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Search results for: COMBINATORICS
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Combinatorial-topological framework for the analysis of global dynamics
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Selection of Effective HTRA3 Activators Using Combinatorial Chemistry
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Cyclic Peptidic Furin Inhibitors Developed by Combinatorial Chemistry
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Extended Hopfield models of neural networks for combinatorial multiobjective optimization problems
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Design of selective substrates of proteinase 3 using combinatorial chemistry methods
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Development of sensitive cathepsin G fluorogenic substrate using combinatorial chemistry methods
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A simple method for selection of trypsin chromogenic substrates using combinatorial chemistry approach
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Selection of New Chromogenic Substrates of Serine Proteinases Using Combinatorial Chemistry Methods
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Combinatorial scheme of finding minimal number of periodic points for smooth self-maps of simply connected manifolds
PublicationLet M be a closed smooth connected and simply connected manifold of dimension m at least 3, and let r be a fixed natural number. The topological invariant D^m_r [f], defined by the authors in [Forum Math. 21 (2009), 491-509], is equal to the minimal number of r-periodic points in the smooth homotopy class of f, a given self-map of M. In this paper, we present a general combinatorial scheme of computing D^m_r [f] for arbitrary dimension...
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Design of serine proteinase inhibitors by combinatorial chemistry using trypsin inhibitor SFTI‐1 as a starting structure
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Selection of peptomeric inhibitors of bovine α-chymotrypsin and cathepsin G based on trypsin inhibitor SFTI-1 using a combinatorial chemistry approach
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Generalized Dold sequences on partially-ordered sets
PublicationDold sequences constitute an important class of integer sequences that play an important role in combinatorics, number theory, topology and dynamical systems. We generalize the notion of Dold sequence for the case of partially ordered sets and describe their properties. In particular we give two alternative descriptions of generalized Dold sequences: by some class of elementary sequences as well as by different...
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New chromogenic substrates of human neutrophil cathepsin G containing non-natural aromatic amino acid residues in position P1 selected by combinatorial chemistry methods
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The Backbone Coloring Problem for Bipartite Backbones
PublicationLet G be a simple graph, H be its spanning subgraph and λ≥2 be an integer. By a λ -backbone coloring of G with backbone H we mean any function c that assigns positive integers to vertices of G in such a way that |c(u)−c(v)|≥1 for each edge uv∈E(G) and |c(u)−c(v)|≥λ for each edge uv∈E(H) . The λ -backbone chromatic number BBCλ(G,H) is the smallest integer k such that there exists a λ -backbone coloring c of G with backbone H satisfying...
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Some Progress on Total Bondage in Graphs
PublicationThe total bondage number b_t(G) of a graph G with no isolated vertex is the cardinality of a smallest set of edges E'⊆E(G) for which (1) G−E' has no isolated vertex, and (2) γ_t(G−E')>γ_t(G). We improve some results on the total bondage number of a graph and give a constructive characterization of a certain class of trees achieving the upper bound on the total bondage number.
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Counting Lattice Paths With Four Types of Steps
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Tighter bounds on the size of a maximum P3-matching in a cubic graph
PublicationW pracy pokazano, że największe P3-skojarzenie dla dowolnego grafu o n>16 wierzchołkach składa się z przynajmniej 117n/152 wierzchołków.
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Total Domination Versus Domination in Cubic Graphs
PublicationA dominating set in a graph G is a set S of vertices of G such that every vertex not in S has a neighbor in S. Further, if every vertex of G has a neighbor in S, then S is a total dominating set of G. The domination number,γ(G), and total domination number, γ_t(G), are the minimum cardinalities of a dominating set and total dominating set, respectively, in G. The upper domination number, \Gamma(G), and the upper total domination...
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Independent Domination Subdivision in Graphs
PublicationA set $S$ of vertices in a graph $G$ is a dominating set if every vertex not in $S$ is adjacent to a vertex in~$S$. If, in addition, $S$ is an independent set, then $S$ is an independent dominating set. The independent domination number $i(G)$ of $G$ is the minimum cardinality of an independent dominating set in $G$. The independent domination subdivision number $\sdi(G)$ is the minimum number of edges that must be subdivided (each...
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Dynamic F-free Coloring of Graphs
PublicationA problem of graph F-free coloring consists in partitioning the vertex set of a graph such that none of the resulting sets induces a graph containing a fixed graph F as an induced subgraph. In this paper we consider dynamic F-free coloring in which, similarly as in online coloring, the graph to be colored is not known in advance; it is gradually revealed to the coloring algorithm that has to color each vertex upon request as well...
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On trees attaining an upper bound on the total domination number
PublicationA total dominating set of a graph G is a set D of vertices of G such that every vertex of G has a neighbor in D. The total domination number of a graph G, denoted by γ_t(G), is the minimum cardinality of a total dominating set of G. Chellali and Haynes [Total and paired-domination numbers of a tree, AKCE International Journal of Graphs and Combinatorics 1 (2004), 69-75] established the following upper bound on the total domination...
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Average Size of a Suffix Tree for Markov Sources
PublicationWe study a suffix tree built from a sequence generated by a Markovian source. Such sources are more realistic probabilistic models for text generation, data compression, molecular applications, and so forth. We prove that the average size of such a suffix tree is asymptotically equivalent to the average size of a trie built over n independentsequences from the same Markovian source. This equivalenceis only known for memoryless...
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Parallel tabu search for graph coloring problem
PublicationTabu search is a simple, yet powerful meta-heuristic based on local search that has been often used to solve combinatorial optimization problems like the graph coloring problem. This paper presents current taxonomy of patallel tabu search algorithms and compares three parallelization techniques applied to Tabucol, a sequential TS algorithm for graph coloring. The experimental results are based on graphs available from the DIMACS...
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On Symmetry of Uniform and Preferential Attachment Graphs
PublicationMotivated by the problem of graph structure compression under realistic source models, we study the symmetry behavior of preferential and uniform attachment graphs. These are two dynamic models of network growth in which new nodes attach to a constant number m of existing ones according to some attachment scheme. We prove symmetry results for m=1 and 2 , and we conjecture that for m≥3 , both models yield asymmetry with high...
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On the total restrained domination number of a graph
PublicationW pracy przedstawione są ograniczenia i własności liczby dominowania podwójnie totalnego.
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Lower bound on the paired domination number of a tree
PublicationW pracy przedstawione jest ograniczenie dolne dla liczby dominowania parami oraz scharakteryzowane są wszystkie drzewa ekstremalne.
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On some ramsey and turan-type numbers for paths and cycles
PublicationUdowodniono, że R(P_3,C_k,C_k)= R(C_k,C_k)= 2k - 1, dla nieparzystych k. Udowodniono, że R(P_4,P_4,C_k) = k + 2 oraz R(P_3,P_5,C_k) = k + 1 dla k > 2.
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A Note on a Problem Posed by D. E. Knuth on a Satisfiability Recurrence
PublicationWe resolve a conjecture proposed by D.E. Knuth concerning a recurrence arising in the satisfiability problem. Knuth's recurrence resembles recurrences arising in the analysis of tries, in particular PATRICIA tries, and asymmetric leader election. We solve Knuth's recurrence exactly and asymptotically, using analytic techniques such as the Mellin transform and analytic depoissonization.
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On a Recurrence Arising in Graph Compression
PublicationIn a recently proposed graphical compression algorithm by Choi and Szpankowski (2012), the following tree arose in the course of the analysis. The root contains n balls that are consequently distributed between two subtrees according to a simple rule: In each step, all balls independently move down to the left subtree (say with probability p) or the right subtree (with probability 1p). A new node is created as long as...
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Strong weakly connected domination subdivisible graphs
PublicationArtykuł dotyczy wpływu podziału krawędzi na liczbę dominowania słabo spójnego. Charakteryzujemy grafy dla których podział dowolnej krawędzi zmienia liczbę dominowania słabo spójnego oraz grafy dla których podział dowolnych dwóch krawędzi powoduje zmianę liczby dominowania słabo spójnego.
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Interpolation properties of domination parameters of a graph
PublicationAn integer-valued graph function π is an interpolating function if a set π(T(G))={π(T): T∈TT(G)} consists of consecutive integers, where TT(G) is the set of all spanning trees of a connected graph G. We consider the interpolation properties of domination related parameters.
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All graphs with restrained domination number three less than their order
PublicationW pracy opisana jest rodzina wszystkich grafów, dla których liczbadominowania zewnętrznego jest o trzy mniejsza od ich rzędu.
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Lower bound on the weakly connected domination number of a tree
PublicationPraca dotyczy dolnego ograniczenia liczby dominowania słabo spójnego w drzewach (ograniczenie ze względu na ilość wierzchołków i ilość wierzchołków końcowych w drzewie).
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The outer-connected domination number of a graph
PublicationW pracy została zdefiniowana liczba dominowania zewnętrznie spójnego i przedstawiono jej podstawowe własności.
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A construction for the hat problem on a directed graph
PublicationA team of n players plays the following game. After a strategy session, each player is randomly fitted with a blue or red hat. Then, without further communication, everybody can try to guess simultaneously his own hat color by looking at the hat colors of the other players. Visibility is defined by a directed graph; that is, vertices correspond to players, and a player can see each player to whom he is connected by an arc. The...
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On-line Ramsey Numbers of Paths and Cycles
PublicationConsider a game played on the edge set of the infinite clique by two players, Builder and Painter. In each round, Builder chooses an edge and Painter colours it red or blue. Builder wins by creating either a red copy of $G$ or a blue copy of $H$ for some fixed graphs $G$ and $H$. The minimum number of rounds within which Builder can win, assuming both players play perfectly, is the \emph{on-line Ramsey number} $\tilde{r}(G,H)$. In...
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Influence of edge subdivision on the convex domination number
PublicationWe study the influence of edge subdivision on the convex domination number. We show that in general an edge subdivision can arbitrarily increase and arbitrarily decrease the convex domination number. We also find some bounds for unicyclic graphs and we investigate graphs G for which the convex domination number changes after subdivision of any edge in G.
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The convex domination subdivision number of a graph
PublicationLet G = (V;E) be a simple graph. A set D\subset V is a dominating set of G if every vertex in V - D has at least one neighbor in D. The distance d_G(u, v) between two vertices u and v is the length of a shortest (u, v)-path in G. An (u, v)-path of length d_G(u; v) is called an (u, v)-geodesic. A set X\subset V is convex in G if vertices from all (a, b)-geodesics belong to X for any two vertices a, b \in X. A set X is a convex dominating...
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Edge and Pair Queries-Random Graphs and Complexity
PublicationWe investigate two types of query games played on a graph, pair queries and edge queries. We concentrate on investigating the two associated graph parameters for binomial random graphs, and showing that determining any of the two parameters is NP-hard for bounded degree graphs.
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Reducing the number of periodic points in the smooth homotopy class of a self-map of a simply-connected manifold with periodic sequence of Lefschetz numbers
PublicationLet f be a smooth self-map of an m-dimensional (m >3) closed connected and simply-connected manifold such that the sequence of the Lefschetz num- bers of its iterations is periodic. For a fixed natural r we wish to minimize, in the smooth homotopy class, the number of periodic points with periods less than or equal to r. The resulting number is given by a topological invariant J[f] which is defned in combinatorial terms and is...
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On the connected and weakly convex domination numbers
PublicationIn this paper we study relations between connected and weakly convex domination numbers. We show that in general the difference between these numbers can be arbitrarily large and we focus on the graphs for which a weakly convex domination number equals a connected domination number. We also study the influence of the edge removing on the weakly convex domination number, in particular we show that a weakly convex domination number...
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Paired domination subdivision and multisubdivision numbers of graphs
PublicationThe paired domination subdivision number sdpr(G) of a graph G is the minimum number of edges that must be subdivided (where an edge can be subdivided at most once) in order to increase the paired domination number of G. We prove that the decision problem of the paired domination subdivision number is NP-complete even for bipartite graphs. For this reason we define the paired domination muttisubdivision number of a nonempty graph...
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An algorithmic approach to estimating the minimal number of periodic points for smooth self-maps of simply-connected manifolds
PublicationFor a given self-map f of M, a closed smooth connected and simply-connected manifold of dimension m 4, we provide an algorithm for estimating the values of the topological invariant D^m_r [f], which equals the minimal number of r-periodic points in the smooth homotopy class of f. Our results are based on the combinatorial scheme for computing D^m_r [f] introduced by G. Graff and J. Jezierski [J. Fixed Point Theory Appl. 13 (2013),...
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Weakly convex and convex domination numbers of some products of graphs
PublicationIf $G=(V,E)$ is a simple connected graph and $a,b\in V$, then a shortest $(a-b)$ path is called a $(u-v)$-{\it geodesic}. A set $X\subseteq V$ is called {\it weakly convex} in $G$ if for every two vertices $a,b\in X$ exists $(a-b)$- geodesic whose all vertices belong to $X$. A set $X$ is {\it convex} in $G$ if for every $a,b\in X$ all vertices from every $(a-b)$-geodesic belong to $X$. The {\it weakly convex domination number}...
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Unicyclic graphs with equal total and total outer-connected domination numbers
PublicationLet G = (V,E) be a graph without an isolated vertex. A set D ⊆ V (G) is a total dominating set if D is dominating and the in- duced subgraph G[D] does not contain an isolated vertex. The total domination number of G is the minimum cardinality of a total domi- nating set of G. A set D ⊆ V (G) is a total outer–connected dominating set if D is total dominating and the induced subgraph G[V (G)−D] is a connected graph. The total outer–connected...
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Packing Three-Vertex Paths in 2-Connected Cubic Graphs
PublicationW pracy rozważano problem rozmieszczanie ścieżek P3 w 2-spójnych grafach 3-regularnych. Pokazano, że w 2-spójnym grafie 3-regularnym o n wierzchołkach można zawsze pokryć 9/11 n wierzchołków przez ścieżki P3; podano także odpowiednie oszacowania górne.
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The complexity of list ranking of trees
PublicationUporządkowane kolorowanie grafu polega na takim etykietowaniu jego wierzchołków, aby każda ścieżka łącząca dwa wierzchołki o tym samym kolorze zawierała wierzchołek o kolorze wyższym. Jeśli każdy wierzchołek posiada dodatkowo listę dozwolonych dla niego etykiet, to mówimy wówczas o uporządkowanym listowym kolorowaniu wierzchołków. W pracy wskazano szereg klas grafów, dla których problem jest trudny: pełne drzewa binarne, drzewa...
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On trees with double domination number equal to total domination number plus one
PublicationA total dominating set of a graph G is a set D of vertices of G such that every vertex of G has a neighbor in D. A vertex of a graph is said to dominate itself and all of its neighbors. A double dominating set of a graph G is a set D of vertices of G such that every vertex of G is dominated by at least two vertices of D. The total (double, respectively) domination number of a graph G is the minimum cardinality of a total (double,...
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The hat problem on cycles on at least nine vertices
PublicationThe topic is the hat problem in which each of n players is randomly fitted with a blue or red hat. Then everybody can try to guess simultaneously his own hat color by looking at the hat colors of the other players. The team wins if at least one player guesses his hat color correctly, and no one guesses his hat color wrong; otherwise the team loses. The aim is to maximize the probability of winning. In this version every player...
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On some Zarankiewicz numbers and bipartite Ramsey Numbers for Quadrilateral
PublicationThe Zarankiewicz number z ( m, n ; s, t ) is the maximum number of edges in a subgraph of K m,n that does not contain K s,t as a subgraph. The bipartite Ramsey number b ( n 1 , · · · , n k ) is the least positive integer b such that any coloring of the edges of K b,b with k colors will result in a monochromatic copy of K n i ,n i in the i -th color, for some i , 1 ≤ i ≤ k . If n i = m for all i , then we denote this number by b k ( m )....