. Both of them are precomposed by a nonlinearity, modelling a clipping effect, which is assumed to be rational. A regularization term, being a piecewise rational approximation of the ℓ0 function...
Year 2019
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Labeler-hot Detection of EEG Epileptic Transients
PublicationPreventing early progression of epilepsy and sothe severity of seizures requires effective diagnosis. Epileptictransients indicate the ability to develop seizures but humansoverlook such brief events in an electroencephalogram (EEG)what compromises patient treatment. Traditionally, trainingof the EEG event detection algorithms has relied on groundtruth labels, obtained from the consensus...
Year 2018
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Instrument detection and pose estimation with rigid part mixtures model in video-assisted surgeries
PublicationLocalizing instrument parts in video-assisted surgeries is an attractive and open computer vision problem. A working algorithm would immediately find applications in computer-aided interventions in the operating theater. Knowing the location of tool parts could help virtually augment visual faculty of surgeons, assess skills of novice surgeons, and increase autonomy of surgical robots. A surgical tool varies in appearance due to...
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Proximal primal–dual best approximation algorithm with memory
PublicationWe propose a new modified primal–dual proximal best approximation method for solving convex not necessarily differentiable optimization problems. The novelty of the method relies on introducing memory by taking into account iterates computed in previous steps in the formulas defining current iterate. To this end we consider projections onto intersections of halfspaces generated on the basis of the current as well as the previous...
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Spatially variant PSF modeling in confocal macroscopy
PublicationThe point spread function (PSF) of imaging systems plays an essential role in image reconstruction. In the context of confocal microscopy, optical performance degrades towards the edge of the field of view. In confocal macroscopy, the related artifacts are even stronger, as the field of view is much larger. Because the related PSFs are strongly spatially variant, it is essential to be able to model them with few parameters. The...
Year 2017
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Surgical tool tracking by on-line selection of structural correlation filters
PublicationIn visual tracking of surgical instruments, correlation filtering finds the best candidate with maximal correlation peak. However, most trackers only consider capturing target appearance but not target structure. In this paper we propose surgical instrument tracking approach that integrates prior knowledge related to rotation of both shaft and tool tips. To this end, we employ rigid parts mixtures model of an instrument. The rigidly...
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