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Search results for: DSB PROTEINS
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A coarse‐grained approach to NMR ‐data‐assisted modeling of protein structures
PublicationThe ESCASA algorithm for analytical estimation of proton positions from coarse-grained geometry developed in our recent work has been implemented in modeling protein structures with the highly coarse-grained UNRES model of polypeptide chains (two sites per residue) and nuclear magnetic resonance (NMR) data. A penalty function with the shape of intersecting gorges was applied to treat ambiguous distance restraints, which automatically...
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Modified Peptide Molecules As Potential Modulators of Shelterin Protein Functions; TRF1
PublicationIn this work, we present studies on relatively new and still not well-explored potential anticancer targets which are shelterin proteins, in particular the TRF1 protein can be blocked by in silico designed "peptidomimetic" molecules. TRF1 interacts directly with the TIN2 protein, and this protein-protein interaction is crucial for the proper functioning of telomere, which could be blocked by our novel modified peptide molecules....
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Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment
PublicationWe present the results for CAPRI Round 54, the 5th joint CASP-CAPRI protein assembly prediction challenge. The Round offered 37 targets, including 14 homodimers, 3 homo-trimers, 13 heterodimers including 3 antibody–antigen complexes, and 7 large assemblies. On average 70 CASP and CAPRI predictor groups, including more than 20 automatics servers, submitted models for each target. A total of 21 941 models submitted by these groups...
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Changes in mussel Mytilus galloprovincialis protein profile as a reaction of water pollution
PublicationW pracy przedstawiono zmiany w profilu białkowym małża Mytilus galloprovincialis jako odpowiedź na zanieczyszczenia wody. Określono pojemność przeciwutleniającą z wykorzystaniem testu TEAC. Stwierdzono różnice w poziomie inhibicji w białku pochodzącym od małży zebranych z regionów zanieczyszczonych w stosunku do małży pochodzących z regionów czystych.Zawartość cynku i kadmu w białkach małży pochodzących z regionów zanieczyszczonych...
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Influence of milk, milk fractions and milk proteins on the growth and viability of mastitis-causing Staphylococcus aureus strain
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Molecular Characterisation of Uterine Endometrial Proteins during Early Stages of Pregnancy in Pigs by MALDI TOF/TOF
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Combining the MARTINI and Structure-Based Coarse-Grained Approaches for the Molecular Dynamics Studies of Conformational Transitions in Proteins
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Fibronectin-, vitronectin- and laminin-binding proteins at the cell walls of Candida parapsilosis and Candida tropicalis pathogenic yeasts
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Evolution of functionally important compartments of proteins – what can we learn from studying epoxide hydrolases?
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Photoactive Protochlorophyllide-Enzyme Complexes Reconstituted with PORA, PORB and PORC Proteins of A. thaliana: Fluorescence and Catalytic Properties
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The Major Heat Shock Proteins, Hsp70 and Hsp90, in 2-Methoxyestradiol-Mediated Osteosarcoma Cell Death Model
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Impact of the depletion of high-abundance proteins in blood plasma/serum on the proteome of these media in growing farm animals
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Borrelia burgdorferi BmpA-BBK32 and BmpA-BBA64: New Recombinant Chimeric Proteins with Potential Diagnostic Value
PublicationCurrently, the diagnosis of Lyme disease is based mostly on two-tiered serologic testing. In the new generation of immunoenzymatic assays, antigens comprise whole-cell lysates of members of the Borrelia burgdorferi sensu lato (s.l.) species complex, with the addition of selected recombinant proteins. Due to the high diversity of members of the B. burgdorferi s.l. genospecies and the low degree of conservation among the amino acid...
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Estimation of the aluminum salt effect on homopolymerization of acrylamide and its copolymerization with acrylic acid by DSC
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Tocopheryl Succinate-Induced Structural Changes in DPPC Liposomes: DSC and ANS Fluorescence Studies
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TG-FTIR, DSC and quantum chemical studies of the thermal decomposition of quaternary methylammonium halides
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Metoda wyboru tętniczej funkcji wejścia w badaniach mózgu techniką DSC-MRI
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Characterization of Multimodal Silicas Using TG/DTG/DTA, Q-TG, and DSC Methods
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Adaptacyjna metoda doboru przepływności przydzielanych programom radiowym nadawanym w standardzie DAB+
PublicationW artykule opisano pomiary jakości transmisji rzeczywistych programów radiowych nadawanych w standardzie DAB+. Omówiono badania ankietowe dotyczące przełączenia emisji programów radiowych z techniki analogowej FM na cyfrową DAB+. Dokonano analizy typów audycji prowadzonych w godzinie największej słuchalności pod kątem efektywnego zarządzania ograniczonymi zasobami częstotliwościowymi. Zaproponowano metodę adaptacyjnego doboru przepływności...
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SUBIEKTYWNA OCENA MULTIPLEKSU RADIOFONII LOKALNEJ DAB+ DZIAŁAJĄCEJ W GDAŃSKU I WROCŁAWIU
PublicationStandard DAB+ (Digital Audio Broadcasting plus) jest wiodącym systemem naziemnej radiofonii cyfrowej. W porównaniu do analogowej radiofonii FM wszystkie usługi, obejmujące tradycyjne programy radiowe oraz usługi transmisji danych, grupowane są w zbiór (ensemble). Praca ta przedstawia proces rekonfiguracji polskiego multipleksu na przykładzie lokalnej radiofonii DAB+ w Gdańsku i Wrocławiu. Opisuje wyniki badań subiektywnych dotyczących...
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GEOINFORMATYCZNE NARZĘDZIE DO BADANIA ZASIĘGU LOKALNYCH STACJI NADAWCZYCH RADIOFONII CYFROWEJ DAB+
PublicationKwestia zapewnienia odpowiedniego pokrycia sygnałem multipleksu jest kluczowym aspektem zarówno dla nadawców publicznych jak i prywatnych, a w szczególności lokalnych stacji zainteresowanych procesem cyfryzacji. W pracy przedstawiono geoinformatyczne narzędzie, umożliwiające badanie zasięgu lokalnych stacji nadawczych radiofonii cyfrowej DAB+. Analizę przeprowadzono dla pionierskiej w Polsce stacji LocalDAB we Wrocławiu. Wyniki...
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Four level inverter's DC bus voltage balancing with 3-terminal DAB converter
Publication—Multilevel inverters become more and more popular, especially in the medium or high voltage and high power applications. Unfortunately, some of inverter topologies require additional DC bus voltage balancing systems. This paper presents a novel approach to such systems, which is based on a multiple terminal DAB converter. Along with the voltage balancing function the proposed solution enables the connection of energy storage devices...
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Zastosowanie metod NMR i DSC do badania mieszanek zawierających olej palmowy
PublicationW pracy badano olej palmowy oraz mieszanki oleju palmowego z uwodornionym lub ciekłym olejem rzepakowym o różnym składzie procentowym. W metodach NMR i DSC stosowano podobne sposoby termostatowania tzn. próbki przed analizą były termostatowane przez 1 godz. w temp 0oC (podobnie jak tłuszcz uwodorniony w normie ISO) lub przez 16 godz. w temp. 10oC (podobnie jak olej palmowy w normie ISO). Dodatkowo metodą DSC analizowano wszystkie...
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Detekcja czasu dojścia kontrastu w obrazowaniu parametrycznym mózgu metodą DSC-MRI
PublicationW artykule tym zawarto porównanie trzech metod określania czasu dojścia kontrastu. Pierwsza z metod opiera się na załączonej literaturze, natomiast dwie zaproponowane przez autora to: dopasowanie danych do zmodyfikowanej funkcji gamma oraz detekcja bazująca na wyznaczaniu wartości progowej.
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Defining a novel domain that provides an essential contribution to site-specific interaction of Rep protein with DNA
PublicationAn essential feature of replication initiation proteins is their ability to bind to DNA. In this work, we describe a new domain that contributes to a replication initiator sequence-specific interaction with DNA. Applying biochemical assays and structure prediction methods coupled with DNA–protein crosslinking, mass spectrometry, and construction and analysis of mutant proteins, we identified that the replication initiator of the...
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Proprotein Convertase Subtilisin/Kexin Type 9, Angiopoietin-Like Protein 8, Sortilin, and Cholesteryl Ester Transfer Protein—Friends of Foes for Psoriatic Patients at the Risk of Developing Cardiometabolic Syndrome?
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Patterned protein microarrays for bacterial detection. Langmuir**2003 vol.19 s. 436-439, 5 rys. bibliogr. 25 poz. Specyficzne mikroukłady protein do wykrywania bakterii.
PublicationSkonstruowano i przetestowano specyficzne mikroukłady przeciwciał selektyw-nie wiążących bakterie. Otrzymane układy umożliwiają wykrywanie bakterii E.coli0157:H7 oraz Renibacterium salmoninarum (RS). Matryce wytworzono techni-ką nadruku mikrokontaktów (ćCP). Charakterystykę układów uzyskano stosującmikroskopię skaningową (SPM). Ustalono, że selektywność otrzymanych układówobniża się podczas ekspozycji na bakterie niespecyficzne.
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Effect of Inoculation with Probiotics and Ageing Time on Selected Functional Properties and Oxidation of Proteins in Dry-Cured Pork Loins
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Whey Proteins as a Potential Co-Surfactant with Aesculus hippocastanum L. as a Stabilizer in Nanoemulsions Derived from Hempseed Oil
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N-Substituted piperazine derivatives as potential multitarget agents acting on histamine H3 receptor and cancer resistance proteins
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Interactive effects of vanadium and phosphorus on their uptake, growth and heat shock proteins in chickpea genotypes under hydroponic conditions
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Mycobacterium tuberculosis Complex and Mycobacterial Heat Shock Proteins in Lymph Node Tissue from Patients with Pulmonary Sarcoidosis
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Enhanced extraction of proteins using cholinium-based ionic liquids as phase-forming components of aqueous biphasic systems
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Transcriptomic Profile of Genes Encoding Proteins Involved in Pathogenesis of Sjögren’s Syndrome Related Xerostomia—Molecular and Clinical Trial
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Extension of the Force Matching Method to Anisotropic Coarse-Grained Transferable Force Fields: Application to the Unres Model of Proteins
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Application of Multiplexed Replica Exchange Molecular Dynamics to the UNRES Force Field: Tests with α and α+β Proteins
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Optimization of the UNRES Force Field by Hierarchical Design of the Potential-Energy Landscape. 3. Use of Many Proteins in Optimization
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Expression profiles of vault components MVP, TEP1 and vPARP and their correlation to other multidrug resistance proteins in ovarian cancer
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Determination of the role of map kinase and PI3K/AKT signaling pathways in the regulation of multidrug resistance proteins in thyroid cancer
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Density functional theory calculations on entire proteins for free energies of binding: Application to a model polar binding site
PublicationIn drug optimization calculations, the molecular mechanics Poisson-Boltzmann surface area (MM-PBSA) method can be used to compute free energies of binding of ligands to proteins. The method involves the evaluation of the energy of configurations in an implicit solvent model. One source of errors is the force field used, which can potentially lead to large errors due to the restrictions in accuracy imposed by its empirical nature....
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Toxoplasma gondii Tetravalent Chimeric Proteins as Novel Antigens for Detection of Specific Immunoglobulin G in Sera of Small Ruminants
PublicationThe detection of Toxoplasma gondii infection in small ruminants has important significance for public health and veterinary medicine. This study, for the first time, describes the reactivity of four tetravalent chimeric proteins (AMA1N-SAG2-GRA1-ROP1, AMA1C-SAG2-GRA1-ROP1, AMA1-SAG2-GRA1-ROP1, and SAG2-GRA1-ROP1-GRA2) containing immunodominant regions from the AMA1 (apical membrane antigen 1), SAG2 (surface antigen 2), GRA1 (dense...
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A comparative study of water distribution and dehydrin protein localization in maturing pea seeds
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Mapping Mechanostable Pulling Geometries of a Therapeutic Anticalin/CTLA-4 Protein Complex
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Molecular dynamics insights into protein‐glycosaminoglycan systems from microsecond‐scale simulations
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Local and long range potentials for heparin‐protein systems for coarse‐grained simulations
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Chromatin-associated microprocessor assembly is regulated by the U1 snRNP auxiliary protein PRP40
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Hot spot identification by ligand-protein surface interactions mapping – in silico study
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Prediction of Protein Structure by Template-Based Modeling Combined with the UNRES Force Field
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Investigation of Protein Folding by Coarse-Grained Molecular Dynamics with the UNRES Force Field
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Performance of protein-structure predictions with the physics-based UNRES force field in CASP11
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