Wyszukiwarka
Centrum Informat. Trójmiejskiej Akadem.Sieci Komputerowej
Publikacje
Filtry
wszystkich: 35
Katalog Publikacji
Rok 2023
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UNRES-GPU for Physics-Based Coarse-Grained Simulations of Protein Systems at Biological Time- and Size-Scales
PublikacjaThe dynamics of the virus like particles (VLPs) corresponding to the GII.4 Houston, GII.2 SMV, and GI.1 Norwalk strains of human noroviruses (HuNoV) that cause gastroenteritis was investigated by means of long-time (about 30 μs in the laboratory timescale) molecular dynamics simulations with the coarse-grained UNRES force field. The main motion of VLP units turned out to be the bending at the junction between the P1 subdomain (that...
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Parallel implementation of a Sailing Assistance Application in a Cloud Environment
PublikacjaSailboat weather routing is a highly complex problem in terms of both the computational time and memory. The reason for this is a large search resulting in a multitude of possible routes and a variety of user preferences. Analysing all possible routes is only feasible for small sailing regions, low-resolution maps, or sailboat movements on a grid. Therefore, various heuristic approaches are often applied, which can find solutions...
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Optimization of parallel implementation of UNRES package for coarse‐grained simulations to treat large proteins
PublikacjaWe report major algorithmic improvements of the UNRES package for physics-based coarse-grained simulations of proteins. These include (i) introduction of interaction lists to optimize computations, (ii) transforming the inertia matrix to a pentadiagonal form to reduce computing and memory requirements, (iii) removing explicit angles and dihedral angles from energy expressions and recoding the most time-consuming energy/force terms...
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Long‐time scale simulations of virus‐like particles from three human‐norovirus strains
PublikacjaThe dynamics of the virus like particles (VLPs) corresponding to the GII.4 Houston, GII.2 SMV, and GI.1 Norwalk strains of human noroviruses (HuNoV) that cause gastroenteritis was investigated by means of long-time (about 30 μs in the laboratory timescale) molecular dynamics simulations with the coarse-grained UNRES force field. The main motion of VLP units turned out to be the bending at the junction between the P1 subdomain (that...
Rok 2021
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Total chromatic sum for trees
PublikacjaThe total chromatic sum of a graph is the minimum sum of colors (natural numbers) taken over all proper colorings of vertices and edges of a graph. We provide infinite families of trees for which the minimum number of colors to achieve the total chromatic sum is equal to the total chromatic number. We construct infinite families of trees for which these numbers are not equal, disproving the conjecture from 2012.
Rok 2018
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TASK CLOUD INFRASTRUCTURE IN THE CENTRE OF INFORMATICS – TRICITY ACADEMIC SUPERCOMPUTER & NETWORK
PublikacjaThe cloud solution called the TASK cloud is described. Its main components and the way of their implementation are described. Examples of deployed environments based on the cloud are also presented. Moreover, the idea of combining the cloud and big data platforms is suggested and discussed.
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Suitability of LoRaWAN Technology for the Development of Maritime Applications
PublikacjaThe LoRaWAN Technology opens new possibilities for gathering and analysis of distributed data. In the paper we concentrate on its maritime usability which was tested by us in the period from June to August 2018. Measurements of the LoRaWAN network coverage in the Bay of Gdansk area were carried out. Various conditions and places were tested. The research was planned in such a way as to gradually increase the range and control the...
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Methodology of Selecting the Hadoop Ecosystem Configuration in Order to Improve the Performance of a Plagiarism Detection System
PublikacjaThe plagiarism detection problem involves finding patterns in unstructured text documents. Similarity of documents in this approach means that the documents contain some identical phrases with defined minimal length. The typical methods used to find similar documents in dig- ital libraries are not suitable for this task (plagiarism detection) because found documents may contain similar content and we have not any war- ranty that...
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Mashup Approaches for Improving Service Oriented Business Scenarios
PublikacjaTwo kinds of business scenarios are considered: application- and service-oriented. It is shown that the former are more flexible and easier reconfigurable for both traditional (human-oriented) and IT services. Moreover, complex IT services can be created by simple IT services using the modern mashup technology. It is the reason why such business scenarios can be modeled by BPMN in much easier ways. A simple example of a supply...
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Integrated information and prediction Web Service WaterPUCK General concept
PublikacjaIn this paper, general concept of a new method as ‘Integrated information and prediction Web Service WaterPUCK’ for investigation influence of agricultural holdings and land-use structures on coastal waters of the southern Baltic Sea is presented. WaterPUCK Service is focused on determination of the current and future environmental status of the surface water and groundwater located in the Puck District (Poland) and its impact...
Rok 2020
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Survey of Methodologies, Approaches, and Challenges in Parallel Programming Using High-Performance Computing Systems
PublikacjaThis paper provides a review of contemporary methodologies and APIs for parallel programming, with representative technologies selected in terms of target system type (shared memory, distributed, and hybrid), communication patterns (one-sided and two-sided), and programming abstraction level. We analyze representatives in terms of many aspects including programming model, languages, supported platforms, license, optimization goals,...
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Process arrival pattern aware algorithms for acceleration of scatter and gather operations
PublikacjaImbalanced process arrival patterns (PAPs) are ubiquitous in many parallel and distributed systems, especially in HPC ones. The collective operations, e.g. in MPI, are designed for equal process arrival times (PATs), and are not optimized for deviations in their appearance. We propose eight new PAP-aware algorithms for the scatter and gather operations. They are binomial or linear tree adaptations introducing additional process...
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Long Distance Geographically Distributed InfiniBand Based Computing
PublikacjaCollaboration between multiple computing centres, referred as federated computing is becom- ing important pillar of High Performance Computing (HPC) and will be one of its key components in the future. To test technical possibilities of future collaboration using 100 Gb optic fiber link (Connection was 900 km in length with 9 ms RTT time) we prepared two scenarios of operation. In the first one, Interdisciplinary Centre for Mathematical...
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Investigation into MPI All-Reduce Performance in a Distributed Cluster with Consideration of Imbalanced Process Arrival Patterns
PublikacjaThe paper presents an evaluation of all-reduce collective MPI algorithms for an environment based on a geographically-distributed compute cluster. The testbed was split into two sites: CI TASK in Gdansk University of Technology and ICM in University of Warsaw, located about 300 km from each other, both connected by a fast optical fiber Ethernet-based 100 Gbps network (900 km part of the PIONIER backbone). Each site hosted a set...
Rok 2017
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SERVICE ORIENTED SCENARIOS FOR SUPPORT ENTERPRISE PROJECT MANAGEMENT
PublikacjaIn the paper, a service oriented architecture is used to describe various scenarios of human-oriented enterprises. They can be modeled by BPMN to show basic information flow. We consider business scenarios to present another modeling solution called service orchestration or service mashup. That approach gives an opportunity for the right management through taking the best possible choice of services, or composition of services....
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Processing of Satellite Data in the Cloud
PublikacjaThe dynamic development of digital technologies, especially those dedicated to devices generating large data streams, such as all kinds of measurement equipment (temperature and humidity sensors, cameras, radio-telescopes and satellites – Internet of Things) enables more in-depth analysis of the surrounding reality, including better understanding of various natural phenomenon, starting from atomic level reactions, through macroscopic...
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Open extensive IoT research and measurement infrastructure for remote collection and automatic analysis of environmental data.
PublikacjaInternet of Things devices that send small amounts of data do not need high bit rates as it is the range that is more crucial for them. The use of popular, unlicensed 2.4 GHz and 5 GHz bands is fairly legally enforced (transmission power above power limits cannot be increased). In addition, waves of this length are very diffiult to propagate under field conditions (e.g. in urban areas). The market response to these needs are the...
Rok 2013
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Propozycja procedury oceny bezprzewodowych sieci wifi w środkach transportu publicznego na przykładzie Trójmiejskiej SKM
PublikacjaW ramach realizacji projektu budowy linii kolejowej pomiędzy Centrum a Lotniskiem Gdańsk Rębiechowo przez spółkę "Pomorska Kolej Metropolitalna S.A", postanowiono zbadać techniczne możliwości udostępnienia Internetu pasażerom na czas podróży. Celem opisanych badań było przetestowanie, w warunkach rzeczywistego ruchu pociągów, możliwości zapewnienia dostępu do Internetu dla pasażerów publicznej komunikacji kolejowej przy zastosowaniu...
Rok 2022
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Inteligentne zarządzanie usługami chmurowymi
PublikacjaRozwój chmur obliczeniowych stanowi wyzwanie dla nowych efektywnych metod zarządzania zasobami chmurowymi, zwłaszcza, że oprócz usług typu SaaS rozwija się nowe kategorie usług jak obliczenia brzegowe czy wielochmurowe. W pracy zaproponowano ogólny model zarządzania usługami oraz efektywne procedury alokacji zasobów. Podkreślono potrzebę oszacowania parametrów zasobów chmury by zapewnić wykonanie żądanych usług. Przedstawiono również...
Rok 2019
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Influence of YARN Schedulers on Power Consumption and Processing Time for Various Big Data Benchmarks
PublikacjaClimate change caused by human activities can influence the lives of everybody onthe planet. The environmental concerns must be taken into consideration by all fields of studyincludingICT. Green Computing aims to reduce negative effects of IT on the environment while,at the same time, maintaining all of the possible benefits it provides. Several Big Data platformslike Apache Spark orYARNhave become widely used in analytics and...