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Search results for: dna sequence recognition
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Oxidative stress in humans: validation of biomarkers of DNA damage
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An introduction to DNA chips: principles, technology, applications and analysis.
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Decisional DNA Based Conceptual Framework for Smart Manufacturing
PublicationThis paper presents the conceptual framework for systematic knowledge representation, storage and reuse of manufacturing information in a production scenario. This knowledge structure is designed for three levels in a manufacturing set up viz. first at the engineering objects level, second at process and finally at factory level. Virtual engineering object (VEO) deals with knowledge at the individual object/component/machine level...
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5-Bromo-2′-deoxycytidine—a potential DNA photosensitizer
PublicationA double-stranded oligonucleotide, 80 base pairs in length, was multiply labeled with 5-bromo-2′-deoxycytidine (BrdC) using polymerase chain reaction (PCR). The modified oligonucleotide was irradiated with 300 nm photons and its damage was assayed by employing DHPLC, LC-MS and denaturing polyacrylamide gel electrophoresis (PAGE). Two types of damage were demonstrated, namely, single strand breaks (SSBs) and intrastrand cross-links...
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B35 The Significance The Level Of Mitochondrial Dna In Huntington's Disease
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Sequences of large subunit ribosomal RNA gene, partial sequence encoding D1/D2 domain of psychrotolerant pigment-producing yeast-like fungi
Open Research DataDNA fragments encoding D1/D2 domain of large subunit ribosomal RNA of psychrotolerant pigment-producing yeast-like fungi named Red, Pink and Black were PCR amplified using NL1 5’ GCATATCAATAAGCGGAGGAAAAG 3’ and NL4 5’ GGTCCGTGTTTCAAGACGG 3’ primers and sequenced by Sanger method using the same primers.
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Application of Syntactic Pattern Recognition Approach in Design and Optimisation of Group Machining Systems
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Brain-Inspired Deep Networks for Facial Expression Recognition. Frontiers in Biomedical Technologies
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Fluorescent Molecular Cages with Sucrose and Cyclotriveratrylene Units for the Selective Recognition of Choline and Acetylcholine
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Anion recognition by phosphonium calix[4]arens: synthesis and physico-chemical studies
Publicationp-tert-butylcalix[4]arenes in the cone conformation, di-and tetra substituted at the narrow rim with charged phosphonium groups have been synthesies and characterised.
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Structural determinants of imidazoacridinones facilitating antitumor activity are crucial for substrate recognition by ABCG2
PublicationW pracy zidentyfikowaliśmy elementy struktury chemicznej dla 23 pochodnych imidazoakrydonu odpowiedzialne za ich rozpoznawanie przez transporter typu ABC, białko ABCG2. za transport tych związków przez pompę ABCG2 odpowiedzialne jest grupa hydroksylowa w pozycjach R1, R2 i R3 chromoforu. Stwierdziliśmy także, że zwiększanie ilości grup metylenowych łańcucha bocznego imidazoakrydonów powodowało zmniejszenie aktywnego transportu...
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Application of Syntactic Pattern Recognition Approach in Design and Optimisation of Group Machining Systems
PublicationRozwinięto koncepcję budowy zoptymalizowanych struktur systemów wytwarzania grupowego spektrum części z wykorzystaniem modelu analizy syntaktycznej sekwencji operacji ich procesów technologicznych. Określono formułę metryki odległościowej opisu stopnia zróżnicowania marszrut indywidualnych procesów oraz testowano jej skuteczność w aspekcie eksploracji wielowymiarowych danych i klasteryzacji obiektów wg cech wymagań technologicznych....
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Combining visual and acoustic modalities to ease speech recognition by hearing impaired people
PublicationArtykuł prezentuje system, którego celem działania jest ułatwienie procesu treningu poprawnej wymowy dla osób z poważnymi wadami słuchu. W analizie mowy wykorzystane zostały parametry akutyczne i wizualne. Do wyznaczenia parametrów wizualnych na podstawie kształtu i ruchu ust zostały wykorzystane modele Active Shape Models. Parametry akustyczne bazują na współczynnikach melcepstralnych. Do klasyfikacji wypowiadanych głosek została...
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Enantiomeric self-recognition of a facial amphiphile triggered by [{Pd(ONO2)(en)}2]
PublicationOpisano syntezę pochodnych glikolurylu tworzących dimeryczne struktury w roztworze wodnym prowadzące do samorozpoznania enancjomerycznego. Struktury te uzyskano dzięki koordynacji do [{Pd(ONO2)(en)}2].
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Ontological Model for Contextual Data Defining Time Series for Emotion Recognition and Analysis
PublicationOne of the major challenges facing the field of Affective Computing is the reusability of datasets. Existing affective-related datasets are not consistent with each other, they store a variety of information in different forms, different formats, and the terms used to describe them are not unified. This paper proposes a new ontology, ROAD, as a solution to this problem, by formally describing the datasets and unifying the terms...
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A Concept of Automatic Film Color Grading Based on Music Recognition and Evoked Emotions
PublicationThe article presents the aspects of the final selection of the color of shots in film production based on the psychology of color. First of all, the elements of color processing, contrast, saturation or white balance in the film shots were presented and the definition of color grading was given. In the second part of the article the analysis of film music was conducted in the context of stimulating appropriate emotions while watching...
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Replicating DNA by cell factories: roles of central carbon metabolism and transcription in the control of DNA replication in microbes, and implications for understanding this process in human cells
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Viral infection-oxidative stress/DNA damage-aberrant DNA methylation: separate or interrelated events responsible for genetic instability and childhood ALL development?
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From DNA damage to G2 arrest: the many roles of topoisomerase II. W: Prog-ress in Cell Cycle Research. Ed. Meijer L., Jezequel A., Roberge M. London: Plenum Publ. Comp. Ltd**2003 vol. 5 chapt. 30 s. 295-300 Od uszkodzeń DNA do bloku w G2: wiele ról dla topoizomerazy II.
PublicationInhibitory DNA topoizomerazy II sa jednymi z najbardziej szeroko stosowanymi lekami przeciwnowotworowymi. Związki te indukuja pekniecia nici DNA i bloku progresji cyklu komorkowego w fazie G2. Jednak topoizomeraza II jest nie tylko celem molekularnym dla lekow przeciwnowtworowych ale enzym ten pelniwazna role w odpowiedzi komorkowej na dzialanie wielu lekow uszkadzajacych DNA. Topoizomeraza tworzy kompleksy molekularne z bialkami...
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Inhibitory activity of double‐sequence analogues of trypsin inhibitor SFTI‐1 from sunflower seeds: an example of peptide splicing
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Release systems based on self-assembling RADA16-I hydrogels with a signal sequence which improves wound healing processes
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Characterization of single-stranded DNA-binding proteins from the psychrophilic bacteria Desulfotalea psychrophila, Flavobacterium psychrophilum, Psychrobacter arcticus, Psychrobacter cryohalolentis, Psychromonas ingrahamii, Psychroflexus torquis, and Photobacterium profundum
PublicationBackground: Single-stranded DNA-binding proteins (SSBs) play essential roles in DNA replication, recombination and repair in Bacteria, Archaea and Eukarya. In recent years, there has been an increasing interest in SSBs, since they find numerous applications in diverse molecular biology and analytical methods. Results: We report the characterization of single-stranded DNA-binding proteins from the psychrophilic bacteria Desulfotalea...
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The preparation and evaluation of core-shell magnetic dummy-template molecularly imprinted polymers for preliminary recognition of the low-mass polybrominated diphenyl ethers from aqueous solutions
PublicationThe design, preparation process, binding abilities, morphological characteristic and prospective field of application of dummy-template magnetic molecularly imprinted polymer (DMMIP) for preliminary recognition of the selected low-mass polybrominated diphenyl ethers (PBDE-47 and PBDE-99) from aquatic environment were investigated. The surface of iron oxide (Fe3O4) nanopowder (50-100 nm particles size) was modified with tetraethoxysilane...
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Exploring novel Cd(ii) complexes with 5-methyl-4-imidazolecarboxaldehyde: synthesis, structure, computational insights, and affinity to DNA through switchSense methodology
PublicationA series of four Cd(II) complexes with 5-methyl-4-imidazolecarboxaldehyde (L) with different inorganic anions within or outside the coordination sphere of general formula: [CdCl2 L2 ] (1), [CdBr2 L 2] (2), [CdI2L 2] (3), and [CdL4 ](PF6 )2 ·3H2 O (4) was synthesized through one-step and two-step reactions, respectively. All complexes were obtained as colorless crystals without the need for recrystallization and exhibited solubi- lity...
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Gaussian Mixture Decomposition of Time-Course DNA Microarray Data
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Identification of Mitochondrial DNA (NUMTs) in the Nuclear Genome of Daphnia magna
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Spectroscopy and Dynamics of Cryptolepine in the Nanocavity of Cucurbit[7]uril and DNA
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Optimising DNA binding to carbon nanotubes by non-covalent methods
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Oxidatively Damaged DNA/Oxidative Stress in Children with Celiac Disease
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Effects of basal level of antioxidants on oxidative DNA damage in humans
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Syntheses and DNA binding of new cationic porphyrin–tetrapeptide conjugates
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Analysis of 5-Methylcytosine in DNA of Breast and Colon Cancer Tissues
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Global DNA demethylation as an epigenetic marker of human brain metastases
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Oxidative DNA Damage in Blood of CVD Patients Taking Detralex
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Evolutionary algorithm and decisional DNA for multiple travelling salesman problem
PublicationIn the real world, it is common to face optimization problems that have two or more objectives that must be optimized at the same time, that are typically explained in different units, and are in conflict with one another. This paper presents a hybrid structure that combines set of experience knowledge structures (SOEKS) and evolutionary algorithms, NSGA-II (Non-dominated Sorting Genetic Algorithm II), to solve multiple optimization...
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Intercalation of imidazoacridinones to DNA and its relevance to cytotoxicand antitumor activity
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Towards a software platform for experience administration: Decisional DNA Manager
PublicationW pracy przedstawiono koncepcje dochodzenia do konstrukcji platformy wspomagajacej procesy zarzadzania dosswiadczeniem decyzyjnym.
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Evaluating experimental molecular physics studies of radiation damage in DNA*
PublicationThe field of Atomic and Molecular Physics (AMP) is a mature field exploring the spectroscopy, excitation, ionisation of atoms and molecules in all three phases. Understanding of the spectroscopy and collisional dynamics of AMP has been fundamental to the development and application of quantum mechanics and is applied across a broad range of disparate disciplines including atmospheric sciences, astrochemistry, combustion and environmental...
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Mitochondrial DNA levels in Huntington disease leukocytes and dermal fibroblasts
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B13 Can Dna Methylation Be A Factor In The Pathogenesis Of Huntington's Disease?
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Modelling charge transfer processes in C2+ -tetrahydrofuran collision for ion-induced radiation damage in DNA building blocks
PublicationInvestigations of collision-induced processes involving carbon ions and molecules of biological interest in particular DNA building blocks, are crucial to model the effect of radiation on cells in order to improve medical treatments for cancer therapy. Using carbon ions appears to be one of the most efficient ways to increase biological effectiveness to damage cancerous cells by irradiating deep-seated tumors. Therefore, interest...
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Calix[4]Arenes Appended with Thioamide Moieties as Powerful Tool for Heavy Metals Recognition
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A cortex-like model for animal recognition based on texture using feature-selective hashing
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Calix[4]arenes appended with thioamide moieties as powerful tool for heavy metals recognition
PublicationSelectivity of new thioamide derivatives was assessed using those ligands as sensor materials in ion-selective membrane electrodes and tested towards Pb2+ - selectivity. The influence of the nature of the thioamide function (linear, branched or cyclic substituents) on their ionophoric properties was investigated. Electrodes based on cyclic thioamide moieties are promising analytical tools for monitoring Pb2+ concentration in natural...
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Structure recognition in MD-simulated materials: a case study of boroxyl rings in borate glasses
PublicationZanalizowano statystyczne właściwości geometryczne losowo deformowanej jednostki strukturalnej AC_3, gdzie trzy kationyC znajdują się w wierzchołkach trójkąta równobocznego, a anionA - w jego środku. W szczególności opisano rozkłady kątów AAA,ACA i CAA oraz dwóch estymatorów kształtu w funkcji amplitudydeformacji trójkąta. Wyniki analizy stochastycznej zastosowanodo ilościowej oceny stopnia nieuporządkowania w szkle B_2O_3,symulowanym...
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Gas mixtures recognition using an array of amperometric gas sensors with drifting or faulty sensors
PublicationIn this study, the possibility of using selected methods for diagnostics of performance of matrix composed with six amperometric electrochemical gas sensors is investigated. Measurements of sensor responses in selected concentrations of single toxic gases or gas mixtures were performed and were repeated over time to show sensor drift. Additionally, the studies on the sensors’ drift were performed. The drift has been recognized...
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Effects of metallic silver island films on resonance energy transfer between N,N´-(dipropyl)-tetramethylindocarbocyanine (Cy3)- and N,N´-(dipro- pyl)-tetramethylindodicarbocyanine ( Cy5 )-labeled DNA.
PublicationZbadano nową metodę zwiększania odległości rezonansowego przekazywania energii poprzez umieszczanie znakowanych donorami i akceptorami oligomerów DNA pomiędzy dwoma płytkami pokrytymi nanocząsteczkami metalicznego srebra.
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Selected symmetrically substituted carbazoles: Investigation of anticancer activity and mechanisms of action at the cellular and molecular levels
PublicationDNA topoisomerases play a critical role as essential enzymes in controlling alterations in the topology of DNA. They achieve this by orchestrating the coordinated process of breaking and rejoining DNA strands, which is crucial for maintaining the proper structure of DNA during regular cellular development. The search for and development of new potential anticancer drugs is a challenging yet immensely important area of research...
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Efficiency of new method of removing noisy background from the sequence of MRI scans depending on structure elements used to morphological processing
PublicationPrzedstawiono nową metodę usuwania zaszumionego tła z sekwencji skanów MRI. Każdy skan zawiera przekrój mózgu i tło, oba zaszumione. Tło należy wykluczyć z dalszej analizy. Eliminacji tła dokonano dzięki zastosowaniu opisanego algorytmu wykorzystującego podstawowe operacje morfologiczne: dylację, erozję, otwarcie i zamknięcie do uprzednio zbinaryzowanych zbiorów MRI. Zaprezentowano wyniki przetwarzania otrzymane dla różnych kształtów...
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Complete Nucleotide Sequence of the pCTX-M3 Plasmid and Its Involvement in Spread of the Extended-Spectrum β-Lactamase GeneblaCTX-M-3
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