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Search results for: biophysical instrumentation
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Organic solvents aggregating and shaping structural folding of protein, a case study of the protease enzyme
PublicationLow solubility of reactants or products in aqueous solutions can result in the enzymatic catalytic reactions that can occur in non-aqueous solutions. In current study we investigated aqueous solutions containing different organic solvents / deep eutectic solvents (DESs) that can influence the protease enzyme's activity, structural, and thermal stabilities. Retroviral aspartic protease enzyme is responsible for the cleavage of the...
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Silica In Silico: A Molecular Dynamics Characterization of the Early Stages of Protein Embedding for Atom Probe Tomography
PublicationA novel procedure for the application of atom probe tomography (APT) to the structural analysis of biological systems, has been recently proposed, whereby the specimen is embedded by a silica matrix and ablated by a pulsed laser source. Such a technique, requires that the silica primer be properly inert and bio-compatible, keeping the native structural features of the system at hand, while condensing into an amorphous, glass-like...
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Celebrating 50 years of SWIMs (Salt Water Intrusion Meetings)
PublicationThe Salt Water Intrusion Meetings, or SWIMs, are a series of meetings that focus on seawater intrusion in coastal aquifers and other salinisation processes. 2018 marks the 50th year of the SWIM and the 25th biennial meeting. The SWIM proceedings record half a century of research progress on site characterisation, geophysical and geochemical techniques, variable-density flow, modelling, and water management. The SWIM is positioning...
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Buried Object Characterization by Data-Driven Surrogates and Regression-Enabled Hyperbolic Signature Extraction
PublicationThis work addresses artificial-intelligence-based buried object characterization using FDTD-based electromagnetic simulation toolbox of a Ground Penetrating Radar (GPR) to generate B-scan data. In data collection, FDTD-based simulation tool, gprMax is used. The task is to estimate geophysical parameters of a cylindrical shape object of various radii, buried at different positions in the dry soil medium simultaneously and independently...
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Opportunities and shortcomings of ionic liquids in single-drop microextraction
PublicationThe synergistic combination of ionic liquids (ILs) and single-drop microextraction (SDME) involves a powerful coupling toward the development of sustainable analytical methodologies. This overview provides a survey of the literature regarding the IL-SDME, including a database on relevant physicochemical properties of ILs for their application in SDME, the strategies implemented to combine IL-based SDME methods efficiently with...
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An insight into craft activities in rural areas of Dalmatia province - first data on iron working at the Roman settlement in Lopar (Island of Rab)
PublicationWithin multidisciplinary research carried out at Podšilo bay in Lopar on the island of Rab (north-eastern Adriatic), on the bases of movable finds and, possibly, geophysical measurements, evidence of ironworking has been detected within a Roman rural site where ceramic building materials production was ascertained before. Preliminary analyses of several samples of slug, iron objects and nearby collected minerals support the...
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Design of versatile ASIC and protocol tester for CBM readout system
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Conceptual design report of the MPD Cosmic Ray Detector (MCORD)
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Development of a digital method for neutron/gamma-ray discrimination based on matched filtering
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GBTX emulator for development and special versions of GBT-based readout chains
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Performance and operation of the CMS electromagnetic calorimeter
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Precise mapping of the magnetic field in the CMS barrel yoke using cosmic rays
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Performance of the CMS hadron calorimeter with cosmic ray muons and LHC beam data
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Performance of CMS muon reconstruction in cosmic-ray events
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CMS data processing workflows during an extended cosmic ray run
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Identification and filtering of uncharacteristic noise in the CMS hadron calorimeter
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Commissioning of the CMS experiment and the cosmic run at four tesla
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Alignment of the CMS silicon tracker during commissioning with cosmic rays
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Performance of the CMS drift-tube chamber local trigger with cosmic rays
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Time reconstruction and performance of the CMS electromagnetic calorimeter
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Performance of the CMS cathode strip chambers with cosmic rays
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Calibration of the CMS drift tube chambers and measurement of the drift velocity with cosmic rays
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The CMS experiment at the CERN LHC
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Measurement of the muon stopping power in lead tungstate
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Performance study of the CMS barrel resistive plate chambers with cosmic rays
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Alignment of the CMS muon system with cosmic-ray and beam-halo muons
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Aligning the CMS muon chambers with the muon alignment system during an extended cosmic ray run
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Performance of CMS hadron calorimeter timing and synchronization using test beam, cosmic ray, and LHC beam data
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Commissioning and performance of the CMS silicon strip tracker with cosmic ray muons
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Performance of the CMS drift tube chambers with cosmic rays
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Commissioning of the CMS High-Level Trigger with cosmic rays
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Fine synchronization of the CMS muon drift-tube local trigger using cosmic rays
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Performance of the CMS Level-1 trigger during commissioning with cosmic ray muons and LHC beams
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Commissioning and performance of the CMS pixel tracker with cosmic ray muons
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Versatile prototyping platform for Data Processing Boards for CBM experiment
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Light yield non-proportionality of undoped YAP scintillator
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Multimodal analysis of traction forces and the temperature dynamics of living cells with a diamond-embedded substrate
PublicationCells and tissues are constantly exposed to chemical and physical signals that regulate physiological and pathological processes. This study explores the integration of two biophysical methods: traction force microscopy (TFM) and optically detected magnetic resonance (ODMR) to concurrently assess cellular traction forces and the local relative temperature. We present a novel elastic substrate with embedded nitrogen-vacancy microdiamonds...
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Monitoring of underdeck corrosion by using acoustic emission method
PublicationThis paper presents first short characteristics of underdeck corrosion process as well as a problem of its monitoring. Next is described an acoustic emission (AE) method elaborated by Department of Ship Technology , Quality Systems and Material Engineering, Gdańsk University of Technology in cooperation with partners of CORFAT project realized within 7th EU Frame Program . Further are presented short characteristics of the emission...
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Fluctuation-Enhanced Sensing (FES): A Promising Sensing Technique
PublicationFluctuation-enhanced sensing (FES) is a very powerful odor and gas sensing technique and as such it can play a fundamental role in the control of environments and, therefore, in the protection of health. For this reason, we conduct a comprehensive survey on the state-of-the-art of the FES technique, highlighting potentials and limits. Particular attention is paid to the dedicated instrumentation necessary for the application of...
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Comparison of direct and inverse methods of satellite observations downscaling for the coastal zone area
PublicationThe Earth observation satellite imaging systems have known limitations, especially regarding their spatial and temporal resolution. Therefore, approaches which aim to combine data retrieved from sensors of higher temporal and lower spatial resolution with the data characterized by lower temporal but higher spatial resolution are of high interest. This allows for joint utilization of the advantages of both these types of sensors....
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Mapping the Structural and Dynamic Determinants of pH-Sensitive Heparin Binding to Granulocyte Macrophage Colony Stimulating Factor
PublicationGranulocyte macrophage colony stimulating factor (GMCSF) is an immunomodulatory cytokine that is harnessed as a therapeutic. GMCSF is known to interact with other clinically important molecules, such as heparin, suggesting that endogenous and administered GMCSF has the potential to modulate orthogonal treatment outcomes. Thus, molecular level characterization of GMCSF and its interactions with biologically active compounds is critical...
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1,4-DHP-lipid parameters and rod like micellae
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Molecular dynamics and verisimilitude - to what extent can one trust a computational simulation?
PublicationFor the last several tens of years, computer simulations have become of undeniable importance. Molecular Dynamics (MD) simulation techniques are used to examine the phenomena which occur at the level that cannot be observed directly. Thus, they can be successfully exploited in many different scientific fields such as: materials science, applied mathematics and theoretical physics, biochemistry, biophysics or drug design. Despite...
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Binary Mixtures of Selected Bisphenols in the Environment: Their Toxicity in Relationship to Individual Constituents
PublicationBisphenol A (BPA) is one of the most popular and commonly used plasticizer in the industry. Over the past decade, new chemicals that belong to the bisphenol group have increasingly been used in industrial applications as alternatives to BPA. Nevertheless, information on the combined effects of bisphenol (BP) analogues is insufficient. Therefore, our current study aimed to find the biological response modulations induced by the...
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Ionosphere variability I: Advances in observational, monitoring and detection capabilities
PublicationThe paper aims to review recent advances regarding the observational and monitoring capabilities of the ionization conditions in the Earth's upper atmosphere. The analysis spans both ground and space-based experiments, seeking for new installations and/or missions, new or upgraded instrumentation and/or observational network establishments as means for advancing current understanding and prediction ability of the ionosphere variability....
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Fiber optic low-coherence Fabry-Pérot interferometer with ZnO layers in transmission and reflective mode: comparative study
PublicationA construction of a low-coherence fiber-optic Fabry-Pérot interferometer using a thin ZnO layer as a reflective surfaces was proposed and examined. In the investigated setup, the ZnO layer of thickness 200 nm were deposited on the face of the standard telecommunication single-mode optical fiber (SMF-28). Measurements of interference signal were performed for the interferometer working in the transmission and reflective mode, as...
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Continuous‐Frequency Method of Measurement of Electrode Impedance
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Two-phase flow structure assessment based on dynamic image analysis
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Continuous frequency method of measurement of electrode impedance.
PublicationPrzedstawione zostały matematyczne podstawy nowej metody pomiaru impedancji elektrodowej. Metoda wykorzystuje sygnał pobudzenia którego częstotliwość zmienia się liniowo w czasie. Amplituda sinusoidalnego niestacjonarnego pobudzenia jest stała. Zapis i analiza sygnału pobudzenia i odpowiedzi pozwalana wyznaczenie ciągłego widma impedancyjnego. Jednoczesna analiza czasowo częstotliwościowa wykonano została przy użyciu transformacji...
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Harmonic analysis of the current of an electric system simulating the electrode process in conditions of linearly changing potential
PublicationAnalizowany był prąd elektrycznego modelu symulującego pierwszorzędową reakcję elektrodową zachodzącą w warunkach liniowo zmieniającego się potencjału z nałożonym sygnałem sinusoidalnym. Pokazano, że transformacja Fouriera nie odzwierciedla zmian amplitudy składowych komponentów w funkcji potencjału. Także matematycznie wykazano, że zastosowanie transformacji Gabora do analizy spektralnej pozwala uzyskać poprawną dekompozycję częstotliwościową....