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dr inż. Agnieszka Mikołajczyk-Bareła
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Catalog Publications
Year 2022
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Deep learning-based waste detection in natural and urban environments
PublicationWaste pollution is one of the most significant environmental issues in the modern world. The importance of recycling is well known, both for economic and ecological reasons, and the industry demands high efficiency. Current studies towards automatic waste detection are hardly comparable due to the lack of benchmarks and widely accepted standards regarding the used metrics and data. Those problems are addressed in this article by...
Year 2021
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A Comprehensive Analysis of Deep Neural-Based Cerebral Microbleeds Detection System
PublicationMachine learning-based systems are gaining interest in the field of medicine, mostly in medical imaging and diagnosis. In this paper, we address the problem of automatic cerebral microbleeds (CMB) detection in magnetic resonance images. It is challenging due to difficulty in distinguishing a true CMB from its mimics, however, if successfully solved it would streamline the radiologists work. To deal with this complex three-dimensional...
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TOWARDS EXPLAINABLE CLASSIFIERS USING THE COUNTERFACTUAL APPROACH - GLOBAL EXPLANATIONS FOR DISCOVERING BIAS IN DATA
PublicationThe paper proposes summarized attribution-based post-hoc explanations for the detection and identification of bias in data. A global explanation is proposed, and a step-by-step framework on how to detect and test bias is introduced. Since removing unwanted bias is often a complicated and tremendous task, it is automatically inserted, instead. Then, the bias is evaluated with the proposed counterfactual approach. The obtained results...
Year 2020
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Explainable AI for Inspecting Adversarial Attacks on Deep Neural Networks
PublicationDeep Neural Networks (DNN) are state of the art algorithms for image classification. Although significant achievements and perspectives, deep neural networks and accompanying learning algorithms have some important challenges to tackle. However, it appears that it is relatively easy to attack and fool with well-designed input samples called adversarial examples. Adversarial perturba-tions are unnoticeable for humans. Such attacks...
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Neural Architecture Search for Skin Lesion Classification
PublicationDeep neural networks have achieved great success in many domains. However, successful deployment of such systems is determined by proper manual selection of the neural architecture. This is a tedious and time-consuming process that requires expert knowledge. Different tasks need very different architectures to obtain satisfactory results. The group of methods called the neural architecture search (NAS) helps to find effective architecture...
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Self-Supervised Learning to Increase the Performance of Skin Lesion Classification
PublicationTo successfully train a deep neural network, a large amount of human-labeled data is required. Unfortunately, in many areas, collecting and labeling data is a difficult and tedious task. Several ways have been developed to mitigate the problem associated with the shortage of data, the most common of which is transfer learning. However, in many cases, the use of transfer learning as the only remedy is insufficient. In this study,...
Year 2019
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DIAGNOSIS OF MALIGNANT MELANOMA BY NEURAL NETWORK ENSEMBLE-BASED SYSTEM UTILISING HAND-CRAFTED SKIN LESION FEATURES
PublicationMalignant melanomas are the most deadly type of skin cancer but detected early have high chances for successful treatment. In the last twenty years, the interest of automated melanoma recognition detection and classification dynamically increased partially because of public datasets appearing with dermatoscopic images of skin lesions. Automated computer-aided skin cancer detection in dermatoscopic images is a very challenging task...
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MACHINE LEARNING SYSTEM FOR AUTOMATED BLOOD SMEAR ANALYSIS
PublicationIn this paper the authors propose a decision support system for automatic blood smear analysis based on microscopic images. The images are pre-processed in order to remove irrelevant elements and to enhance the most important ones - the healthy blood cells (erythrocytes) and the pathologic (echinocytes). The separated blood cells are analyzed in terms of their most important features by the eigenfaces method. The features are the...
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Selected Technical Issues of Deep Neural Networks for Image Classification Purposes
PublicationIn recent years, deep learning and especially Deep Neural Networks (DNN) have obtained amazing performance on a variety of problems, in particular in classification or pattern recognition. Among many kinds of DNNs, the Convolutional Neural Networks (CNN) are most commonly used. However, due to their complexity, there are many problems related but not limited to optimizing network parameters, avoiding overfitting and ensuring good...
Year 2018
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Analiza istotności cech znamion skórnych dla celów diagnostyki czerniaka złośliwego
PublicationPomimo dynamicznego rozwoju metod uczenia maszynowego i ich wdrażania do praktyki lekarskiej, automatyczna analiza znamion skórnych wciąż jest nierozwiązanym problemem. Poniższy artykuł proponuje zastosowanie algorytmu ewolucyjnego do zaprojektowania, wytrenowania i przetestowania całych populacji klasyfikatorów (sztucznych sieci neuronowych) oraz ich iteracyjnego udoskonalania w każdej kolejnej populacji, w celu osiągnięcia jak...
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Data augmentation for improving deep learning in image classification problem
PublicationThese days deep learning is the fastest-growing field in the field of Machine Learning (ML) and Deep Neural Networks (DNN). Among many of DNN structures, the Convolutional Neural Networks (CNN) are currently the main tool used for the image analysis and classification purposes. Although great achievements and perspectives, deep neural networks and accompanying learning algorithms have some relevant challenges to tackle. In this...
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Optimal selection of input features and an acompanying neural network structure for the classification purposes - skin lesions case study
PublicationMalignant melanomas are the most deadly type of skin cancers however detected early enough give a high chances for successful treatment. The last years saw the dynamic growth of interest of automatic computer-aided skin cancer diagnosis. Every month brings new research results on new approaches to this problem, new methods of preprocessing, new classifiers, new ideas to follow etc. In particular, the rapid development of dermatoscopy,...
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Optimal Selection of Input Features and an Acompanying Neural Network Structure for the Classification Purposes - Skin Lesions Case Study
Publication
Year 2017
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Computed aided system for separation and classification of the abnormal erythrocytes in human blood
PublicationThe human peripheral blood consists of cells (red cells, white cells, and platelets) suspended in plasma. In the following research the team assessed an influence of nanodiamond particles on blood elements over various periods of time. The material used in the study consisted of samples taken from ten healthy humans of various age, different blood types and both sexes. The markings were leaded by adding to the blood unmodified...
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DEEP CONVOLUTIONAL NEURAL NETWORKS AS A DECISION SUPPORT TOOL IN MEDICAL PROBLEMS – MALIGNANT MELANOMA CASE STUDY
PublicationThe paper presents utilization of one of the latest tool from the group of Machine learning techniques, namely Deep Convolutional Neural Networks (CNN), in process of decision making in selected medical problems. After the survey of the most successful applications of CNN in solving medical problems, the paper focuses on the very difficult problem of automatic analyses of the skin lesions. The authors propose the CNN structure...
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Deep neural networks approach to skin lesions classification — A comparative analysis
PublicationThe paper presents the results of research on the use of Deep Neural Networks (DNN) for automatic classification of the skin lesions. The authors have focused on the most effective kind of DNNs for image processing, namely Convolutional Neural Networks (CNN). In particular, three kinds of CNN were analyzed: VGG19, Residual Networks (ResNet) and the hybrid of VGG19 CNN with the Support Vector Machine (SVM). The research was carried...
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Intelligent system supporting diagnosis of malignant melanoma
PublicationMalignant melanomas are the most deadly type of skin cancers. Early diagnosis is a key for successful treatment and survival. The paper presents the system for supporting the process of diagnosis of skin lesions in order to detect a malignant melanoma. The paper describes the development process of an intel-ligent system purposed for the diagnosis of malignant melanoma. Presented sys-tem can be used as a decision support system...
Year 2016
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Analiza znamion skórnych przy pomocy metod przetwarzania obrazu i algorytmów inteligencji obliczeniowej
PublicationNowotwory skóry są najczęściej spotykanymi nowotworami na świecie. Czerniaki złośliwe stanowią od około 5 do 7% wszystkich nowotworów złośliwych skóry u człowieka. Celem pracy była budowa zautomatyzowanego systemu do diagnostyki znamion skórnych pod kątem wykrycia czerniaka złośliwego. Omawiane narzędzie powinno służyć jako system wspomagania decyzji dla lekarzy pierwszego kontaktu lub jako system...
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SYSTEM WSPOMAGAJĄCY DIAGNOSTYKĘ CZERNIAKA ZŁOŚLIWEGO PRZY POMOCY METOD PRZETWARZANIA OBRAZU I ALGORYTMÓW INTELIGENCJI OBLICZENIOWEJ
PublicationNowotwory skóry są najczęściej spotykanymi nowotworami na świecie. Czerniaki złośliwe stanowią od około 5 do 7% wszystkich nowotworów złośliwych skóry u człowieka. Ich wczesne zdiagnozowanie jest kluczowym czynnikiem w późniejszej pomyślnej terapii. Niniejsza praca zawiera propozycję rozwinięcia i zautomatyzowania najważniejszej metody diagnozowania czerniaków, metody ABCD Stoltza. W artykule przedstawiono koncepcję i implementację...
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Zero phase shift digital filtering for assessment of exposure to non-sinusoidal magnetic fields
PublicationAccuracy of assessment of human body exposure to magnetic fields is affected by several uncertainty sources. One of them is estimation of the total exposure to non-sinusoidal fields. Standard methods can be implemented using analogue or digital filters that introduce a phase shift that affect the result of total exposure level estimation. The paper presents a new method that allows performing more precise assessment of exposure...
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