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Year 2022
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A coarse‐grained approach to NMR ‐data‐assisted modeling of protein structures
PublicationThe ESCASA algorithm for analytical estimation of proton positions from coarse-grained geometry developed in our recent work has been implemented in modeling protein structures with the highly coarse-grained UNRES model of polypeptide chains (two sites per residue) and nuclear magnetic resonance (NMR) data. A penalty function with the shape of intersecting gorges was applied to treat ambiguous distance restraints, which automatically...
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A Cost-Effective Method for Reconstructing City-Building 3D Models from Sparse Lidar Point Clouds
PublicationThe recent popularization of airborne lidar scanners has provided a steady source of point cloud datasets containing the altitudes of bare earth surface and vegetation features as well as man-made structures. In contrast to terrestrial lidar, which produces dense point clouds of small areas, airborne laser sensors usually deliver sparse datasets that cover large municipalities. The latter are very useful in constructing digital...
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A novel architecture of Web-GIS for mapping and analysis of echinococcosis in Poland
PublicationEchinococcosis is an infectious disease transferred through ingestion of food or water which have been contaminated with eggs of the Echinococcus tapeworm, which are spread by intermediate parasite hosts. Because the latter are primarily territorial, research related to diagnosis and prevention of echinococcosis requires investigation of environmental factors, which can be supported with the use of a Geographical Information System...
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Analiza jakości transmisji treści audio-wideo w symulowanym łączu telekomunikacyjnym z wykorzystaniem techniki OFDM
PublicationWdrożenie niezawodnego systemu komunikacji audio-wideo przynosi wiele korzyści. Z uwagi na fakt, że ilość dostępnego pasma stale się kurczy, badacze koncentrują się na nowatorskich metodach transmisji. Obecnie technika OFDM (Orthogonal Frequency Division Multiplexing) jest szeroko stosowana zarówno w mediach przewodowych, jak i bezprzewodowych. W pracy przedstawiono badania jakości QoS (Quality of Service) symulowanego łącza transmisji...
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Analysis of Video Transmission Capabilities in a Simulated OFDM-Based Supplementary BPL-PLC System
PublicationThe design and maintenance of a reliable communication system, especially in harsh working conditions for the oil and mining industry, brings many challenges. With the use of a video transmission system, one can monitor the crew and their working environment. Broadband over power line–power line communication (BPL-PLC) seems an ideal medium for such a service, since it enables the use of the existing wired infrastructure for supplementary...
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Badanie jakości transmisji w sieciach komórkowych na przestrzeni lat 2019-2021: wpływ pandemii Covid-19 na poziom świadczonych usług
PublicationPandemia COVID-19 znacząco ograniczyła mobilność użytkowników, a w szczególności studentów. Nauka zdalna miała szczególny wpływ na sposób przydziału zasobów w sieciach komórkowych. Niniejsza praca przedstawia wyniki badań dotyczących jakości transmisji w środowisku zewnątrzbudynkowym. Kampanię pomiarową w latach 2019-2021 przeprowadzono na terenie kampusu uczelni technicznej. Każdego roku badania wykonano przy użyciu własnej autorskiej...
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Cellular network quality evaluation at a university campus on the eve of 5G
PublicationThanks to the availability of mobile devices and the spread of broadband access around the world, the number of network users continues to grow. This has raised user awareness when it comes to the quality of content they consume. Many service providers and operators focus on monitoring QoN (Quality of Network) and QoS (Quality of Service) parameters, particularly those influenced by bandwidth and latency. However, for most end-users,...
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Development of an AI-based audiogram classification method for patient referral
PublicationHearing loss is one of the most significant sensory disabilities. It can have various negative effects on a person's quality of life, ranging from impeded school and academic performance to total social isolation in severe cases. It is therefore vital that early symptoms of hearing loss are diagnosed quickly and accurately. Audiology tests are commonly performed with the use of tonal audiometry, which measures a patient's hearing...
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Early Stages of RNA-Mediated Conversion of Human Prions
PublicationPrion diseases are characterized by the conversion of prion proteins from a PrPC fold into a disease-causing PrPSC form that is self-replicating. A possible agent to trigger this conversion is polyadenosine RNA, but both mechanism and pathways of the conversion are poorly understood. Using coarse-grained molecular dynamic simulations we study the time evolution of PrPC over 600 μs. We find that both the D178N mutation and interacting...
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Efficient FPGA Implementation of an RFIR Filter Using the APC–OMS Technique with WTM for High-Throughput Signal Processing
PublicationNowadays, Finite Impulse Response (FIR) filters are used to change the attributes of a signal in the time or frequency domain. Among FIR filters, a reconfigurable filter has the advantage of changing the coefficient in real-time, while performing the operation. In this paper, the Anti-Symmetric Product Coding (APC) and Odd Multiple Storage (OMS) modules are utilized to implement the reconfigurable FIR filter (RFIR–APC–OMS). Herein,...
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Energy Management for PV Powered Hybrid Storage System in Electric Vehicles Using Artificial Neural Network and Aquila Optimizer Algorithm
PublicationIn an electric vehicle (EV), using more than one energy source often provides a safe ride without concerns about range. EVs are powered by photovoltaic (PV), battery, and ultracapacitor (UC) systems. The overall results of this arrangement are an increase in travel distance; a reduction in battery size; improved reaction, especially under overload; and an extension of battery life. Improved results allow the energy to be used efficiently,...
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Engineering and Management of Space Systems (EMSS) - an international joint Master's double-degree program
PublicationDynamic development of the space sector of European, and especially of Polish and German economies results in a necessity for suitable Higher Education Institution graduates. The increasing digitization, distribution and networking of technical systems leads to the necessity of a degree programme teaching “the systems view” and “interdisciplinarity” methods and skills. Furthermore, it is necessary to consider the entire life cycle...
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Feature Weighted Attention-Bidirectional Long Short Term Memory Model for Change Detection in Remote Sensing Images
PublicationIn remote sensing images, change detection (CD) is required in many applications, such as: resource management, urban expansion research, land management, and disaster assessment. Various deep learning-based methods were applied to satellite image analysis for change detection, yet many of them have limitations, including the overfitting problem. This research proposes the Feature Weighted Attention (FWA) in Bidirectional Long...
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Improvements and new functionalities of UNRES server for coarse-grained modeling of protein structure, dynamics, and interactions
PublicationIn this paper we report the improvements and extensions of the UNRES server (https://unres-server.chem.ug.edu.pl) for physics-based simulations with the coarse-grained UNRES model of polypeptide chains. The improvements include the replacement of the old code with the recently optimized one and adding the recent scale-consistent variant of the UNRES force field, which performs better in the modeling of proteins with the β and the...
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Modeling the Structure, Dynamics, and Transformations of Proteins with the UNRES Force Field
PublicationThe physics-based united-residue (UNRES) model of proteins ( www.unres.pl ) has been designed to carry out large-scale simulations of protein folding. The force field has been derived and parameterized based on the principles of statistical-mechanics, which makes it independent of structural databases and applicable to treat nonstandard situations such as, proteins that contain D-amino-acid residues. Powered by Langevin dynamics...
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Nauka w świecie cyfrowym okiem młodego inżyniera - jakość życia a jakość powietrza w miastach
PublicationObecne w powietrzu zanieczyszczenia biorą udział w procesach zmian klimatycznych, a także bezpośrednio wpływają na ludzkie zdrowie, przejawiając toksyczność w wyższych stężeniach oraz zwiększając ryzyko występowania szerokiej gamy chorób. Jest to szczególnie niebezpieczne dla mieszkańców dużych miast oraz tych znajdujących się w grupach ryzyka. Dlatego też bardzo ważna pozostaje kwestia monitorowania stanu zanieczyszczenia powietrza...
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Nauka w świecie cyfrowym okiem młodego inżyniera - początki techniki wirtualnej rzeczywistości
PublicationIstnieje wiele definicji wirtualnej rzeczywistości (VR – Virtual Reality), które mniej lub bardziej pokrywają się ze sobą w różnych obszarach naukowych. Obecnie, gdy używamy określenia „VR”, odnosi się ono konkretnie do obrazów generowanych komputerowo, które zostały specjalnie zaprojektowane tak, aby dostarczyć jak najbardziej immersyjnych wrażeń. Sporo opracowań mówi również, że VR musi być interaktywna. To odróżniałoby ją od...
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Non-Least Square GNSS Positioning Algorithm for Densely Urbanized Areas
PublicationThe paper introduces an essentially new algorithm for calculating the GNSS position as an alternative to the least-square method. The proposed approach can be widely applied to any positioning method that uses multiple position lines for position calculation and is an example ofhow using a numerical solution can improve position accuracy without access to historical data. In essence, the method is based on the adaptation of the...
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On the Role of Polarimetric Decomposition and Speckle Filtering Methods for C-Band SAR Wetland Classification Purposes
PublicationPrevious wetlands studies have thoroughly verified the usefulness of data from synthetic aperture radar (SAR) sensors in various acquisition modes. However, the effect of the processing parameters in wetland classification remains poorly explored. In this study, we investigated the influence of speckle filters and decomposition methods with different combinations of filter and decomposition windows sizes on classification accuracy....
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Performance Analysis of the OpenCL Environment on Mobile Platforms
PublicationToday’s smartphones have more and more features that so far were only assigned to personal computers. Every year these devices are composed of better and more efficient components. Everything indicates that modern smartphones are replacing ordinary computers in various activities. High computing power is required for tasks such as image processing, speech recognition and object detection. This paper analyses the performance of...
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Proof of Concept of Indoor Location System Using Long RFID Readers and Passive Tags
PublicationThe paper proposes a system for persons and objects location with the use of long radio-frequency identifications (RFIDs) readers. In order to investigate all aspects of the proposed location system, several key elements had to be analyzed, including the distance from which the tagged objects and the possibility of using more than one tag within one RFID range at the same time. When designing the system, it is also necessary to...
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Quality Analysis of Audio-Video Transmission in an OFDM-Based Communication System
PublicationApplication of a reliable audio-video communication system, brings many advantages. With the spoken word we can exchange ideas, provide descriptive information, as well as aid to another person. With the availability of visual information one can monitor the surrounding, working environment, etc. As the amount of available bandwidth continues to shrink, researchers focus on novel types of transmission. Currently, orthogonal frequency...
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Quality of Cryptocurrency Mining on Previous Generation NVIDIA GTX GPUs
PublicationCurrently, there is a lot of previous generation NVIDIA GTX graphical processing units (GPUs) available on the market, which were ousted from by next-gen RTX units. Due to this fact, numerous fully-operational devices remain underused, which are available at an affordable price. First, this paper presents an analysis of the cryptocurrency market. Next, in this context, the results of research on the performance of NVIDIA graphics...
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Study on AR Application Efficiency of Selected iOS and Android OS Mobile Devices
PublicationCurrently, the number of scenarios for using AR (Augmented Reality) tools grows every year. Yet, there are still some open performance issues associated with this technology, related with the efficiency of the mobile device itself, including build-in components or the operation system. The purpose of this study was to investigate available augmented reality engines for mobile platforms. First, a review of current graphics and AR...
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Study on VR Application Efficiency of Selected Android OS Mobile Devices
PublicationCurrently, the number of scenarios for using VR (Virtual Reality) technology grows every year. Yet, there are still issues associated with it, related with the performance of the mobile device itself. The aim of this work is to perform an analysis of the effectiveness of virtual reality applications in case of mobile platforms. We put the main emphasis on examining the performance and efficiency of four different hardware and software...
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Subiektywny pomiar jakości programów radiowych strumieniowanych w sieci metodą crowdsourcingu
PublicationObecnie słuchacze mają dostęp do swoich ulubionych programów i audycji radiowych za pośrednictwem naziemnego standardu analogowego FM (Frequency Modulation) oraz cyfrowego DAB+ (Digital Audio Broadcasting plus). Należy podkreślić, że ten sam materiał nadawany jest jednocześnie w kilku technikach (tzw. simulcast), a znaczna większość rozgłośni udostępnia swoje programy także online. Niniejsza praca przedstawia wyniki badań dotyczących...
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Tool Wear Monitoring Using Improved Dragonfly Optimization Algorithm and Deep Belief Network
PublicationIn recent decades, tool wear monitoring has played a crucial role in the improvement of industrial production quality and efficiency. In the machining process, it is important to predict both tool cost and life, and to reduce the equipment downtime. The conventional methods need enormous quantities of human resources and expert skills to achieve precise tool wear information. To automatically identify the tool wear types, deep...
Year 2023
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A Web-GIS tool for diagnosing spatial orientation of young adults: design and evaluation of Geo-Survey
PublicationSpatial orientation is the effectiveness with which one is able to assess the mutual location of objects relative to a point of reference or a system of coordinates. Traditionally, this ability has been evaluated through field navigation tests, which do not take into account the prevailing influence of free online maps and virtual walks on a person’s interpretation of space. In this context, this study presents a Web-GIS tool designed...
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Audio Content and Crowdsourcing: A Subjective Quality Evaluation of Radio Programs Streamed Online
PublicationRadio broadcasting has been present in our lives for over 100 years. The transmission of speech and music signals accompanies us from an early age. Broadcasts provide the latest information from home and abroad. They also shape musical tastes and allow many artists to share their creativity. Modern distribution involves transmission over a number of terrestrial systems. The most popular are analog FM (Frequency Modulation) and...
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Balanced Spider Monkey Optimization with Bi-LSTM for Sustainable Air Quality Prediction
PublicationA reliable air quality prediction model is required for pollution control, human health monitoring, and sustainability. The existing air quality prediction models lack efficiency due to overfitting in prediction model and local optima trap in feature selection. This study proposes the Balanced Spider Monkey Optimization (BSMO) technique for effective feature selection to overcome the local optima trap and overfitting problems....
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Comparing Apples and Oranges: A Mobile User Experience Study of iOS and Android Consumer Devices
PublicationWith the rapid development of wireless networks and the spread of broadband access around the world, the number of active mobile user devices continues to grow. Each year more and more terminals are released on the market, with the smartphone being the most popular among them. They include low-end, mid-range, and of course high-end devices, with top hardware specifications. They do vary in build quality, utilized type of material,...
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Detecting type of hearing loss with different AI classification methods: a performance review
PublicationHearing is one of the most crucial senses for all humans. It allows people to hear and connect with the environment, the people they can meet and the knowledge they need to live their lives to the fullest. Hearing loss can have a detrimental impact on a person's quality of life in a variety of ways, ranging from fewer educational and job opportunities due to impaired communication to social withdrawal in severe situations. Early...
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Effective Air Quality Prediction Using Reinforced Swarm Optimization and Bi-Directional Gated Recurrent Unit
PublicationIn the present scenario, air quality prediction (AQP) is a complex task due to high variability, volatility, and dynamic nature in space and time of particulates and pollutants. Recently, several nations have had poor air quality due to the high emission of particulate matter (PM2.5) that affects human health conditions, especially in urban areas. In this research, a new optimization-based regression model was implemented for effective...
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HCI-Based Wireless System for Measuring the Concentration of Mining Machinery and Equipment Operators
PublicationMaintaining stable and reliable working conditions is a matter of vital importance for various companies, especially those involving heavy machinery. Due to human exhaustion, as well as unpredicted hazards and dangerous situations, the personnel has to take actions and wisely plan each move. This paper presents a human–computer interaction (HCI)-based system that uses a concentration level measurement function to increase the safety...
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Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment
PublicationWe present the results for CAPRI Round 54, the 5th joint CASP-CAPRI protein assembly prediction challenge. The Round offered 37 targets, including 14 homodimers, 3 homo-trimers, 13 heterodimers including 3 antibody–antigen complexes, and 7 large assemblies. On average 70 CASP and CAPRI predictor groups, including more than 20 automatics servers, submitted models for each target. A total of 21 941 models submitted by these groups...
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Impact of Climate Change on Water Sources and River‐Floodplain Mixing in the Natural Wetland Floodplain of Biebrza River
PublicationThe origins of river and floodplain waters (groundwater, rainfall, and snowmelt) and their extent during overbank flow events strongly impact ecological processes such as denitrification and vegetation development. However, the long-term sensitivity of floodplain water signatures to climate change remains elusive. We examined how the integrated hydrological model HydroGeoSphere and the Hydraulic Mixing-Cell method could help us...
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Intracranial hemorrhage detection in 3D computed tomography images using a bi-directional long short-term memory network-based modified genetic algorithm
PublicationIntroduction: Intracranial hemorrhage detection in 3D Computed Tomography (CT) brain images has gained more attention in the research community. The major issue to deal with the 3D CT brain images is scarce and hard to obtain the labelled data with better recognition results. Methods: To overcome the aforementioned problem, a new model has been implemented in this research manuscript. After acquiring the images from the Radiological...
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Is it possible to create a unified urban greenery management system (UGMS) on a national scale? The concept for EU Member State of Poland
PublicationMotives: Currently developed urban greenery management systems (UGMS) are limited in scope and profiled towards solving particular issues. Moreover, due to the lack of common standards and solutions, UGMS implementation requires considerable financial effort, which is only feasible for wealthy urban centres. There is a need for universal, cost-effective technological solutions which could constitute a common urban green infrastructure...
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Leaf wettability and plant surface water storage for common wetland species of the Biebrza peatlands (northeast Poland)
PublicationWetlands play a crucial role in buffering the effects of climate change. At the same time, they are one of the most endangered ecosystems on the globe. The knowledge of the water cycle and energy exchange is crucial for the practical preservation and exploiting their capabilities. Leaf wettability is an important parameter characterising the plant's ability to retain water on its surface, and is linked to the ecosystems' hydrological...
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Mobile Networks' Analysis in Terms of QoS Performance Assessment
PublicationQuality of service (QoS) assessment is one of the basic processes carried out by mobile network operators (MNOs) and regulators of the telecommunications market. Usually, professional companies carry out measurements for various country areas and use cases (scenarios). In this paper, we show exemplary measurement results carried out in drive tests in the vicinity of the Polish capital by a professional company. The measurement...
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Nauka w świecie cyfrowym okiem młodego inżyniera - ciekawe profesje w branży informatycznej
PublicationUmiejętność organizowania i przetwarzania informacji jest kluczowym elementem w dzisiejszych czasach. Komputery i inne urządzenia elektroniczne są zaprojektowane tak, aby szybko i efektywnie obsługiwać, przetwarzać i prezentować duże ilości informacji. Jednak nie mogą nic zrobić, dopóki ktoś nie powie im, co mają robić. Celem tego artykułu jest przybliżenie młodym adeptom technologii cyfrowych ciekawych zawodów w branży informatycznej.
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Nauka w świecie cyfrowym okiem młodego inżyniera - strumieniowanie muzyki w sieci
PublicationNa początku konsumpcja treści multimedialnych, związanych początkowo z sygnałami audio, była możliwa tylko w sposób stacjonarny. Odtwarzacz muzyczny znajdował się w domu, wraz z niezbędnym nośnikiem fizycznym. Alternatywnym sposobem dla jednostki był udział w występie na żywo w sali koncertowej lub zorganizowanie prywatnego koncertu w domu. Podsumowując, efekty audiowizualne były zarezerwowane tylko dla wąskiego grona odbiorców.
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Nauka w świecie cyfrowym okiem młodego inżyniera - wpływ pandemii na branżę transmisji strumieniowej
PublicationTrwająca pandemia znacznie ograniczyła mobilność użytkowników. Wiele osób zrezygnowało ze swobodnego przemieszczania się z powodów zdrowotnych, osobistych lub innych. Fakt ten dotyczył zwłaszcza studentów, którzy musieli przejść na kształcenie na odległość. Także wiele zawodów powiązanych z technologiami ICT postanowiło skorzystać ze zdalnych mechanizmów wymiany informacji i komunikacji z klientem. Czynniki te z pewnością dały...
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Nauka w świecie cyfrowym okiem młodego inżyniera - zawód streamer
PublicationBezapelacyjnie nowe środki łączności i komunikacji bezprzewodowej oraz mobilne terminale użytkownika zmieniły nie tylko metody dostarczania treści, ale też sposób, w jaki postrzegamy samą informację. Obecnie, dzięki globalnej sieci, ludzie mogą z łatwością konsumować i wymieniać zdigitalizowane dane. Współcześnie większość z nas nie używa już fizycznych dysków do przechowywania plików, robią to za nas platformy chmurowe online.
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Optimization of parallel implementation of UNRES package for coarse‐grained simulations to treat large proteins
PublicationWe report major algorithmic improvements of the UNRES package for physics-based coarse-grained simulations of proteins. These include (i) introduction of interaction lists to optimize computations, (ii) transforming the inertia matrix to a pentadiagonal form to reduce computing and memory requirements, (iii) removing explicit angles and dihedral angles from energy expressions and recoding the most time-consuming energy/force terms...
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Quality Evaluation of Speech Transmission via Two-way BPL-PLC Voice Communication System in an Underground Mine
PublicationIn order to design a stable and reliable voice communication system, it is essential to know how many resources are necessary for conveying quality content. These parameters may include objective quality of service (QoS) metrics, such as: available bandwidth, bit error rate (BER), delay, latency as well as subjective quality of experience (QoE) related to user expectations. QoE is expressed as clarity of speech and the ability...
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Reception of Terrestrial DAB+ and FM Radio with a Mobile Device: A Subjective Quality Evaluation
PublicationNowadays, terrestrial broadcasting enables to receive content anytime and everywhere. People can obtain information both with a portable or desktop receiver, which include pocket-sized devices as well as high-end Hi-Fi equipment, not to mention car audio systems. Numerous manufacturers include FM-compatible chipsets in a variety of user equipment (UE), including mobile phones. However, digital radio signal processing modules, such...
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Routing Method for Interplanetary Satellite Communication in IoT Networks Based on IPv6
PublicationThe matter of interplanetary network (IPN) connection is a complex and sophisticated topic. Space missions are aimed inter alia at studying the outer planets of our solar system. Data transmission itself, as well as receiving data from satellites located on the borders of the solar system, was only possible thanks to the use of powerful deep space network (DSN) receivers, located in various places on the surface of the Earth. In...
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Spectrum Sensing Based on Hybrid Spectrum Handoff in Cognitive Radio Networks
PublicationThe rapid advancement of wireless communication combined with insufficient spectrum exploitation opens the door for the expansion of novel wireless services. Cognitive radio network (CRN) technology makes it possible to periodically access the open spectrum bands, which in turn improves the effectiveness of CRNs. Spectrum sensing (SS), which allows unauthorized users to locate open spectrum bands, plays a fundamental part in CRNs....
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Study of various machine learning approaches for Sentinel-2 derived bathymetry
PublicationIn recent years precise and up-to-date information regarding seabed depth has become more and more important for companies and institutions that operate on coastlines. While direct, in-situ measurements are performed regularly, they are expensive, time-consuming and impractical to be performed in short time intervals. At the same time, an ever-increasing amount of satellite imaging data becomes available. With these images, it...