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Search results for: backbone coloring
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Interval vertex-coloring of a graph with forbidden colors
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Interval Vertex-Coloring of a Graph With Forbidden Colors
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Interval edge coloring of a graph with forbidden colors
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New potential functions for greedy independence and coloring
PublicationA potential function $f_G$ of a finite, simple and undirected graph $G=(V,E)$ is an arbitrary function $f_G : V(G) \rightarrow \mathbb{N}_0$ that assigns a nonnegative integer to every vertex of a graph $G$. In this paper we define the iterative process of computing the step potential function $q_G$ such that $q_G(v)\leq d_G(v)$ for all $v\in V(G)$. We use this function in the development of new Caro-Wei-type and Brooks-type...
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Parallel tabu search for graph coloring problem
PublicationTabu search is a simple, yet powerful meta-heuristic based on local search that has been often used to solve combinatorial optimization problems like the graph coloring problem. This paper presents current taxonomy of patallel tabu search algorithms and compares three parallelization techniques applied to Tabucol, a sequential TS algorithm for graph coloring. The experimental results are based on graphs available from the DIMACS...
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Optimal edge-coloring with edge rate constraints
PublicationWe consider the problem of covering the edges of a graph by a sequence of matchings subject to the constraint that each edge e appears in at least a given fraction r(e) of the matchings. Although it can be determined in polynomial time whether such a sequence of matchings exists or not [Grötschel et al., Combinatorica (1981), 169–197], we show that several questions about the length of the sequence are computationally intractable....
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Minimum order of graphs with given coloring parameters
PublicationA complete k-coloring of a graph G=(V,E) is an assignment F: V -> {1,...,k} of colors to the vertices such that no two vertices of the same color are adjacent, and the union of any two color classes contains at least one edge. Three extensively investigated graph invariants related to complete colorings are the minimum and maximum number of colors in a complete coloring (chromatic number χ(G) and achromatic number ψ(G), respectively),...
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Chromatic cost coloring of weighted bipartite graphs
PublicationGiven a graph G and a sequence of color costs C, the Cost Coloring optimization problem consists in finding a coloring of G with the smallest total cost with respect to C. We present an analysis of this problem with respect to weighted bipartite graphs. We specify for which finite sequences of color costs the problem is NP-hard and we present an exact polynomial algorithm for the other finite sequences. These results are then extended...
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Greedy T-colorings of graphs
PublicationTreścią artykułu są pokolorowania kontrastowe wygenerowane przez algorytm zachłanny. Zbadane zostały ich własności, obejmujące liczbę kolororów, rozpiętość i rozpiętość krawędziową.
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Parity vertex colouring of graphs
PublicationA parity path in a vertex colouring of a graph is a path along which each colour is used an even number of times. Let Xp(G) be the least number of colours in a proper vertex colouring of G having no parity path. It is proved that for any graph G we have the following tight bounds X(G) <= Xp(G) <=|V(G)|− a(G)+1, where X(G) and a(G) are the chromatic number and the independence number of G, respectively. The bounds are improved for...
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The complexity of the T-coloring problem for graphs with small degree.
PublicationW pracy ustalono złożoność obliczeniową problemu optymalnego kolorowania grafów o ustalonym stopniu.
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The complexity of the T-coloring problem for graphs with small degree
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Some results on a trading model in a consensus list coloring
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A linear time algorithm for edge coloring of binomial trees
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On the complexity of distributed graph coloring with local minimality constraints
PublicationArtykuł traktuje o zachłannym kolorowaniu grafów w modelu rozproszonym. Omówiono algorytmy rozproszone, dające w wyniku pokolorowanie spełniające warunki dla pokolorowań sekwencyjnych typu S oraz Largest-First (LF). Udowodniono również, że każda rozproszona implementacja algorytmu S wymaga co najmniej Omega(log n / log log n) rund, a algorytmu LF co najmniej Omega (n^{1/2}) rund, gdzie n oznacza liczbę wierzchołków grafu.
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Some results on trading model in a consensus list coloring
PublicationKonsensusowy model kolorowania grafów - uogólnienie kolorowania listowego, został zdefiniowany przez Mahadeva i Robertsa w 2002 jako użyteczne narzędzie teoretyczne w niektórych zagadnieniach bioinformatycznych. Pozostaje on jednak słabo rozpoznany pod względem własności algorytmicznych. Wykazujemy, że problem kolorowania grafów pełnych w tym modelu jest wielomianowy, co można uogólnić na częściowe k-drzewa przy ustalonym ograniczeniu...
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Edge coloring of graphs of signed class 1 and 2
PublicationRecently, Behr (2020) introduced a notion of the chromatic index of signed graphs and proved that for every signed graph (G, σ) it holds that ∆(G) ≤ χ′(G,σ) ≤ ∆(G) + 1, where ∆(G) is the maximum degree of G and χ′ denotes its chromatic index. In general, the chromatic index of (G, σ) depends on both the underlying graph G and the signature σ. In the paper we study graphs G for which χ′(G, σ) does not depend on σ. To this aim we...
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Consecutive colorings of the edges of general graphs
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Colorings of the Strong Product of Circulant Graphs
PublicationGraph coloring is one of the famous problems in graph theory and it has many applications to information theory. In the paper we present colorings of the strong product of several circulant graphs.
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Compact cyclic edge-colorings of graphs
PublicationArtykuł jest poświęcony modelowi zwartego cyklicznego kolorowania krawędzi grafów. Ten wariant kolorowania jest stosowany w modelowaniu uszeregowań w systemach produkcyjnych, w których proces produkcyjny ma charakter cykliczny. W pracy podano konstrukcje grafów, które nie zezwalają na istnienie pokolorowania w rozważanym modelu. Wykazano także kilka własności teoretycznych, takich jak ograniczenia górne na liczbę kolorów w optymalnym...
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A 27/26-approximation algorithm for the chromatic sum coloring of bipartitegraphs
PublicationWe consider the CHROMATIC SUM PROBLEM on bipartite graphs which appears to be much harder than the classical CHROMATIC NUMBER PROBLEM. We prove that the CHROMATIC SUM PROBLEM is NP-complete on planar bipartite graphs with Delta less than or equal to 5, but polynomial on bipartite graphs with Delta less than or equal to 3, for which we construct an O(n(2))-time algorithm. Hence, we tighten the borderline of intractability for this...
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Self-stabilizing algorithms for graph coloring with improved performance guarantees
PublicationW pracy rozważa się rozproszony model obliczeń, w którym struktura systemu jest reprezentowana przez graf bezpośrednich połączeń komunikacyjnych. W tym modelu podajemy nowy samostabilizujący algorytm kolorowania grafów oparty na konstrukcji drzewa spinającego. Zgodnie z naszą wiedzą jest to pierwszy algorytm z gwarantowaną wielomianową liczbą ruchów, który dokładnie koloruje grafy dwudzielne.
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Equitable 4-coloring of cacti and edge-cacti in polynomial time
PublicationRozważono problem wyznaczania sprawiedliwej liczby chromatycznej kaktusów i drzew wielokątowych bez trójkątów i krawędzi wiszących. Podano wielomianowy algorytm wyznaczający pokolorowanie optymalne, oparty na paradygmacie programowania dynamicznego. Tym samym znaleziona została kolejna klasa grafów planarnych, dla której kolorowanie sprawiedliwe jawi się jako zagadnienie obliczeniowo łatwe.
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Interval Edge Coloring of Bipartite Graphs with Small Vertex Degrees
PublicationAn edge coloring of a graph G is called interval edge coloring if for each v ∈ V(G) the set of colors on edges incident to v forms an interval of integers. A graph G is interval colorable if there is an interval coloring of G. For an interval colorable graph G, by the interval chromatic index of G, denoted by χ'_i(G), we mean the smallest number k such that G is interval colorable with k colors. A bipartite graph G is called (α,β)-biregular...
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T-colorings, divisibility and circular chromatic number
PublicationLet T be a T-set, i.e., a finite set of nonnegative integers satisfying 0 ∈ T, and G be a graph. In the paper we study relations between the T-edge spans espT (G) and espd⊙T (G), where d is a positive integer and d ⊙ T = {0 ≤ t ≤ d (max T + 1): d |t ⇒ t/d ∈ T} . We show that espd⊙T (G) = d espT (G) − r, where r, 0 ≤ r ≤ d − 1, is an integer that depends on T and G. Next we focus on the case T = {0} and show that espd⊙{0} (G) =...
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Efficient list cost coloring of vertices and/or edges of bounded cyclicity graphs
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Efficient List Cost Coloring of Vertices and∕or Edges of Some Sparse Graphs
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Equitable Coloring of Graphs. Recent Theoretical Results and New Practical Algorithms
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Tight bounds on the complexity of semi-equitable coloring of cubic and subcubic graphs
PublicationWe consider the complexity of semi-equitable k-coloring, k>3, of the vertices of a cubic or subcubic graph G. In particular, we show that, given a n-vertex subcubic graph G, it is NP-complete to obtain a semi-equitable k-coloring of G whose non-equitable color class is of size s if s>n/3, and it is polynomially solvable if s, n/3.
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Scheduling with precedence constraints: mixed graph coloring in series-parallel graphs.
PublicationW pracy rozważono problem kolorowania grafów mieszanych, opisujący zagadnienie szeregowania zadań, w którym zależności czasowe zadań mają charakter częściowego porządku lub wzajemnego wykluczania. Dla przypadku, w którym graf zależności jest szeregowo-równoległy, podano algorytm rozwiązujący problem optymalnie w czasie $O(n^3.376 * log n)$.
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Computer experiments with a parallel clonal selection algorithm for the graph coloring problem
PublicationArtificial immune systems (AIS) are algorithms that are based on the structure and mechanisms of the vertebrate immune system. Clonal selection is a process that allows lymphocytes to launch a quick response to known pathogens and to adapt to new, previously unencountered ones. This paper presents a parallel island model algorithm based on the clonal selection principles for solving the Graph Coloring Problem. The performance of...
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Efficient list cost coloring of vertices and/or edges of some sparse graphs
PublicationRozważane jest kolorowanie wierzchołków i krawędzi grafów w modelach klasycznym, totalnym i pseudototalnym z uwzględnieniem dodatkowego ograniczenia w postaci list dostępnych kolorów. Proponujemy wielomianowy algorytm oparty na paradygmacie programowania dynamicznego dla grafów o strukturze drzewa. Wynik ten można uogólnić na grafy o liczbie cyklomatycznej ograniczonej z góry przez dowolnie wybraną stała.
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Efficient list cost coloring of vertices and/or edges of bounded cyclicity graphs
PublicationW artykule rozważamy listowo-kosztowe kolorowanie wierzchołków i krawędzi grafu w modelu wierzchołkowym, krawędziowym, totalnym i pseudototalnym. Stosujemy programowanie dynamiczne w celu otrzymania algorytmów wielomianowych dla drzew. Następnie uogólniamy to podejście na dowolne grafy z ograniczonymi liczbami cyklomatycznymi i na ich multikolorowania.
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Sharp bounds for the complexity of semi-equitable coloring of cubic and subcubic graphs
PublicationIn this paper we consider the complexity of semi-equitable k-coloring of the vertices of a cubic or subcubic graph. We show that, given n-vertex subcubic graph G, a semi-equitable k-coloring of G is NP-hard if s >= 7n/20 and polynomially solvable if s <= 7n/21, where s is the size of maximum color class of the coloring.
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Equitable coloring of graphs. Recent theoretical results and new practical algorithms
PublicationIn this paper we survey recent theoretical results concerning conditions for equitable colorability of some graphs and recent theoretical results concerning the complexity of equitable coloring problem. Next, since the general coloring problem is strongly NP-hard, we report on practical experiments with some efficient polynomial-time algorithms for approximate equitable coloring of general graphs.
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A note on polynomial algorithm for cost coloring of bipartite graphs with Δ ≤ 4
PublicationIn the note we consider vertex coloring of a graph in which each color has an associated cost which is incurred each time the color is assigned to a vertex. The cost of coloring is the sum of costs incurred at each vertex. We show that the minimum cost coloring problem for n-vertex bipartite graph of degree ∆≤4 can be solved in O(n^2) time. This extends Jansen’s result [K.Jansen,The optimum cost chromatic partition problem, in:...
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Equitable and semi-equitable coloring of cubic graphs and its application in batch scheduling
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A graph coloring approach to scheduling of multiprocessor tasks on dedicated machines with availability constraints
PublicationWe address a generalization of the classical 1- and 2-processor unit execution time scheduling problem on dedicated machines. In our chromatic model of scheduling machines have non-simultaneous availability times and tasks have arbitrary release times and due dates. Also, the versatility of our approach makes it possible to generalize all known classical criteria of optimality. Under these stipulations we show that the problem...
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Consensus models: Computational complexity aspects in modern approaches to the list coloring problem
PublicationArtykuł poświęcony jest nowym modelom konsensusowego kolorowania grafów. Artykuł zawiera omówienie trzech takich modeli, analizę ich złożoności obliczeniowej oraz wielomianowy algorytm dla częściowych k-drzew, dla tzw. modelu addytywnego.
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Equitable and semi-equitable coloring of cubic graphs and its application in batch scheduling
PublicationIn the paper we consider the problems of equitable and semi-equitable coloring of vertices of cubic graphs. We show that in contrast to the equitable coloring, which is easy, the problem of semi-equitable coloring is NP- complete within a broad spectrum of graph parameters. This affects the complexity of batch scheduling of unit-length jobs with cubic incompatibility graph on three uniform processors to minimize...
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Some results concerning the complexity of restricted colorings of graphs
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A note on compact and compact circular edge-colorings of graphs
PublicationW pracy rozważamy dwa warianty kolorowania krawędzi grafów prostych i ważonych, mianowicie kolorowania zwarte oraz zwarte cyrkularne. Rozważamy relacje pomiędzy nimi. Dowodzimy, że każdy zewnętrznie planarny graf dwudzielny posiada zwarte pokolorowanie krawędziowe oraz, że problem ten dla grafów ogólnych jest NP-zupełny. Podajemy również wielomianowy 1.5-przybliżony algorytm oraz pseudowielomianowy dokładny algorytm zwartego cyrkularnego...
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Improvement of the Treatment of Loop Structures in the UNRES Force Field by Inclusion of Coupling between Backbone- and Side-Chain-Local Conformational States
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Equitable colorings of some variation of corona products of cubic graphs
PublicationThe problem of determining the value of equitable chromatic number for multicoronas of cubic graphs is studied. We provide some polynomially solvable cases of cubical multicoronas and give simple linear time algorithms for equitable coloring of such graphs which use almost optimal number of colors in the remaining cases.
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Formation of Secondary and Supersecondary Structure of Proteins as a Result of Coupling Between Local and Backbone-Electrostatic Interactions: A View Through Cluster-Cumulant Scope
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Physics-Based Potentials for the Coupling between Backbone- and Side-Chain-Local Conformational States in the United Residue (UNRES) Force Field for Protein Simulations
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Parametrization of Backbone−Electrostatic and Multibody Contributions to the UNRES Force Field for Protein-Structure Prediction from Ab Initio Energy Surfaces of Model Systems
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The new concept of product. Cooling band
PublicationThe chapter below presents the innovative solution consist in applying the cooling band to help holding the hot object. The solution was found through substitute inputs analysis and brain storm method. The new product was submitted in Polish Patent Office under the No. W.120905.
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ESCASA : Analytical estimation of atomic coordinates from coarse‐grained geometry for nuclear‐magnetic‐resonance ‐assisted protein structure modeling. I. Backbone and Hβ protons
PublicationA method for the estimation of coordinates of atoms in proteins from coarse-grained geometry by simple analytical formulas (ESCASA), for use in nuclear-magnetic-resonance (NMR) data-assisted coarse-grained simulations of proteins is proposed. In this paper, the formulas for the backbone Hα and amide (HN) protons, and the side-chain Hβ protons, given the Cα-trace, have been derived and parameterized, by using the interproton distances...
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An interval estimator for chlorine monitoring in drinking water distribution systems under uncertain system dynamics, inputs and chlorine concentration measurement errors
PublicationThe design of an interval observer for estimation of unmeasured state variables with application to drinking water distribution systems is described. In particular, the design process of such an observer is considered for estimation of the water quality described by the concentration of free chlorine. The interval observer is derived to produce the robust interval bounds on the estimated water quality state variables. The stability...