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Performance evaluation of Unified Memory with prefetching and oversubscription for selected parallel CUDA applications on NVIDIA Pascal and Volta GPUs
PublikacjaThe paper presents assessment of Unified Memory performance with data prefetching and memory oversubscription. Several versions of code are used with: standard memory management, standard Unified Memory and optimized Unified Memory with programmer-assisted data prefetching. Evaluation of execution times is provided for four applications: Sobel and image rotation filters, stream image processing and computational fluid dynamic simulation,...
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Parallelization of Selected Algorithms on Multi-core CPUs, a Cluster and in a Hybrid CPU+Xeon Phi Environment
PublikacjaIn the paper we present parallel implementations as well as execution times and speed-ups of three different algorithms run in various environments such as on a workstation with multi-core CPUs and a cluster. The parallel codes, implementing the master-slave model in C+MPI, differ in computation to communication ratios. The considered problems include: a genetic algorithm with various ratios of master processing time to communication...
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Recent advances in traffic optimisation: systematic literature review of modern models, methods and algorithms
PublikacjaOver the past few decades, the increasing number of vehicles and imperfect road traffic management have been sources of congestion in cities and reasons for deteriorating health of its inhabitants. With the help of computer simulations, transport engineers optimise and improve the capacity of city streets. However, with an enormous number of possible simulation types, it is difficult to grasp valuable, innovative solutions which...
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Benchmarking Scalability and Security Configuration Impact for A Distributed Sensors-Server IOT Use Case
PublikacjaInternet of Things has been getting more and more attention and found numerous practical applications. Especially important in this context are performance, security and ability to cope with failures. Especially crucial is to find good trade-off between these. In this article we present results of practical tests with multiple clients representing sensors sending notifications to an IoT middleware – DeviceHive. We investigate performance...
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Investigation of Performance and Configuration of a Selected IoT System—Middleware Deployment Benchmarking and Recommendations
PublikacjaNowadays Internet of Things is gaining more and more focus all over the world. As a concept it gives many opportunities for applications for society and it is expected that the number of software services deployed in this area will still grow fast. Especially important in this context are properties connected with deployment such as portability, scalability and balance between software requirements and hardware capabilities. In...
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New user-guided and ckpt-based checkpointing libraries for parallel MPI applications
PublikacjaPraca prezentuje szczególy projektowe i implementacyjne jak również wyniki wydajnościowe dwóch nowych bibliotek checkpointingu opracowanych przez autorów dla równoległych aplikacji MPI. Pierwsz biblioteka, tzw. user-guided wymaga od programisty dostarczenia funkcji pakujących i rozpakowujących stan procesu, ale dostarcza łatwego w użyciu API z wykorzystaniem stałych MPI. Wykorzystuje funkcje I/O MPI-2 lub dedykowany proces master...
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Portable parallel simulator using MPI for 2D and 3D domains: design and performance testing
PublikacjaW artykule prezentujemy szczegóły projektowo-implementacyjne naszego modularnego kodu symulacyjnego z wykorzystaniem MPI, w tym nakładaniem obliczeń i komunikacji. Podkreślamy modularność naszej implementacji pozwalającą na łatwą adaptację kodu dla innych zasotosowań. Prezentujemy związek pomiędzy przyspieszeniem obliczeń, rozmiarem i kształtami trójwymiarowych domen z różnymi stosunkami liczby węzłów aktualizowanych przez procesor...
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Określenie miejsca wypadku przy pomocy metody Slibara
PublikacjaStatystyki dotyczące wypadków drogowych wskazują znaczy udział wypadków z udziałem pieszych. Przebieg zderzenia pojazdu samochodowego z pieszym stanowi złożony proces zależny od wielu czynników takich jak np. prędkość uderzenia, wzrost pieszego, kształt nadwozia, miejsce uderzenia pojazdu w ciało pieszego oraz wiele innych. W celu ustalenia rzeczywistego przebiegu takiego zdarzenia należy posłużyć się odpowiednimi narzędziami obliczeniowymi...
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Piotr Chrzan prof. dr hab. inż.
OsobyUrodził się w 1954 r. w Sopocie. Jest absolwentem Wydziału Elektroniki Politechniki Gdańskiej (1978). W 1980 r. podjął pracę na Wydziale Elektrycznym w zespole prof. Jerzego Jaczewskiego. W 1988 r. uzyskał stopień naukowy doktora nauk technicznych, habilitację w 1999 r., w zakresie elektrotechniki: energoelektroniki i automatyki napędu, a tytuł profesora w 2017 r. Był promotorem 6 obronionych prac doktorskich (w tym 3 z wyróżnieniem)....
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Maria Damps dr n.med.
OsobyA specialist in anesthesiology and intensive care, Dr. Maria Damps works every day at the Upper Silesian Children's Health Center in Katowice and as a scientific and research assistant at the Faculty of Medical Sciences at the Medical University of Silesian, Poland. Dr. Damps is a graduate of postgraduate studies in medical law and bioethics at the Jagiellonian University in Kraków. Dr. Damps is also the chairwoman of the Ethics...
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Związki biologicznie czynne pochodzenia naturalnego - 2020/2021
Kursy OnlineKurs e-Nauczania dla studentów kierunku Biotechnologia Leków, II stopień, semestr 1. Kurs zawiera linki do wykładów online, a także skrypty w postaci plików .pdf oraz .pptx. Materiały pojawiają się w regularnych odstępach czasu, o czym Studenci będą informowani drogą mailową.
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i-Clare + UA Dynamiczne symulacje CFD płynu przepływającego przez porowatą szklistą strukturę węglową
ProjektyProjekt realizowany w Katedra Metrologii i Optoelektroniki zgodnie z porozumieniem FWD/II/117/i-CLARE_UA/2022 z dnia 2022-12-13
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Vitamin D serum levels in multiorgan failure critically ill patients undergoing continuous renal replacement therapies
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Mixed electromagnetic - circuits modeling and parallelization for rigorouscharacterization of cosite interference in wireless communication channels. W: UGC 2002 Homepage [online]. Department of Defense High Performance Com- puting Modernization Program. Users Group Conference 2002. Austin, Texas, USA. June 10-14, 2002. [Dostęp: 15 grudnia**2002]. Dostępny w World Wide Web: http://www.hpcmo.hpc.mil/Htdocs/UGC/UGC02/paper/[45 slajdów]. Modelowanie układów elektromagnetycznych i zrównoleglanie w celu określenia wzajemnych oddziaływań w bezprzewodowych kanałach komunikacyjnych.
PublikacjaRównoległe działanie sąsiadujące modułów nadawczo-odbiorczych typowo prowa-dzi do efektów ubocznych z powodu wzajemnych oddziaływań, które obniżają pa-rametry sieci. W celu scharakteryzowania takich efektów, zaprezentowano roz-wiązanie równań Maxwella w dziedzinie czasu z modelowaniem efektów nielinio-wych.
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Paweł Lubomski dr inż.
OsobyAbsolwent Politechniki Gdańskiej. Po zebraniu doświadczeń jako analityk systemowy i biznesowy w dużych korporacjach IT wrócił na uczelnię, gdzie aktualnie pracuje na stanowisku Dyrektora Centrum Usług Informatycznych. Naukowo specjalizuje się w zagadnieniach bezpieczeństwa i niezawodności dużych rozproszonych systemów usługowych oraz budową bezpiecznych i wydajnych architektur IT, a także projektowania architektur chmurowych oraz...
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Turkish Journal of Intensive Care-Turk Yogun Bakim Dergisi
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AIDS CARE-PSYCHOLOGICAL AND SOCIO-MEDICAL ASPECTS OF AIDS/HIV
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International Journal of Practice-Based Learning in Health and Social Care
Czasopisma -
The viscometric evaluation of the gelation rate the chitosan-metal oxide hydrogel systems.
Dane BadawczeThe dataset shows the change in the viscosity of a hydrogel medium over time. Viscometric measurement was used as a universal method for determining the cross-linking rate of chitosan hydrogel using metal oxides or other solutions with a negative net charge. The method was prepared as a method of predicting the kinetics of additive manufacturing using...
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Optimization of Data Assignment for Parallel Processing in a Hybrid Heterogeneous Environment Using Integer Linear Programming
PublikacjaIn the paper we investigate a practical approach to application of integer linear programming for optimization of data assignment to compute units in a multi-level heterogeneous environment with various compute devices, including CPUs, GPUs and Intel Xeon Phis. The model considers an application that processes a large number of data chunks in parallel on various compute units and takes into account computations, communication including...
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The influence of strain on the Verwey transition as a function of dopant concentration: towards a geobarometer for magnetite-bearing rocks
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Journal of Wound Care
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Primary Care Diabetes
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The luminescence study ofNaK2Li[Li3SiO4]4:Ce coumpounds.
Dane BadawczePhosphors with a rigid and symmetrical structure are urgently needed. The alkali lithosilicate family (A[Li3SiO4]) has been extensively studied with a narrow emission band due to its unique cuboid-coordinated environment and rigid structure. However, here we demonstrate for the first time Ce-doped NaK2Li[Li3SiO4]4 phosphors with a broad emission band,...
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Acral melanoma - Male, 69 - Tissue image [9200729571538691]
Dane BadawczeThis is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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Acral melanoma - Male, 69 - Tissue image [9200729571533481]
Dane BadawczeThis is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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Acral melanoma - Male, 69 - Tissue image [9200729571539741]
Dane BadawczeThis is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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Acral melanoma - Male, 69 - Tissue image [9200729571531811]
Dane BadawczeThis is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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Acral melanoma - Male, 69 - Tissue image [9200729571537901]
Dane BadawczeThis is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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Extended investigation of performance-energy trade-offs under power capping in HPC environments
Publikacja—In the paper we present investigation of performance-energy trade-offs under power capping using modern processors. The results are presented for systems targeted at both server and client markets and were collected from Intel Xeon E5 and Intel Xeon Phi server processors as well as from desktop and mobile Intel Core i7 processors. The results, when using power capping, show that we can find various interesting combinations of...
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Energy-Aware High-Performance Computing: Survey of State-of-the-Art Tools, Techniques, and Environments
PublikacjaThe paper presents state of the art of energy-aware high-performance computing (HPC), in particular identification and classification of approaches by system and device types, optimization metrics, and energy/power control methods. System types include single device, clusters, grids, and clouds while considered device types include CPUs, GPUs, multiprocessor, and hybrid systems. Optimization goals include various combinations of...
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From Sequential to Parallel Implementation of NLP Using the Actor Model
PublikacjaThe article focuses on presenting methods allowing easy parallelization of an existing, sequential Natural Language Processing (NLP) application within a multi-core system. The actor-based solution implemented with the Akka framework has been applied and compared to an application based on Task Parallel Library (TPL) and to the original sequential application. Architectures, data and control flows are described along with execution...
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Analyzing energy/performance trade-offs with power capping for parallel applications on modern multi and many core processors
PublikacjaIn the paper we present extensive results from analyzing energy/performance trade-offs with power capping observed on four different modern CPUs, for three different parallel applications such as 2D heat distribution, numerical integration and Fast Fourier Transform. The CPU tested represent both multi-core type CPUs such as Intel⃝R Xeon⃝R E5, desktop and mobile i7 as well as many-core Intel⃝R Xeon PhiTM x200 but also server, desktop...
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Towards Easy-to-Use Checkpointing of MPI Applications within CLUSTERIX.
PublikacjaW literaturze wymienia się wiele bibliotek/systemów zarówno poziomu jądra jak i użytkownika, które wspomagają zapisywanie i odtwarzanie stanu procesów. W odniesieniu do aplikacji równoległych, jest to jednak zadanie cały czas trudne. Praca prezentuje nasze podejście do zapisywania/odtwarzania stanu aplikacji MPI wspomagane przez programistę, które wykorzystane będzie w środowisku projektu CLUSTERIX tj. zintegrowanej grupie klastrów...
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Towards Efficient Parallel Image Processing on Cluster Grids Using GIMP.
PublikacjaZe względu na fakt, iż niewielu użytkowników posiada wiedzę niezbędną do wykorzystania niskopoziomowych bibliotek programowania równoległego w celu przyspieszenia działania programów operujących na obrazach, proponujemy plugin do znanej aplikacji GIMP, który umożliwia potokowe wykonanie szeregu filtrów na obrazach załadowanych przez plugin. Prezentujemy szczegóły implementacyjne, scenariusze testowe i wyniki na klastrach, potencjalnie...
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Investigation of Performance and Energy Consumption of Tokenization Algorithms on Multi-core CPUs Under Power Capping
PublikacjaIn this paper we investigate performance-energy optimization of tokenizer algorithm training using power capping. We focus on parallel, multi-threaded implementations of Byte Pair Encoding (BPE), Unigram, WordPiece, and WordLevel run on two systems with different multi-core CPUs: Intel Xeon 6130 and desktop Intel i7-13700K. We analyze execution times and energy consumption for various numbers of threads and various power caps and...
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Teaching High–performance Computing Systems – A Case Study with Parallel Programming APIs: MPI, OpenMP and CUDA
PublikacjaHigh performance computing (HPC) education has become essential in recent years, especially that parallel computing on high performance computing systems enables modern machine learning models to grow in scale. This significant increase in the computational power of modern supercomputers relies on a large number of cores in modern CPUs and GPUs. As a consequence, parallel program development based on parallel thinking has become...
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Dynamic GPU power capping with online performance tracing for energy efficient GPU computing using DEPO tool
PublikacjaGPU accelerators have become essential to the recent advance in computational power of high- performance computing (HPC) systems. Current HPC systems’ reaching an approximately 20–30 mega-watt power demand has resulted in increasing CO2 emissions, energy costs and necessitate increasingly complex cooling systems. This is a very real challenge. To address this, new mechanisms of software power control could be employed. In this...
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The Idea of a Student Research Project as a Method of Preparing a Student for Professional and Scientific Work
PublikacjaIn the paper we present the idea and implementation of a student research project course within the master’s program at the Faculty of Electronics, Telecommunications and Informatics, Gdansk Tech. It aims at preparing students for performing research and scientific tasks in future professional work. We outline the evolution from group projects into research project and the current deployment of both at bachelor’s and master’s levels...
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Dataset Characteristics and Their Impact on Offline Policy Learning of Contextual Multi-Armed Bandits
PublikacjaThe Contextual Multi-Armed Bandits (CMAB) framework is pivotal for learning to make decisions. However, due to challenges in deploying online algorithms, there is a shift towards offline policy learning, which relies on pre-existing datasets. This study examines the relationship between the quality of these datasets and the performance of offline policy learning algorithms, specifically, Neural Greedy and NeuraLCB. Our results...
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Energy-Aware Scheduling for High-Performance Computing Systems: A Survey
PublikacjaHigh-performance computing (HPC), according to its name, is traditionally oriented toward performance, especially the execution time and scalability of the computations. However, due to the high cost and environmental issues, energy consumption has already become a very important factor that needs to be considered. The paper presents a survey of energy-aware scheduling methods used in a modern HPC environment, starting with the...
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DEPO: A dynamic energy‐performance optimizer tool for automatic power capping for energy efficient high‐performance computing
PublikacjaIn the article we propose an automatic power capping software tool DEPO that allows one to perform runtime optimization of performance and energy related metrics. For an assumed application model with an initialization phase followed by a running phase with uniform compute and memory intensity, the tool performs automatic tuning engaging one of the two exploration algorithms—linear search (LS) and golden section search (GSS), finds...
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GPU Power Capping for Energy-Performance Trade-Offs in Training of Deep Convolutional Neural Networks for Image Recognition
PublikacjaIn the paper we present performance-energy trade-off investigation of training Deep Convolutional Neural Networks for image recognition. Several representative and widely adopted network models, such as Alexnet, VGG-19, Inception V3, Inception V4, Resnet50 and Resnet152 were tested using systems with Nvidia Quadro RTX 6000 as well as Nvidia V100 GPUs. Using GPU power capping we found other than default configurations minimizing...
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Utilisation and outcomes of a mobile (ambulance and air transport) venovenous extracorporeal membrane oxygenation (VV-ECMO) program in Poland during the COVID-19 pandemic – a retrospective, two-centres, case-series study
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Real-time ultrasound-guided infraclavicular axillary vein cannulation: A prospective study in mechanically ventilated critically ill patients
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Evaluation of multimedia applications in a cluster oriented environment
PublikacjaIn the age of Information and Communication Technology (ICT), Web and the Internet have changed significantly the way applications are developed, deployed and used. One of recent trends is modern design of web-applications based on SOA. This process is based on the composition of existing web services into a single scenario from the point of view of a particular user or client. This allows IT companies to shorten product time-to-market....
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Parallel computations in the volunteer based Comcute system
PublikacjaThe paper presents Comcute which is a novel multi-level implemen- tation of the volunteer based computing paradigm. Comcute was designed to let users donate the computing power of their PCs in a simplified manner, requiring only pointing their web browser at a specific web address and clicking a mouse. The server side appoints several servers to be in charge of execution of particular tasks. Thanks to that the system can survive...
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Runtime Visualization of Application Progress and Monitoring of a GPU-enabled Parallel Environment
PublikacjaThe paper presents design, implementation and real life uses of a visualization subsystem for a distributed framework for parallelization of workflow-based computations among clusters with nodes that feature both CPUs and GPUs. Firstly, the proposed system presents a graphical view of the infrastructure with clusters, nodes and compute devices along with parameters and runtime graphs of load, memory available, fan speeds etc. Secondly,...
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The impact of the AC922 Architecture on Performance of Deep Neural Network Training
PublikacjaPractical deep learning applications require more and more computing power. New computing architectures emerge, specifically designed for the artificial intelligence applications, including the IBM Power System AC922. In this paper we confront an AC922 (8335-GTG) server equipped with 4 NVIDIA Volta V100 GPUs with selected deep neural network training applications, including four convolutional and one recurrent model. We report...
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Highlights from RNDM 2018 – 10th Anniversary Workshop on Resilient Networks Design and Modeling
PublikacjaArtykuł prezentujący relację z workshopu RNDM 2018