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Search results for: PARALLEL MPI I/O EXTENSION
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Sensorless predictive control of three-phase parallel active filter
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Power flow in typical series-parallel hybrid filters topologies
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Coil Design for Wireless Power Transfer with Series-Parallel Compensation
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Generation of conformance test suites for parallel and distributed languages and APIS.
PublicationArtykuł zarysowuje nową metodologię systematycznego tworzenia Zestawów Testów Zgodności. Testowanie zgodności ma na celu sprawdzenie, czy implementacja jest zgodna ze swoją specyfikacją, co jest szczególnie ważne w środowiskach równoległych i rozproszonych, gdzie musi ze sobą współpracować wiele różnych pakietów. Autor rozpoczął swoje badania w dziedzinie testowania zgodności dla języka równoległego sterowanego danymi Athapascan,...
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Using GPUs for Parallel Stencil Computations in Relativistic Hydrodynamic Simulation
PublicationThis paper explores the possibilities of using a GPU for complex 3D finite difference computation. We propose a new approach to this topic using surface memory and compare it with 3D stencil computations carried out via shared memory, which is currently considered to be the best approach. The case study was performed for the extensive computation of collisions between heavy nuclei in terms of relativistic hydrodynamics.
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Extension of the Force Matching Method to Anisotropic Coarse-Grained Transferable Force Fields: Application to the Unres Model of Proteins
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Extension of the Unres Package for Physics-Based Coarse-Grained Simulations of Proteins and Protein Complexes to Very Large Systems
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A concept of software extension of 3D low-PRF radar systems to 4D semi-medium-PRF radar systems
PublicationWe present a concept of software modification of three-dimensional (3D) radar systems, designed to work in the low pulse repetition frequency mode, that equips them with the ability to estimate the radial velocity and to properly measure the range of targets that are detected outside the radar’s instrumented range. Despite the fact that the proposed modifications are designed so as to require only minor changes in software, they...
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Investigation of Mechanical and Microstructural Properties of Welded Specimens of AA6061-T6 Alloy with Friction Stir Welding and Parallel Friction Stir Welding Methods
PublicationThe present study investigates the effect of two parameters of process type and tool offset on tensile, microhardness, and microstructure properties of AA6061-T6 aluminum alloy joints. Three methods of Friction Stir Welding (FSW), Advancing Parallel-Friction Stir Welding (AP-FSW), and Retreating Parallel-Friction Stir Welding (RP-FSW) were used. In addition, four modes of 0.5, 1, 1.5, and 2 mm of tool offset were used in two welding...
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Massively parallel linear-scaling Hartree–Fock exchange and hybrid exchange–correlation functionals with plane wave basis set accuracy
PublicationWe extend our linear-scaling approach for the calculation of Hartree–Fock exchange energy using localized in situ optimized orbitals [Dziedzic et al., J. Chem. Phys. 139, 214103 (2013)] to leverage massive parallelism. Our approach has been implemented in the ONETEP (Order-N Electronic Total Energy Package) density functional theory framework, which employs a basis of non-orthogonal generalized Wannier functions (NGWFs) to achieve...
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Performance evaluation of the parallel object tracking algorithm employing the particle filter
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Molecular Diffusion Simulation on ARUZ – Massively-parallel FPGA-based Machine
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Towards Efficient Parallel Image Processing on Cluster Grids Using GIMP.
PublicationZe względu na fakt, iż niewielu użytkowników posiada wiedzę niezbędną do wykorzystania niskopoziomowych bibliotek programowania równoległego w celu przyspieszenia działania programów operujących na obrazach, proponujemy plugin do znanej aplikacji GIMP, który umożliwia potokowe wykonanie szeregu filtrów na obrazach załadowanych przez plugin. Prezentujemy szczegóły implementacyjne, scenariusze testowe i wyniki na klastrach, potencjalnie...
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Scheduling with precedence constraints: mixed graph coloring in series-parallel graphs.
PublicationW pracy rozważono problem kolorowania grafów mieszanych, opisujący zagadnienie szeregowania zadań, w którym zależności czasowe zadań mają charakter częściowego porządku lub wzajemnego wykluczania. Dla przypadku, w którym graf zależności jest szeregowo-równoległy, podano algorytm rozwiązujący problem optymalnie w czasie $O(n^3.376 * log n)$.
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Effective methods for functional confermance testing of parallel and distributed programming libraries.
PublicationRozprawa przedstawia kompletna metodykę tworzenia Zestawów Testów Zgodności dla języków programowania, bibliotek i API, ze szczególnym uwzględnieniem języków i bibliotek programowania równoleglego i rozproszonego. Autor rozpoczął badania w dziedzinie testowania zgodności dla bibliotek programowania równoleglego i rozproszonego, ale Metodyka Kolejnych zawężeń (ang. Consecutive Confinenments Method -CoCoM, stworzona przez Autora,...
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Parallel implementation of the DGF-FDTD method on GPU Using the CUDA technology
PublicationThe discrete Green's function (DGF) formulation of the finite-difference time-domain method (FDTD) is accelerated on a graphics processing unit (GPU) by means of the Compute Unified Device Architecture (CUDA) technology. In the developed implementation of the DGF-FDTD method, a new analytic expression for dyadic DGF derived based on scalar DGF is employed in computations. The DGF-FDTD method on GPU returns solutions that are compatible...
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Structure and function of the Ts2631 endolysin of Thermus scotoductus phage vB_Tsc2631 with unique N-terminal extension used for peptidoglycan binding
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Modeling external carbon addition in combined N-P activated sludge systems with an extension of the IWA Activated Sludge Models
PublicationThe aim of this study was to expand the IWA Activated Sludge Model No. 2d (ASM2d) to account for a newly defined readily biodegradable substrate that can be consumed by polyphosphate accumulating organisms (PAOs) under anoxic and aerobic conditions, but not under anaerobic conditions. The model change was to add a new substrate component and process terms for its use by PAOs and other heterotrophic bacteria under anoxic and aerobic...
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Modeling external carbon addition in combined N-P activated sludge systems with an extension of the IWA Activated Sludge Models
PublicationThe aim of this study was to expand the IWA Activated Sludge Model No. 2d (ASM2d) to account for a newly defined readily biodegradable substrate that can be consumed by polyphosphate accumulating organisms (PAOs) under anoxic and aerobic conditions, but not under anaerobic conditions. The model change was to add a new substrate component and process terms for its use by PAOs and other heterotrophic bacteria under anoxic and aerobic...
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The impact of interactions between polyphenolic antioxidants on the redox-related chemical and biological properties of their mixtures – the extension of food synergy concept.
PublicationThe results of studies indicate that chemopreventive efficiency of isolated phytochemicals is lower than that of polyphenol-rich foods. This discrepancy has been ascribed to the food synergy concept that assumes additive or even synergistic influence of different food ingredients on human health. The results presented in the dissertation made it possible to propose an alternative and innovative explanation of these observations. The...
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Redundantly Actuated 3RRR Parallel Planar Manipulator - Numerical Analyses of its Dynamics Sensitivity on Modifications of its Platform’s Inertia Parameters
PublicationIn the paper, numerical analyses, as well as dynamics of a complex mechanism, are presented. Two objectives are crucial for the paper: inverse dynamic model is needed (dedicated to be use in the model predictive controller); an identification method is searched (some trajectory parameters are controlled, when specific trajectory is tracked under an open-loop model-based control), as selected parameters must be identified for the...
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Parallel in vitro and in silico investigations into anti-inflammatory effects of non-prenylated stilbenoids
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Makespan minimization of multi-slot just-in-time scheduling on single and parallel machines
PublicationArtykuł podejmuje problem szeregowania zadań przy założeniu podziału czasu na sloty jednakowej długości, gdzie każde z zadań ma ustaloną długość oraz czas jego zakończenia, który jest relatywny do końca slotu. Problem znalezienia uszeregowania polega na dokonaniu przydziału zadań do poszczególnych slotów, przy czym w ogólności długość zadania może wymuszać sytuację, w której zadańie jest realizowane nie tylko w slocie, w którym...
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From the Dynamic Lattice Liquid Algorithm to the Dedicated Parallel Computer – mDLL Machine
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Generating reliable conformance test suites for parallel and distributed languages, libraries, and APIs.
PublicationArtykuł nakreśla nową metodykę dla tworzenia Zestawów Testów Zgodności (ZTG) dla języków, bibliotek i API programowania równoległego i rozproszonego. Autor rozpoczął swoje badania w zakresie testowania zgodności dla języka równoległego sterowanego danymi Athapascan, opracował metodykę dla projektowania i analizowania ZTG nazwaną Metodą Kolejnych Zawężeń (ang. Consecutive Confinements Methods - CoCoM), stworzył narzędzie CTS Designer,...
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Optimizing the computation of a parallel 3D finite difference algorithm for graphics processing units
PublicationThis paper explores the possibilities of using a graphics processing unit for complex 3D finite difference computation via MUSTA‐FORCE and WENO algorithms. We propose a novel algorithm based on the new properties of CUDA surface memory optimized for 2D spatial locality and compare it with 3D stencil computations carried out via shared memory, which is currently considered to be the best approach. A case study was performed for...
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Multi-source-supplied parallel hybrid propulsion of the inland passenger ship STA.H. Research work on energy efficiency of a hybrid propulsion system operating in the electric motor drive mode
PublicationIn the Faculty of Ocean Engineering and Ship Technology, Gdansk University of Technology, design has recently been developed of a small inland ship with hybrid propulsion and supply system. The ship will be propelled by a specially designed so called parallel hybrid propulsion system. The work was aimed at carrying out the energy efficiency analysis of a hybrid propulsion system operating in the electric motor drive mode and at...
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Efficient parallel algorithms in global optimization of potential energy functions for peptides, proteins, and crystals
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High power, zero ripples active filtering system with power modules operating in parallel
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ARUZ — Large-scale, massively parallel FPGA-based analyzer of real complex systems
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Long-term safety and efficacy of benralizumab in patients with severe, uncontrolled asthma: 1-year results from the BORA phase 3 extension trial
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Extension of the force-matching method to coarse-grained models with axially symmetric sites to produce transferable force fields: Application to the UNRES model of proteins
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Carbonized Lanthanum-Based Metal-Organic Framework with Parallel Arranged Channels for Azo-Dye Adsorption
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Modelling of First- and Second-order Chemical Reactions on ARUZ – Massively-parallel FPGA-based Machine
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Construction of highly stable parallel two-step Runge-Kutta methods for delay differential equations
PublicationW pracy pokazano, że każda A-stabilna dwukrokowa metoda Rungego-Kutty dla równań różniczkowych zwyczajnych rzędu p1 i rzędu etapowego q=p1 może być uogólniona do P-stabilnej metody dla równań różniczkowych z opóźnieniem zbieżnej jednostajnie z rzędem p=p1.
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Feedline Alterations for Optimization-Based Design of Compact Super-Wideband MIMO Antennas in Parallel Configuration
PublicationThis letter presents a technique for size reduction of wideband multiple-input-multiple-output (MIMO) antennas. Our approach is a two-stage procedure. At the first stage, the antenna structure is modified to improve its impedance matching. This is achieved through incorporation of an n-section tapered feedline, followed by reoptimization of geometry parameters. Reducing the maximum in-band reflection well beyond the acceptance...
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Molecular Characterization of a Novel Lytic Enzyme LysC from Clostridium intestinale URNW and Its Antibacterial Activity Mediated by Positively Charged N-Terminal Extension
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Immediate and late benefits of treating very elderly people with hypertension: results from active treatment extension to Hypertension in the Very Elderly randomised controlled trial
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Mechanism of recognition of parallel G-quadruplexes by DEAH/RHAU helicase DHX36 explored by molecular dynamics simulations
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Taking advantage of the shared explicit cache system based critical sections in the shared memory parallel architectures
PublicationArtykuł prezentuje nową metodę implementacji sekcji krytycznych w równoległych architekturach z pamięcią współdzieloną, takich jak systemy zintegrowane wielowątkowe wieloprocesorowe. Metoda stanowi modyfikację i rozbudowanie metody zwanej Folding, dostępnej w procesorach sieciowych oraz jest w założeniach podobna do techniki zwanej cache-based locking. W porównaniu do dostępnych metod, nowa metoda usuwa problemy skalowalności i...
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Molecular Simulations Using Boltzmann’s Thermally Activated Diffusion - Implementation on ARUZ – Massively-parallel FPGA-based Machine
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Performance evaluation of Unified Memory with prefetching and oversubscription for selected parallel CUDA applications on NVIDIA Pascal and Volta GPUs
PublicationThe paper presents assessment of Unified Memory performance with data prefetching and memory oversubscription. Several versions of code are used with: standard memory management, standard Unified Memory and optimized Unified Memory with programmer-assisted data prefetching. Evaluation of execution times is provided for four applications: Sobel and image rotation filters, stream image processing and computational fluid dynamic simulation,...
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Executing Multiple Simulations in the MERPSYS Environment
PublicationThe chapter investigates the steps necessary to perform a simulation instance in the MERPSYS environment and discusses potential limitations in case when vast numbers of simulations are required. An extended architecture is proposed which includes a JMS-based simulation queue and multiple distributed simulators, overcoming the potential bottlenecks. The chapter introduces also methods for preparing suites of multiple simulations...
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Improved conformational space annealing method to treat β-structure with the UNRES force-field and to enhance scalability of parallel implementation
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Air Pollution Research Based on Spider Web and Parallel Continuous Particulate Monitoring—A Comparison Study Coupled with Identification of Sources
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Protokoły łączności do transmisji strumieni multimedialnych na platformie KASKADA
PublicationPlatforma KASKADA rozumiana jako system przetwarzania strumieni multimedialnych dostarcza szeregu usług wspomagających zapewnienie bezpieczeństwa publicznego oraz ocenę badań medycznych. Wydajność platformy KASKADA w znaczącym stopniu uzależniona jest od efektywności metod komunikacji, w tym wymiany danych multimedialnych, które stanowią podstawę przetwarzania. Celem prowadzonych prac było zaprojektowanie podsystemu komunikacji...
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Grid Implementation of a Parallel Multiobjective Genetic Algorithm for Optimized Allocation of Chlorination Stations in Drinking Water Distribution Systems: Chojnice Case Study
PublicationSolving multiobjective optimization problems requires suitable algorithms to find a satisfactory approximation of a globally optimal Pareto front. Furthermore, it is a computationally demanding task. In this paper, the grid implementation of a distributed multiobjective genetic algorithm is presented. The distributed version of the algorithm is based on the island algorithm with forgetting island elitism used instead of a genetic...
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Multiprocessor implementation of Parallel Multiobjective Genetic Algorithm for Optimized Allocation of Chlorination Stations in Drinking Water Distribution System - a new water quality model approach
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Multiprocessor Implementation of Parallel Multiobjective Genetic Algorithm for Optimized Allocation of Chlorination Stations in Drinking Water Distribution System a New Water Quality Model Approach
PublicationThe Critical Infrastructure Systems (CISs) have received in recent years a considerable attention due to their heavy impact on sustainable development of modern societies. Most CISs may be classied as large scale complex systems of network structure, in uenced by strong interactions form the surrounding environment, internal and external interconnections. The later is a result of inter-CIS dependencies. The control, monitoring...
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Repair Augmentation of Unstable, Complete Vertical Meniscal Tears With Bone Marrow Venting Procedure: A Prospective, Randomized, Double-Blind, Parallel-Group, Placebo-Controlled Study
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