Publikacje
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wszystkich: 500
Katalog Publikacji
Rok 2015
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Structural and dynamic changes adopted by EmrE, multidrug transporter protein—Studies by molecular dynamics simulation
PublikacjaEmrE protein transports positively charged aromatic drugs (xenobiotics) in exchange for two protons and thus provides bacteria resistance to variety of drugs. In order to understand how this protein may recognize ligands, the monomer and asymmetric apo-form of the EmrE dimer embedded in a heterogeneous phospholipid (POPE + POPG) membrane were studied by molecular dynamics simulations. Dimer is regarded as a functional form of the...
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Systems of boundary value problems of advanced differential equations
PublikacjaThis paper considers the existence of extremal solutions to systems of advanced differential equations with corresponding nonlinear boundary conditions. The monotone iterative method is applied to obtain the existence results. An example is provided for illustration.
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VIBRATION PROBLEMS OF AN EXAMPLE OF TEMPORARY STEEL GRANDSTAND UNDER HUMAN-INDUCED EXCITATION
PublikacjaLighter and slender structural members of a typical grandstand leads to a significant reduction in the frequencies, that is why such structures are more easily induced to vibrations. The aim of the present paper is to show the results of our experimental studies and the numerical analyses, focused on the behaviour of a part of a typical temporary steel grandstand under dynamic loads. The peak values of accelerations of a steel...
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Wideband Macromodels in Finite Element Method
PublikacjaThis letter proposes a novel projection technique for accelerating Finite Element Method simulations. The algorithm is based on the Second-order Arnoldi Method for Passive Order Reduction (SAPOR). It involves generation of two projection bases and thanks to this it is applicable to the systems of equations, which contain the quadratic frequency-dependence in the input term, that arise when projection is applied locally in the selected...
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WPŁYW ZDERZAKÓW NA ODPOWIEDŹ ZDERZAJĄCYCH SIĘ KONSTRUKCJI STALOWYCH PODDANYCH OBCIĄŻENIOM SEJSMICZNYM
PublikacjaTrzęsienia ziemi są jednymi z najbardziej nieprzewidywalnych obciążeń jakie mogą oddziaływać na konstrukcje budowlane. Szczególnie wrażliwe na te obciążenia są konstrukcje blisko sąsiadujące ze sobą, które pod wpływem obciążeń sejsmicznych mogą się ze sobą zderzać. Zjawisko zderzeń, które może prowadzić do znacznych zniszczeń, a nawet zawalenia się budynków, wynika głównie z niedostatecznej przerwy pomiędzy konstrukcjami oraz z...
Rok 2018
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Structural and dynamic insights on the EmrE protein with TPP+ and related substrates through molecular dynamics simulations
PublikacjaEmrE is a bacterial transporter protein that forms an anti-parallel homodimer with four transmembrane helices in each monomer. EmrE transports positively charged aromatic compounds, such as TPP+ and its derivatives. We performed molecular dynamics (MD) simulations of EmrE in complex with TPP+, MeTPP+, and MBTPP+ embedded in a membrane. The detailed molecular properties and interactions were analysed for all EmrE-ligand complexes....
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Study on 19th-century cast iron columns from the former financial office building in Kwidzyn
PublikacjaThe article presents the results for cast iron columns used as floor supports in the former financial office building in Kwidzyn (Poland).The stocktaking drawings provided the general and detailed data about the 19th century designer’s decisions. During the research, architectural and structural analysis was carried out. The graphics were used as a starting material for preparing 3D calculation models. The FEM-based numerical simulations...
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The effectiveness of polymer adhesive in reduction of vibrations of structural members
PublikacjaIn this paper, the idea of using polymer adhesive as a damping layer is proposed. An experimental study of two aluminium cantilevered beams has been conducted. One of them presents a plain cantilevered beam, while the second one considers two aluminium beams bonded with a polymer adhesive of different thickness (0,5; 1,2; 1,75; 3,1 and 5 mm). The polymer adhesive considered in the study is a specially designed flexible...
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The structurally similar TRFH domain of TRF1 and TRF2 dimers shows distinct behaviour towards TIN2
PublikacjaThe telomere repeat binding-factor 1 and 2 (TRF1 and TRF2) proteins of the shelterin complex bind to duplex telomeric DNA as homodimers, and the homodimerization is mediated by their TRFH (TRF-homology) domains. We performed molecular dynamic (MD) simulations of the dimer forms of TRF1TRFH and TRF2TRFH in the presence/absence of the TIN2TBM (TIN2, TRF-interacting nuclear protein 2, TBM, TRF-binding motif) peptide. The MD results...
Rok 2019
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Structural, functional, and stability change predictions in human telomerase upon specific point mutations,
PublikacjaOverexpression of telomerase is one of the hallmarks of human cancer. Telomerase is important for maintaining the integrity of the ends of chromosomes, which are called telomeres. A growing number of human disease syndromes are associated with organ failure caused by mutations in telomerase (hTERT or hTR). Mutations in telomerase lead to telomere shortening by decreasing the stability of the telomerase complex, reducing its accumulation,...
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The Idea of Using Bayesian Networks in Forecasting Impact of Traffic-Induced Vibrations Transmitted through the Ground on Residential Buildings
PublikacjaTraffic–induced vibrations may constitute a considerable load to buildings. In this paper, vibrations transmitted through the ground caused by wheeled vehicles are considered. This phenomenon may cause cracking of plaster, cracks in load-bearing elements or even, in extreme cases, collapse of the whole structure. Measurements of vibrations of real structures are costly and laborious. Therefore, the aim of the present paper is to...
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Verification of Formulas for Periods of Adjacent Buildings Used to Assess Minimum Separation Gap Preventing Structural Pounding during Earthquakes
PublikacjaInsufficient separation distance between adjacent buildings may lead to serious damages during earthquakes due to structural pounding. The best way to prevent collisions is to provide sufficiently large separation distance between the structures. In this paper, the periods of two closely-spaced linear and nonlinear buildings have been investigated so as to accurately assess the minimum in-between separation gap. A new equation...
Rok 2008
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Structural pounding models with Hertz spring and nonlinear damper
PublikacjaW artykule przedstawiono porównanie możliwości wykorzystania dwóch modeli zderzeń: nieliniowego modelu lepkosprężystego i modelu Hertz'a z dodatkowym tłumieniem. Efektywność każdego z modeli zbadano porównując wyniki analiz numerycznych z wynikami badań eksperymentalnych. Wyniki pracy pokazują, iż zastosowanie nieliniowego modelu lepkosprężystego prowadzi do mniejszych błędów w przebiegach czasowych siły zderzenia oraz do mniejszych...
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Towards automated full-wave design of microwave structures
PublikacjaArtykuł przedstawia problematykę automatycznego projektowania układów mikrofalowych i jego znaczenie. przedstawia stan rynku narzędzi projektowania, pojawiąjące się rozwiązania i przyszłe trendy.
Rok 2020
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Study on Methods to Control Interstory Deflections
PublikacjaOne of the possibilities to prevent building pounding between two adjacent structures is to consider appropriate in-between separation distance. Another approach might be focused on controlling the relative displacements during seismic excitations. Although the majority of building codes around the world recommend the use of some equations of various distances between structures to avoid pounding; a lot of reports after earthquakes...
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Study on Polymer Elements for Mitigation of Earthquake-Induced Pounding Between Buildings in Complex Arrangements
PublikacjaPounding between neighboring structures during seismic events has been revealed as one of the most commonly observed reasons for severe damage or even total collapse of the adjacent buildings. Therefore, pounding effects have recently become an issue of great interest of many numerical and experimental investigations in many earthquake-prone regions of the world. It has also been observed that the differences in dynamic characteristics...
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Utilizing Genome-Wide mRNA Profiling to Identify the Cytotoxic Chemotherapeutic Mechanism of Triazoloacridone C-1305 as Direct Microtubule Stabilization
PublikacjaRational drug design and in vitro pharmacology profiling constitute the gold standard in drug development pipelines. Problems arise, however, because this process is often dicult due to limited information regarding the complete identification of a molecule’s biological activities. The increasing aordability of genome-wide next-generation technologies now provides an excellent opportunity to understand a compound’s diverse eects...
Rok 2017
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Study on polymer elements for mitigation of earthquake-induced pounding between buildings in complex arrangements
PublikacjaPounding between neighbouring buildings during earthquakes has been identified as one of the reasons for substantial damage or even total collapse of colliding structures, so it has been the subject of numerous studies in the recent years. A major reason leading to interactions between adjacent, insufficiently separated structures results from the differences in their dynamic properties. The problem is much more complicated for...
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The Processing Procedure for the Interpretation of Microseismic Signal Acquired from a Surface Array During Hydraulic Fracturing in Pomerania Region in Poland
PublikacjaHydraulic fracturing is a procedure of injecting high pressure fluid into the wellbore in order to break shell rock and facilitate gas flow. It is a very costly procedure and, if not conducted properly, it may lead to environmental pollution. To avoid costs associated with pumping fluid outside the perspective (gas rich) zone and improve one’s knowledge about the reservoir rock, microseismic monitoring can be applied. The method...
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Timber Frame Houses with Different Insulation Materials - Seismic Analysis
PublikacjaThe aim of this article is to present results of a dynamic numerical analysis focused on the response of two timber frame building structures exposed to seismic excitations. The first structure was insulated with mineral wool, while the second one with polyurethane foam. Specifications and technology involved in the models' construction are based on the previously conducted experimental study, upon which numerical structural models...
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Zero-Pole Electromagnetic Optimization
PublikacjaA fast technique for the full-wave optimization of transmission or reflection properties of general linear timeinvariant high-frequency components is proposed. The method is based on the zeros and poles of the rational function representing the scattering parameters of the device being designed and it is the generalization of the technique developed for the design by optimization of microwave filters. The performance of the proposed...
Rok 2016
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Substrate-integrated waveguide (SIW) filter design using space mapping
PublikacjaIn this paper, we present a fast technique for an automated design of microwave filters in substrate integrated wave (SIW) technology. The proposed methodology combines the space mapping technique with a cost function defined using the location of complex zeros and poles of filter’s transfer and reflection function and uses a rectangular waveguide as a surrogate model. The effectiveness of the proposed technique is presented with...
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Teaching civil engineering in English at Gdansk University of Technology
PublikacjaThe effects of globalization, as well as many possibilities of easy and cheap ways of travelling, have led to the increase in number of different types of university studies conducted in English. This paper describes advantages and disadvantages after seven years of experience of conducting three-semester MSc Studies in Civil Engineering in English at Gdansk University of Technology, Poland. The studies started in 2009 after a...
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The application of neural networks in forecasting the influence of traffic-induced vibrations on residential buildings
PublikacjaTraffic-induced vibrations may cause the cracking of plaster, damage to structural elements and, in extreme cases, may even lead to the structural collapse of residential buildings. The aim of this article is to analyse the effectiveness of a method of forecasting the impact of vibrations on residential buildings using the concept of artificial intelligence. The article presents several alternative forecasting systems for which...
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The Effectiveness of Polymer Damper in Damage Reduction of Temporary Steel Grandstand
PublikacjaA large number of accidents involving damage of temporary grandstands during different types of events were observed in the past. The aim of the paper is to analyse numerically the effectiveness of a polymer damper in damage reduction of a temporary steel scaffolding grandstand exposed to dynamic load due to jumping. The element has been installed as a diagonal one at the back part of the structure. The method has been compared...
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The response of three colliding models of steel towers to seismic excitation
PublikacjaA number of past and recent observations have confirmed that collisions between adjacent, insufficiently-separated structures occurring as a result of seismic excitation (structural pounding) may result in serious damage to structural elements and can even lead to their total destruction. This paper summarises the results obtained from a shaking table experimental study which investigated structural pounding between three adjacent...
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Timber-frame house resistant to dynamic loads - analysis of wall panel filled with polyurethane foam
PublikacjaThe present study shows the experimentally and numerically determined response of a single timber-frame house wall panel filled with polyurethane (PU) foam under dynamic loads. The harmonic tests were conducted for the following frequencies: 0.5 Hz, 1.0 Hz, 2.0 Hz and 5.0 Hz for various values of the specified displacement. Based on the results of the comparison between the experimental tests and the numerical analyses, the numerical...
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Wpływ zderzaków na odpowiedź kolidujacych ze sobą konstrukcji stalowych poddanych obciążeniom sejsmicznym
PublikacjaXXI wiek oraz bardzo wysoki poziom urbanizacji stanowi duże wyzwanie dla inżynierów. Stopień zagęszczenia budynków, z uwagi na coraz mniejsze możliwości wykorzystywania terenów pod zabudowę, jest ważnym czynnikiem branym pod uwagę podczas projektowania budynków – szczególnie tych, które leżą w strefach zagrożonych wstrząsami sejsmicznymi. Obciążenia sejsmiczne są jednymi z najbardziej nieprzewidywalnych i katastrofalnych w skutkach...
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Wykorzystanie sztucznych sieci neuronowych do szacowania wpływu drgań na budynki jednorodzinne
PublikacjaW artykule przedstawiono metodę prognozowania wpływu drgań na budynki mieszkalne z wykorzystaniem sztucznych sieci neuronowych. Drgania komunikacyjne mogą doprowadzić do uszkodzenia elementów konstrukcyjnych, a nawet do awarii budynku. Najczęstszym efektem są jednak rysy, pękanie tynku i wypraw. Metody oparte na sztucznej inteligencji są przybliżone, ale stanowią wystarczająco dokładną i ekonomiczną alternatywę dla tradycyjnych...
Rok 2010
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Synthesis of coupled lossy resonator filters.
PublikacjaA technique for fast synthesis of coupling matrix low-pass prototypes of generalized. Chebyshev bandpass filters with lossy resonators is presented in this letter. The coupling matrix is found by solving a nonlinear least squares problem based on zeros and poles of filter's transfer functions.
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Tuning matrix-vector multiplication on GPU
PublikacjaA matrix times vector multiplication (matvec) is a cornerstone operation in iterative methods of solving large sparse systems of equations such as the conjugate gradients method (cg), the minimal residual method (minres), the generalized residual method (gmres) and exerts an influence on overall performance of those methods. An implementation of matvec is particularly demanding when one executes computations on a GPU (Graphics...
Rok 2004
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Szybka synteza prototypów filtrów rezonatorowych dla systemów telekomunikacji bezprzewodowej.
PublikacjaW niniejszym komunikacie opisana jest szybka technika syntezy macierzy sprzężeń. Synteza oparta jest na rozwiązaniu problemu programowania kwadratowego.Takie sformułowanie zagadnienia pozwala na znalezienie wartości sprzężeń miedzy poszczególnymi rezonatorami oraz miedzy rezonatorami a źródłem i obciążeniem jedynie wkilku krokach.
Rok 2013
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Technologia budowy domów drewnianych o konstrukcji szkieletowej odpornych na wpływy dynamiczne-Eksperymentalne badania modeli ścian zewnętrznych
PublikacjaDrewno to najstarszy i jednocześnie najszerzej stosowany materiał w budownictwie. Dosztywnienie konstrukcji drewnianych, a co za tym idzie zwiększanie częstotliwości drgań własnych takich konstrukcji przyczynia się do poprawienia ich odporność na oddziaływania dynamiczne, w tym na wpływy sejsmiczne i parasejsmiczne. Celem niniejszego artykułu jest przedstawienie wyników badań eksperymentalnych przeprowadzonych na specjalnie w tym...
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The Effect of Sterols on Amphotericin B Self-Aggregation in a Lipid Bilayer as Revealed by Free Energy Simulations
PublikacjaAmphotericin B (AmB) is an effective but toxic antifungal drug, known to increase the permeability of the cell membrane, presumably by assembling into transmembrane pores in a sterol-dependent manner. The aggregation of AmB molecules in a phospholipid bilayer is, thus, crucial for the drug’s activity. To provide an insight into the molecular nature of this process, here, we report an atomistic molecular dynamics simulation study...
Rok 2022
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The Effectiveness of Rubber Bumpers in Reducing the Effects of Earthquake-Induced Pounding between Base-Isolated Buildings
PublikacjaTh e methods for preventing earthquake-induced structural pounding between two adjacent buildings include ensuring a sufficient separation distance between them or decreasing their relative displacement during seismic excitation. Some equations or even specific values of such gap sizes between two buildings have been introduced so as to avoid collisions. Increasing the stiffness of buildings, using tuned mass dampers, applying...
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Using Minimum Actuators to Control Shape and Stress of a Double Layer Spherical Model Under Gravity and Lateral Loadings
PublikacjaSpherical domes are picturesque structures built in developed countries to attract tourists. Due to horizontal and vertical overloading, the structures’ attractive shapes may be disturbed, and some members' stress may exceed the elastic level. In this paper, the shape and stress of a deformed double-layer spherical numerical model due to simultaneous lateral and vertical loadings are controlled, meanwhile, the number of actuators...
Rok 2014
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THE INFLUENCE OF POLYMER STRIPS IN REDUCTION OF A STEEL GRANDSTAND VIBRATIONS
PublikacjaGrandstands are types of structures commonly used during sport events or music concerts. Dynamic loads generated by crowd movement may have significant influence on human perception as well as may lead to the destruction of a structure. Lighter and more slender structural steel members are more easily excitable by spectators. If the synchronized movement is tuned with the natural frequency of the affected part of the structure,...
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Traffic-induced vibrations. The impact on buildings and people
PublikacjaTraffic-induced vibrations have recently been of major concern to engineers as one of the aspects of so called physical environmental pollution. The interest is related to the observations of serious negative effects of such kind of vibrations on buildings and their inhabitants. Traffic-induced vibrations may cause plaster cracks, structural damage and even failure and collapse of the structure. They may also be the reason of serious...
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Zero-Pole Space Mapping for CAD of Filters
PublikacjaIn this paper, we propose a new space-mapping technique tailored to the CAD of microwave filters. The goal of space mapping is to achieve a satisfactory design with the minimal number of fine model evaluations. In our approach, the filter is represented by a rational function. To quickly align the coarse and fine models, and to speed up the direct optimization of the coarse model, we propose matching the zeros and poles of a rational...
Rok 2012
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The influence of temperature on properties of the polymer flexible joint used for strengthening historical masonries
PublikacjaA new method of repairing damaged structures by filling the cracks with a specially prepared elastomeric polymer mass has been recently proposed. This new and innovative technique, known as the Flexible Joint Method (FJM), is mainly dedicated to masonries and historical objects, where minimum intervention is permitted. The flexible joint bonds the disrupted elements and ensures further safe exploitation of a damaged structure....
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Zero-pole approach to computer aided design of in-line siw filters with transmission zeros
PublikacjaThis paper presents a design of a new type of in-line pseudo-elliptic filters implemented in substrate integrated waveguide(SIW) technology. To realize transmission zeros in in-line topology,frequency-dependent couplings were used. Such dispersive couplingswere implemented as shorted stubs. The design process startswith the generation of a suitable starting point. To this end, anapproximation of SIW as a rectangular waveguide is...
Rok 2007
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Theoretical and experimental assessment of parameters for the non-linear viscoelastic model of structural pounding
PublikacjaZjawisko zderzeń pomiędzy sąsiednimi konstrukcjami budowlanymi podczas trzęsień ziemi jest w ostatnim czasie intensywnie badane z wykorzystaniem różnych modeli numerycznych siły zderzenia w czasie kontaktu. Wyniki badań eksperymentalnych pokazują, iż nieliniowy model lepko-sprężysty jest najdokładniejszy wśród modeli stosowanych do analizy. Model ten zdefiniowany jest poprzez dwa parametry: liczbę tłumienia zderzenia oraz parametr...
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Trzęsienia ziemi w Polsce w roku 2004
PublikacjaW 2004 roku na terenie Polski wystąpiły dwa trzęsienia ziemi o magnitudach ok. 4,6 - 4,9 w skali Richtera. Wstrząsy sejsmiczne, oprócz oczywistych negatywnych odczuć mieszkańców, spowodowały szereg uszkodzeń obiektów budowlanych, na szczęście nie wywołując poważnych zagrożeń ich bezpieczeństwa. W artykule przedstawiono opis zaistniałych zjawisk oraz ocenę ich intensywności i wpływu na obiekty budowlane, podając ilustrowane przykłady...
Rok 2005
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Thermodynamic and electrostatic properties of ternary Oxytricha nova TEBP-DNA complex
PublikacjaZa pomocą metod chemi obliczeniowej badano właściwości molekularne kompleksu telomerowego białka TEBP z Oxytricha nova w kompleksie trójskkładnikowym z DNA o sekwencji telomerowej. Wyliczone wartości energii kompleksowania wskazują specyficznie na jedną z dróg tworzenia kompleksu, gdzie wpierw podjednostka alfa łaczy się z DNA a następnie podjednostka beta dołącza się do takiego dwuskładnikowego kompleksu. Policzone rozkłady molekularnego...
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Trzęsienia ziemi 21 września 2004 r. w Polsce północno-wschodniej oraz ich wpływ na obiekty budowlane
Publikacja21 września 2004 roku w Polsce północno-wschodniej wystąpiły wstrząsy sejsmiczne o magnitudach szacowanych na 4,4 - 5,3 w skali Richtera. W artykule przedstawiono opis zaistniałych zjawisk oraz ocenę ich intensywności i wpływu na konstrukcje budowlane, podając ilustrowane przykłady charakterystycznych uszkodzeń.
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Trzęsienie ziemi 30 listopada 2004 r. na Podhalu oraz jego wpływ na obiekty budowlane
Publikacja30 listopada 2004 roku na Podhalu wystąpiło trzęsienie ziemi o magnitudzie szacowanej na 4,7 w skali Richtera. W artykule przedstawiono opis zaistniałego zjawiska, ocenę intensywności oraz wpływu na konstrukcje budowlane, podając ilustrowane przykłady charakterystycznych uszkodzeń.
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Wieloparametryczne, matematyczne modele zastępcze układów mikrofalowych
PublikacjaArtykuł przedstawia technikę tworzenia wieloparametrycznych modeli zastępczych układów mikrofalowych na podstawie wyników analizy pełnofalowej, wykorzystującą interpolację wymierną funkcji wielu zmiennych. Powstały problem interpolacyjny rozwiązywany jest metodą najmniejszych kwadratów. Procedura tworzenia modelu jest w pełni zautomatyzowana, adaptacyjnie dobieranie są zarówno położenia próbek jak i rząd modelu. Dołączone są przykłady...
Rok 2023
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Three-dimensional numerical investigation of hybrid nanofluids in chain microchannel under electrohydrodynamic actuator
PublikacjaEnergy efficiency enhancement methods have received considerable attentionwithin the industry and scientific community, owing to the rising concern ofglobal energy sustainability. The present article attempts to scrutinize the effectsof electrohydrodynamics and nanofluids on the rate of heat transfer and fluidflow in the 3-D chain microchannels. Improved heat exchangers (e.g., chainmicrochannel) would have a key role in increasing...
Rok 2021
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Triazoloacridone C-1305 impairs XBP1 splicing by acting as a potential IRE1α endoribonuclease inhibitor
PublikacjaInositol requiring enzyme 1 alpha (IRE1α) is one of three signaling sensors in the unfolding protein response (UPR) that alleviates endoplasmic reticulum (ER) stress in cells and functions to promote cell survival. During conditions of irrevocable stress, proapoptotic gene expression is induced to promote cell death. One of the three signaling stressors, IRE1α is an serine/threonine-protein kinase/endoribonuclease (RNase) that...
Rok 2011
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Tuning a Hybrid GPU-CPU V-Cycle Multilevel Preconditioner for Solving Large Real and Complex Systems of FEM Equations
PublikacjaThis letter presents techniques for tuning an accelerated preconditioned conjugate gradient solver with a multilevel preconditioner. The solver is optimized for a fast solution of sparse systems of equations arising in computational electromagnetics in a finite element method using higher-order elements. The goal of the tuning is to increase the throughput while at the same time reducing the memory requirements in order to allow...