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Search results for: WORKFLOW
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Integration of Services into Workflow Applications
PublicationDescribing state-of-the-art solutions in distributed system architectures, Integration of Services into Workflow Applications presents a concise approach to the integration of loosely coupled services into workflow applications. It discusses key challenges related to the integration of distributed systems and proposes solutions, both in terms of theoretical aspects such as models and workflow scheduling algorithms, and technical...
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Workflow centered experiemce mangement
PublicationZaproponowano sposób wykrywania modelowania i zapamiętywania doświadczeń decyzyjnych w firmie aplikującej system WORKFLOW
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Workflow application for detection of unwanted events
PublicationZaprezentowano rozproszoną aplikację do wykrywania potencjalnie niebezpiecznych zdarzeń z wejściowych strumieni wideo. Rozpoznanie niepożądanych zdarzeń wywołuje alarmy i wysyła powiadomienia do odpowiednich służb, jak również powoduje zarejestrowanie filmu. Model aplikacji składa się z węzłów z kamerami, pobierajacych strumienie danych, przetwarzajacych dane, wysyłajacych powiadomienia i zapisujacych dane. Zaimplementowana aplikacja...
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Workflow applications in GridLab and PROGRESS projects
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Evaluation of Workflow Runtime Platforms in Service Composition
PublicationTypically, workflow applications are constructed from basic functionalities that may be realized by alternative services deployed in heterogeneous runtime platforms. Depending on workflow structure and selection of services, the applications differ in attributes such as price, Quality of Service (QoS) and others. In the paper, we propose a method of evaluation of workflow runtime platforms using Data Envelopment Analysis. We present...
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Knowledge management - decision support in a workflow system
PublicationPrzedstawiono nowatorski model zarzadzania wiedza w procesach decyzyjnych w systemie opartym na przeplywie ''workflow''.
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Workflow patterns applicable to virtual knowledge-based organizations
PublicationWorkflow is a term specifying how to automate a business process, in whole or part during which documents, information or tasks are passed from one participant to another for action, according to a set of procedural rules. Workflow is therefore directly applicable in virtual knowledge-based organizations, where information is exchanged via electronic documents. In the literature, is presented a complete list of workflow control-flow...
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Dynamic Compatibility Matching of Services for Distributed Workflow Execution
PublicationThe paper presents a concept and an implementation of dynamic learn-ing of compatibilities of services used in a workflow application. While services may have the same functionality, they may accept input and produce output in different formats. The proposed solution learns matching of outputs and inputs at runtime and uses this knowledge in subsequent runs of workflow applications. The presented solution was implemented in an...
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Geodesy measurement techniques as an enrichment of archaeological research workflow
PublicationUse of geodesy techniques is widespread in different fields of science. Especially in such an emerging and dynamic branch of science as archaeology. Warsaw Institute of Archaeology, conducts many archaeological expeditions, among the others Polish-Georgian archaeological expedition in Gonio, where ancient Roman Bath has been discovered and excavated. Gonio is located in Adjara, Georgia, placed on the Black Sea coast. Fortress...
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A concept of a decision function discovery method in a workflow system
PublicationW pracy przedstawiono koncepcyjny model wykrywania zalezności funkcynnych pomiedzy elementami systemu przepływu pracy.
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Baza doświadczeń w oparciu o system klasy workflow
PublicationW pracy przedstawiono koncepcję bazy wiedzy opartej na doświadczeniach gromadzonych w systemie zarządzania zwanym WORKFLOW.
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Zarządzanie wiedzą-podejmowanie decyzji w systemie klasy 'workflow'
PublicationOmowiono propblemy zarzadzania wiedza oraz zaproponowano model wspomagania tym zarzadzaniem w systemach opratych na przeplywach 'workflow'.
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Improving the Workflow for Creation of Textual Versions of Polish Historical Documents
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Integration of cloud-based services into distributed workflow systems: challenges and solutions
PublicationThe paper introduces the challenges in modern workflow management in distributed environments spanning multiplecluster, grid and cloud systems. Recent developments in cloud computing infrastructures are presented and are referring howclouds can be incorporated into distributed workflow management, aside from local and grid systems considered so far. Severalchallenges concerning workflow definition, optimisation and execution are...
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Aplikacje i środowiska kontekstowe: Semantyczny workflow jako usługa złożona
PublicationPrzedstawiono przepływ pracy jako odzwierciedlenie procesu biznesowego oraz orkiestracji usług w ramach usługi złożonej na bazie przykładu procesu obsługi wniosku urlopowego. Zwrócono uwagę na dwupłaszczyznowe spojrzenie - zapisanie usługi jako prostgo workflow oraz przedstwaienie workflow jako usługi. Opisano potrzebę wykorzystania adnotacji semantycznych oraz sam proces kompozycji przepływu dla wytworzenia usługi złożonej. na...
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A Workflow Application for Parallel Processing of Big Data from an Internet Portal
PublicationThe paper presents a workflow application for efficient parallel processing of data downloaded from an Internet portal. The workflow partitions input files into subdirectories which are further split for parallel processing by services installed on distinct computer nodes. This way, analysis of the first ready subdirectories can start fast and is handled by services implemented as parallel multithreaded applications using multiple...
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Beesybees-Agent-Based, Adaptive & Learning Workflow Execution Module for BeesyCluster
PublicationPrezentujemy projekt oraz implementację adaptacyjnego i uczącego się modułu przeznaczonego dowykonywania scenariuszy w środowisku BeesyCluster. BeesyCluster pozwala na modelowaniescenariuszy w formie acyklicznego grafu skierowanego, w którym wierzchołki oznaczają zadania,a krawędzie określają zależności między nimi. Przedstawiamy także kooperatywne wykonaniescenariusza przez grupę agentów zdolnych do zbierania, składowania i korzystania...
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Comparison of selected algorithms for scheduling workflow applications with dynamically changing service availability
PublicationThis paper compares the quality and execution times of several algorithms for scheduling service based workflow applications with changeable service availability and parameters. A workflow is defined as an acyclic directed graph with nodes corresponding to tasks and edges to dependencies between tasks. For each task, one out of several available services needs to be chosen and scheduled to minimize the workflow execution time and...
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Tools, Methods and Services Enhancing the Usage of the Kepler-based Scientific Workflow Framework
PublicationScientific workflow systems are designed to compose and execute either a series of computational or data manipulation steps, or workflows in a scientific application. They are usually a part of a larger eScience environment. The usage of workflow systems, however very beneficial, is mostly not irrelevant for scientists. There are many requirements for additional functionalities around scientific workflows systems that need to be...
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A JEE-based modelling and execution environment for workflow applications with just-in-time service selection
PublicationArtykuł prezentuje model scenariusza z dynamicznym wyborem usług do wykonania zadań scenariusza. Adekwatność rozwiązania została zaprezentowana dla zastosowań naukowych i biznesowych w warunkach kiedy dostępność usług się zmienia i usługi powinny być wybierane w trakcie działania scenariusza a nie przed jego rozpoczęciem. Pokazano, że dla scenariusza naukowego z powtarzalnymi symulacjami, algorytm dobiera usługi, aby zminimalizować...
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Modeling, run-time optimization and execution of distributed workflow applications in the JEE-based BeesyCluster environment
PublicationArtykuł prezentuje kompletne rozwiązanie do modelowania naukowych i biznesowych scenariuszy. statycznego i dynamicznego wyboru usług z uwzględnieniem parametrów jakościowych oraz wykonanie scenariuszy w rzeczywistym środowisku. Scenariusz jest modelowany jako acykliczny graf skierowany, w którym węzły reprezentują zadania zaś krawędzie zależności pomiędzy zadaniami. Warstwa pośrednia BeesyCluster jest wykorzystana do umożliwienia...
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Podstawowe sposoby zwiększania wiarygodności wykonania przebiegów wymagających udziału człowieka w human workflow
PublicationOpisano pojęcie procesu biznesowego oraz przepływu pracy w kontekście automatyzacji mającej na celu optymalizację działań i podniesienie jakości usługi. Przedstawiono charakterystykę procesów pracy angażujących człowieka oraz wykorzystujących dedykowane wzorce przepływów tego typu. Zaproponowano zwiększenie stopnia automatyzacji wykonania procesu wraz z metodami zwiększania wiarygodności wykonania przebiegów pracy przez kontrolę...
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A model, design, and implementation of an efficient multithreaded workflow execution engine with data streaming, caching, and storage constraints
PublicationThe paper proposes a model, design, and implementation of an efficient multithreaded engine for execution of distributed service-based workflows with data streaming defined on a per task basis. The implementation takes into account capacity constraints of the servers on which services are installed and the workflow data footprint if needed. Furthermore, it also considers storage space of the workflow execution engine and its cost....
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BeesyBees: A mobile agent-based middleware for a reliable and secure execution of service-based workflow applications in BeesyCluster
PublicationIntegrating distributed services into workflows comes with its own set of challenges, including security, coordination, fault tolerance and optimisation of execution time. This paper presents an architecture and implementation - nicknamed BeesyBees - that allows distributed execution of workflow applications in BeesyCluster using agents. BeesyCluster is a middleware that allows users to access distributed resources as well as publish...
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Design of a Distributed System using Mobile Devices and Workflow Management for Measurement and Control of a Smart Home and Health
PublicationThe paper presents design of a distributed system for measurements and control of a smart home including temper- atures, light, fire danger, health problems of inhabitants such as increased body temperature, a person falling etc. This is done by integration of mobile devices and standards, distributed service based middleware BeesyCluster and a workflow management system. Mobile devices are used to measure the parameters and are...
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KernelHive: a new workflow-based framework for multilevel high performance computing using clusters and workstations with CPUs and GPUs
PublicationThe paper presents a new open-source framework called KernelHive for multilevel parallelization of computations among various clusters, cluster nodes, and finally, among both CPUs and GPUs for a particular application. An application is modeled as an acyclic directed graph with a possibility to run nodes in parallel and automatic expansion of nodes (called node unrolling) depending on the number of computation units available....
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Parallelization of Compute Intensive Applications into Workflows based on Services in BeesyCluster
PublicationThe paper presents an approach for modeling, optimization and execution of workflow applications based on services that incorporates both service selection and partitioning of input data for parallel processing by parallel workflow paths. A compute-intensive workflow application for parallel integration is presented. An impact of the input data partitioning on the scalability is presented. The paper shows a comparison of the theoretical...
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Integration of compute-intensive tasks into scientific workflows in BeesyCluster
PublicationArtykuł prezentuje szczegóły projektowe i implementacyjne jak również symulacje naukowych scenariuszy z wymagającymi zadaniami na klastrach i komputerach PC. Autor wdrożył wsparcie dla scenariuszy naukowych do wcześniej opracowanego systemu BeesyCluster wdrożonego w Akademickim Centrum Komputerowym sieci TASK w Gdańsku na klastrze holk z 288 procesorami Itanium2. BeesyCluster pozwala użytkownikom na zarządzanie różnymi kontami...
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CMS data processing workflows during an extended cosmic ray run
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Scenariusze przepływu pracy sprzężone z automatyczną akwizycją danych
PublicationPrzedstawiono tematykę inteligentnych przepływów pracy (smart workflow). Przedstawiono aplikacje oparte o inteligentne scenariusz przepływu pracy: sterowanie systemem audio, monitorowanie warunków środowiskowych pomieszczenia i dynamiczną kontekstową listę zadań. Opisano komponentową architekturę systemu. Opisano etapy poszerzające proces projektowania i implementacji. Wskazano na problemy występujące podczas wykonywania tych aplikacji...
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Runtime Visualization of Application Progress and Monitoring of a GPU-enabled Parallel Environment
PublicationThe paper presents design, implementation and real life uses of a visualization subsystem for a distributed framework for parallelization of workflow-based computations among clusters with nodes that feature both CPUs and GPUs. Firstly, the proposed system presents a graphical view of the infrastructure with clusters, nodes and compute devices along with parameters and runtime graphs of load, memory available, fan speeds etc. Secondly,...
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Characteristics of selected Anabaena isolates from CCNP Collection
Open Research DataEN: This dataset includes information about Anabaena strains (cyanobacteria) deposited in the Culture Collection of Northern Poland (CCNP), at the Division of Marine Biotechnology, Institute of Oceanography, University of Gdańsk, Poland. Presented data concern Anabaena strains their (1) isolation and culture conditions, (2) taxonomic position, (3) morphology...
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Characteristics of selected Nodularia spumigena isolates from CCNP Collection
Open Research DataEN: This dataset includes information about Nodularia spumigena strains (Cyanobacteria) deposited in the Culture Collection of Northern Poland (CCNP), at the Division of Marine Biotechnology, Institute of Oceanography, University of Gdańsk, Poland. Presented data concern Nodularia spumigena strains, their (1) isolation and culture conditions, (2) taxonomic...
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Profiling of polar ionogenic metabolites in Polish wines by capillary electrophoresis-mass spectrometry
PublicationThe composition of wine is determined by a complex interaction between environmental factors, genetic factors (i.e., grape varieties), and winemaking practices (including technology and storage). Metabolomics using NMR spec-troscopy, GC-MS, and/or LC-MS has shown to be a useful approach for assessing the origin, authenticity, and quality of various wines. Nonetheless, the use of additional analytical techniques with complementary...
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Bridging challenges of clinical decision support systems with a semantic approach. A case study on breast cancer
PublicationThe integration of Clinical Decision Support Systems (CDSS) in nowadays clinical environments has not been fully achieved yet. Although numerous approaches and technologies have been proposed since 1960, there are still open gaps that need to be bridged. In this work we present advances from the established state of the art, overcoming some of the most notorious reported difficulties in: (i) automating CDSS, (ii) clinical workflow...
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Proposal of a method for effective tasks distribution in the execution of compolex problems
PublicationAn access to a great number of various services allows for decomposition of complex problems into smaller and less complex tasks. Those tasks can be presented in a form of a dependency graph. This paper shows an idea of executing such a problem using cooperating autonomous agents. Main focus of this work is cooperation covering effective tasks distribution among executors. This paper presents an algorithm for dynamic executor selection...
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Numerical Study of the Impinging Jets Formed by an Injector with Different Nozzle Diameters
Open Research DataThe data set contains the simulation files related to the research paper “Numerical Study of the Impinging Jets Formed by an Injector with Different Nozzle Diameters”, https://doi.org/10.4271/2022-01-1080.
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Wiarygodna integracja systemów ESB oraz Web services
PublicationW pracy przedstawiono problem wiarygodnej integracji aplikacji rozproszonych z wykorzystaniem technologii Enterprise Service Bus oraz Web services. Przeprowadzono badania trzech platform integracji serwisów: Sun Open ESB, Windows Workflow Foundation oraz Mule ESB wraz z najbardziej popularnymi serwerami Web services. Badania wykazały, że delkarowane i zaimplementowane możliwości współpracy w platformach integracji różnią się w...
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Zapewnianie wiarygodnosci przetwarzania przy integracji komponentów usług
PublicationPrzedstawiono problematykę Service Oriented Architecture(SOA) oraz nowoczesne metodologie integracji gotowych komponentów programistycznych.Omówiono Service Component Architecture (SCA), Cloud computing, oraz modelowanie procesów biznesowych jako metodologie zbliżone koncepcyjne do SOA. Opisano główne atrybuty wiarygodności i zestawionokonkretne techniki poprawy wiarygodno±ci. Modelowanie procesów biznesowychzaprezentowano na przykładzie...
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APIS – Agent Platform for Integration of Services
PublicationThe paper presents an approach to creating the platform for development and evaluation of complex tasks execution algorithms. Proposed solution is based on an agent paradigm where independent peers can cooperate and negotiate in order to execute specified tasks which are defined only by the final output description. Tasks are realized by the means of services exposed by different peers. In case when there is no single service fulfilling...
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Teaching High Performance Computing Using BeesyCluster and Relevant Usage Statistics
PublicationThe paper presents motivations and experiences from using the BeesyCluster middleware for teaching high performance computing at the Faculty of Electronics, Telecommunications and Informatics, Gdansk University of Technology. Features of BeesyCluster well suited for conducting courses are discussed including: easy-to-use WWW interface for application development and running hiding queuing systems, publishing applications as services...
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Leveraging spatio-temporal features for joint deblurring and segmentation of instruments in dental video microscopy
PublicationIn dentistry, microscopes have become indispensable optical devices for high-quality treatment and micro-invasive surgery, especially in the field of endodontics. Recent machine vision advances enable more advanced, real-time applications including but not limited to dental video deblurring and workflow analysis through relevant metadata obtained by instrument motion trajectories. To this end, the proposed work addresses dental...
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Molywood: streamlining the design and rendering of molecular movies
PublicationMotivation High-quality dynamic visuals are needed at all levels of science communication, from the conference hall to the classroom. As scientific journals embrace new article formats, many key concepts – particularly in structural biology – are also more easily conveyed as videos than still frames. Notwithstanding, the design and rendering of a complex molecular movie remain an arduous task. Here, we introduce Molywood, a robust...
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Model otwartej architektury rozproszonych dokumentów elektronicznych wspierającej proces podejmowania decyzji w trybie obliczeń zespołowych
PublicationModel otwartej architektury mobilnych dokumentów interaktywnych MIND, został opracowany w celu efektywnego zarządzania informacją w procesach podejmowanych przez organizacje oparte na wiedzy. Architektura ta stanowi całościowy opis struktury i funkcjonalności dokumentu, zaprojektowanego w celu realizacji rozproszonego przetwarzania zespołowego i pracy grupowej. Umożliwia automatyczne przejście od statycznej postaci dokumentów...
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Smart Document-Centric Processing of Human Oriented Information Flows
PublicationUsually people prefer to focus on creative rather than repetitive and schematic work patterns. Still, they must spend a lot of time complying with the procedures, selecting the information they receive and repeatedly restoring the previous state of work. This paper proposes the Mobile INteractive Document architecture (MIND) - a document-centric uniform interface to provide both effective communication of content and coordination...
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Lipidomics of Staphylococcus aureus – a new insight into the antibiotic resistant phenotype
PublicationStaphylococcus aureus is an aggressive pathogen responsible for a variety of diseases, in cluding life-threatening sepsis. Many strains of these bacteria are resistant to multiple classes of antibiotics, which is a substantial clinical problem in the treatment of S. aureus infections. We developed a comprehensive untargeted lipidomic workflow, including sample preparation, liquid chromatography-quadrupole-time-of-flight mass spectrometry...
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Modeling two phase flow in large scale fractured porous media with an extended multiple interacting continua method
PublicationWe present a two phase flow conceptual model, the corresponding simulator (2pMINC) and a workflow for large-scale fractured reservoirs, based on a continuum fracture approach which uses the multiple interacting continua (MINC) method complemented with an improved upscaling technique. The complex transient behavior of the flow processes in fractured porous media is captured by subgridding the coarse blocks in nested volume elements...
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Modification of gradient HPLC method for determination of small molecules' affinity to human serum albumin under column safety conditions: Robustness and chemometrics study
PublicationIn the early stages of drug discovery, beyond the biological activity screening, determining the physicochemical properties that affect the distribution of molecules in the human body is an essential step. Plasma protein binding (PPB) is one of the most important investigated endpoints. Nevertheless, the methodology for measuring %PPB is significantly less popular and standardized than other physicochemical properties, like lipophilicity....
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GIS three-dimensional Modelling with geo-informatics techniques
PublicationThe integration issue of virtual models and geo-referenced database have a very broad spectrum of potential applications. Before the integration issue was on the cusp, it was quite problematic to combine three-dimensional models with the geo-referenced database. An integrated database contains a variety of data including such as object orientated data model and raster data. Within this paper, authors present an integration process...
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Medical Image Dataset Annotation Service (MIDAS)
PublicationMIDAS (Medical Image Dataset Annotation Service) is a custom-tailored tool for creating and managing datasets either for deep learning, as well as machine learning or any form of statistical research. The aim of the project is to provide one-fit-all platform for creating medical image datasets that could easily blend in hospital's workflow. In our work, we focus on the importance of medical data anonimization, discussing the...