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Search results for: F1-ATPASE
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Torsional elasticity and energetics of F1-ATPase
PublicationFoF1-ATPase is a rotary motor protein synthesizing ATP from ADP driven by a cross-membrane proton gradient. The proton flow through the membrane-embedded Fo generates the rotary torque that drives the rotation of the asymmetric shaft of F1. Mechanical energy of the rotating shaft is used by the F1 catalytic subunit to synthesize ATP. It was suggested that elastic power transmission with transient storage of energy in some compliant...
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Rotation Triggers Nucleotide-Independent Conformational Transition of the Empty β Subunit of F1-ATPase
PublicationF1-ATPase (F1) is the catalytic portion of ATP synthase, a rotary motor protein that couples proton gradients to ATP synthesis. Driven by a proton flux, the F1 asymmetric γ subunit undergoes a stepwise rotation inside the α3β3 headpiece and causes the β subunits’ binding sites to cycle between states of different affinity for nucleotides. These concerted transitions drive the synthesis of ATP from ADP and phosphate. Here, we study...
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Mechanochemical Energy Transduction during the Main Rotary Step in the Synthesis Cycle of F1-ATPase
PublicationF1-ATPase is a highly efficient molecular motor that can synthesize ATP driven by a mechanical torque. Its ability to function reversibly in either direction requires tight mechanochemical coupling between the catalytic domain and the rotating central shaft, as well as temporal control of substrate binding and product release. Despite great efforts and significant progress, the molecular details of this synchronized and fine-tuned...
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Small GTPases
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Molecular mechanism and energetics of coupling between substrate binding and product release in the F 1 -ATPase catalytic cycle
PublicationF1-ATPase is a motor protein that couples the rotation of its rotary γ subunit with ATP synthesis or hydrolysis. Single-molecule experiments indicate that nucleotide binding and release events occur almost simultaneously during the synthesis cycle, allowing the energy gain due to spontaneous binding of ADP to one catalytic β subunit to be directly harnessed for driving the release of ATP from another rather than being dissipated...
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Pale wkręcane ATLAS
PublicationPrzedstawiono praktyczne zastosowanie nowoczesnych, przemieszczeniowych pali wkręcanych typu ATLAS. Omówiono zasady obliczeń tego rodzaju pali, również na podstawie wyników badań sondą CPT. Przykłady posadowień z terenu Polski pozwalają na ocenę mozliwości posadowień w warunkach krajowych.
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Pale wkręcane ATLAS
PublicationOmówiono nową technologię pali ATLAS. Przedstawiono przykłady zastosowania w odniesieniu do gruntów silnie uwarstwionych. Przedyskutowano metody obliczeń.
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Pressure Dependence of Acoustic Modes in AgGaSe 2
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Caspase-11 promotes allergic airway inflammation
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Europejski atlas ryzyka na drogach
PublicationW maju 2008r. FRIL, PZM i PG włączyły się w realizację 3-letniego Projektu ''Europejski atlas bezpieczeństwa ruchu drogowego'' realizowanego w ramach Programu Euro-RAP przy wsparciu Komisji Europejskiej. Pod przewodnictwem EuroRAP zespoły z 10 państw opracowują krajowe Mapy ryzyka na drogach: Niemiec, Hiszpanii, Holandii, Belgii, szwecji, Wielkiej Brytanii, Włoch, Słowacji, Czech i Polski. Mapy krajowe po połączeniu utworzą Europejski...
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Experience gained at the application of Atlas piles in Poland
PublicationAnaliza współpracy pali ATLAS z uwarstwionym podłożem gruntowym na podstawie obliczeń oraz próbnych obciążeń statycznych. Przydatność pali ATLAS w terenach zurbanizowanych.
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Doświadczenia ze stosowania pali wkręcanych ''Atlas''
PublicationNowoczesna technologia pali przemieszczeniowych typu Atlas jest coraz częściej stosowana w praktyce. Stosowanie tego rozwiązania w praktyce wymaga jednak dobrej znajomości szczegółów technologicznych i uwzględnienia parametrów, które w praktyce mogą ograniczać długość pali. Na przykładzie budowy budynku w Politechnice Gdańskiej omawiano wpływ parametrów geometrycznych pali na ich nośność oraz wpływ średnicy na krzywą osiadania.
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The Motion Analysis of Attacus Atlas Rigid Wing
PublicationThe remarkable aerodynamic efficiency of flapping insect wings has fascinated researchers for many years. Butterfly wings are distinguished by a much larger lifting surface, and thus, a different style of flapping flight. The considerations described in the article are an introduction to a fully flexible analysis of the wing in motion. The study of the rigid wing gives the basic knowledge necessary in the further process. The yaw,...
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The Digital Tissue and Cell Atlas and the Virtual Microscope
PublicationWith the cooperation of the CI TASK (Center of lnformatics Tri-Citry Academic Supercomputer and network) and the Gdańsk University of Technology, the Medical University of Gdańsk undertook the creation of the Digital Tissue and Cell Atlas and the Virtual Microscope for the needs of the Bridge of Data project. In the beginning, an extensive collection of histological and cytological slides was carefully selected and prepared by...
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The wetting and interfacial properties of alumina surface treated with dipalmitoylphosphatidylcholine and lipase enzyme
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Deformable model of a butterfly in motion on the example of Attacus atlas
PublicationInsect wings can undergo significant chordwise (camber) as well as spanwise (twist) deformation during flapping flight but the effect of these deformations is not well understood. The shape and size of butterfly wings leads to particularly large wing deformations, making them an ideal test case for investigation of these effects. High-speed videogrammetry was used to capture the wing kinematics and deformations. The movements of...
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Atlas ryzyka na drogach krajowych w Polsce
PublicationEuropejski ''Program oceny ryzyka na drogach'' jest jedną z inicjatyw wspierających realizację ''wizji zero''. Program ma na celu przeprowadzenie badań ryzyka panującego na drogach krajów Unii Europejskiej, korzystając z jednolitej metodyki. Wyniki tych badań mają posłużyć do metodycznej oceny poziomu zagrożenia zdrowia i życia w ruchu drogowym. W chwili obecnej program ten realizuje ponad 30 krajów Europy, a kilka nastepnych zamierza...
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Identification and molecular modeling of a novel lipase from an Antarctic soil metagenomic library.
PublicationIn this work, we present the construction of a metagenomic library in Escherichia coli using pUC19 vector and environmental DNA directly isolated from Antarctic topsoil and screened for lipolytic enzymes. The screening on agar supplemented with olive oil and rhodamine B revealed one clone with lipolytic activity (Lip1) out of 11,000 E. coli clones. This clone harbored a plasmid, pLip1, which has an insert of 4722 bp that has been...
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Electrokinetic properties of n-tetradecane/ethanol emulsions with DPPC and enzyme lipase or phospholipase A2
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The assessment of load-settlement curve for Atlas piles correlated with CPT tests
PublicationRacjonalne stosowanie pali przemieszczeniowych typu Atlas wymaga analitycznej oceny pełnej krzywej obciążenie - osiadanie. W pracy przedstawiono możliwości wykorzystania metody funkcji transformacyjnych t-z (dla pobocznicy) oraz q-z (dla podstawy) dla oceny krzywej osiadania. Jednostkowe graniczne opory na pobocznicy, tmax, oraz pod podstawą, gf, określono na podstawie metody bezpośredniej, wykorzystując opory stożka sondy, qc....
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Molecular and structural characteristics of cod gelatin films modifiedwith EDC and TGase
PublicationCod gelatin films before and after cross-linking of gelatin with 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC) or transglutaminase (TGase) have been characterized by FT-IR spectroscopy and DSC analysis. For comparison, a film prepared from unmodified pig gelatin has been also analysed. The difference spectra showed that cod gelatin during the film formation involved first of all water-to-amide hydrogen bonds, and the film...
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Effect of Temperature on n-Tetradecane Emulsion in the Presence of Phospholipid DPPC and Enzyme Lipase or Phospholipase A2
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"All together to protect you" – ATLAS Network, European Special Intervention Units
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Atlas of Genetics and Cytogenetics in Oncology and Haematology
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Resourcing in social enterprise – content analysis of 'good practices' profiled in 'Atlas of social economy' in Poland
PublicationThe aim of this paper is to analyze and show what processes accompany resource mobilization among social enterprises. For this, the author uses a sample of 25 ‘good practice’ examples selected and presented in ‘Atlas of social economy’ in Poland, in the most popular and well-established knowledge base web portal on social economy and social enterprise in Poland. The author makes an attempt at deconstructing the profiles of the...
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Atas de Saúde Ambiental
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The atlas of inequality aversion: theory and empirical evidence on 55 countries from the Luxembourg Income Study database
PublicationResearch background: In the distributive analysis, the constant relative inequality aversion utility function is a standard tool for ethical judgements of income distributions. The sole parameter ε of this function expresses a society’s aversion to inequality. However, the profession has not committed to the range of ε. When assessing inequality and other welfare characteristics, analysts assume an arbitrary level of ε, common...
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Kreowanie marki narodowej w Polsce w warunkach globalizacji rynku (na przykładzie grupy ATLAS)
PublicationTematem pracy jest budowanie marki narodowej w Polsce w warunkach globalizacji rynku. Autor omawiając pojęcie i istote marki narodowej formułuje własna jej definicję. Stara się wykazać w pracy, że marka narodowa produktu jest z punktu widzenia osiągnięcia korzyści rynkowych - pożądanym towarem i cenioną wartością, dającą możliwośc uzyskania przez tę markę przewagi konkurencyjnej na rynku.
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Badanie podatności spolimeryzowanych triacylogliceroli na hydrolizę w obecności lipazy trzustkowej. Study of susceptibility polymerized triacylglycerols to hydrolytic action of pancreatic lipase.
PublicationBadano przebieg lipolizy ogrzewanego oleju rzepakowego i słonecznikowego o wysokim stopniu przemian termooksydatywnych. Wykorzystano do tego netodę HPSEC. Stopień lipolizy polimerów i dimerów TAG zależał głównie od ich ilości. W oleju o najniższym stopniu przemian (31%FP) związki te uległy lipolizie prawie w 100%, lecz przy wydłużonym czasie reakcji.
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Atlas of the Oral and Maxillofacial Surgery Clinics of North America
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Identification of 1H‐indene‐(1, 3, 5, 6)‐tetrol derivatives as potent pancreatic lipase inhibitors using molecular docking and molecular dynamics approach
PublicationPancreatic lipase is a potential therapeutic target to treat diet-induced obesity in humans, as obesity-related diseases continue to be a global problem. Despite intensive research on finding potential inhibitors, very few compounds have been introduced to clinical studies. In this work, new chemical scaffold 1H-indene-(1,3,5,6)-tetrol was proposed using knowledge-based approach, and 36 inhibitors were derived by modifying its...
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Ceragenin CSA-13 as free molecules and attached to magnetic nanoparticle surfaces induce caspase-dependent apoptosis in human breast cancer cells via disruption of cell oxidative balance
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Jakub Szulwic dr inż.
PeopleJakub Szulwic (born 23 December 1974 in Bydgoszcz, Poland) – is an experienced, licensed Land Surveyor, specialized in construction monitoring by the use of photogrammetric methods and laser scanning technology. His specialization are geomatics and geoinformatics. He is an author about 100 publications including 50 indexed in Web of Science (H-index = 15) In 1993, He graduated from Secondary School in Tuchola, Poland on physics...
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Evaluation of Sicilian landraces of broccoli (B. oleracea var. italica Plenck) for quality traits
PublicationBrassica oleracea L. var. italica Plenck is one of the most popular vegetables which belong to Brassicaceae family. It is getting attention as an important source of bioactive compounds such as glucosinolates, and many other phytochemicals. In the frame of the H2020 BRESOV project, we evaluated three landraces (‘Broccolo nero', ‘Ramoso calabrese' and ‘Sparaceddu') and two commercial F1 hybrid cultivars (‘Marathon' and ‘Naxos')....
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Classification of Sea Going Vessels Properties Using SAR Satellite Images
PublicationThe aim of the project was to analyze the possibility of using machine learning and computer vision to identify (indicate the location) of all sea-going vessels located in the selected area of the open sea and to classify the main attributes of the vessel. The key elements of the project were to download data from the Sentinel-1 satellite [1], download data on the sea vessels [2], then automatically tag data and develop a detection...
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From Scores to Predictions in Multi-Label Classification: Neural Thresholding Strategies
PublicationIn this paper, we propose a novel approach for obtaining predictions from per-class scores to improve the accuracy of multi-label classification systems. In a multi-label classification task, the expected output is a set of predicted labels per each testing sample. Typically, these predictions are calculated by implicit or explicit thresholding of per-class real-valued scores: classes with scores exceeding a given threshold value...
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ColorNephroNet: Kidney tumor malignancy prediction using medical image colorization
PublicationRenal tumor malignancy classification is one of the crucial tasks in urology, being a primary factor included in the decision of whether to perform kidney removal surgery (nephrectomy) or not. Currently, tumor malignancy prediction is determined by the radiological diagnosis based on computed tomography (CT) images. However, it is estimated that up to 16% of nephrectomies could have been avoided because the tumor that had been...
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Thermal stability of V2O5 nanorods under oxidizing atmosphere
Open Research DataThe DataSet contains the TGA curves of V2O5 nanorods obtained at 650°C. The information about nanorods synthesis is described in the Journal of Nanomaterials.
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Machine learning applied to acoustic-based road traffic monitoring
PublicationThe motivation behind this study lies in adapting acoustic noise monitoring systems for road traffic monitoring for driver’s safety. Such a system should recognize a vehicle type and weather-related pavement conditions based on the audio level measurement. The study presents the effectiveness of the selected machine learning algorithms in acoustic-based road traffic monitoring. Bases of the operation of the acoustic road traffic...
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Changes in heat flow of V2O5 nanorods under oxidizing atmosphere
Open Research DataThe DataSet contains the DSC curves of V2O5 nanorods obtained at 650°C. The information about nanorods synthesis is described in the Journal of Nanomaterials.
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Decomposition kinetics of vanadium xerogel powder
Open Research DataThe DataSet contains the TGA curves of vanadium As-prepared xerogel powder with different heating rates. The information about sol synthesis is described in the Journal of Nanomaterials.
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Thermal behaviour of vanadium xerogel powder under different inert atmosphere
Open Research DataThe DataSet contains the results of the thermal behavior of the vanadium xerogel powder. The information about xerogel powder synthesis is described in the Journal of Nanomaterials.
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Thermal stability of V2O5 nanorods under inert atmosphere
Open Research DataThe DataSet contains the TGA curves of V2O5 nanorods obtained at 650°C. The information about nanorods synthesis is described in the Journal of Nanomaterials.
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Crystallization kinetics of V2O5 nanorods
Open Research DataThe DataSet contains the DSC curves of As-prepared xerogel powder with different heating rates. The information about sol synthesis is described in the Journal of Nanomaterials.
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Case Study NEB Atlas / part I - 3D Models / Brunnshög, Lund
Open Research DataThe data presents the results of work on the analysis of contemporary neighbourhoods. The aim of this part of the research was to create a digital model - a simplified digital twin - for selected parts of housing estates already realised in various cities in Europe. This group presents a model for a fragment of the Brunnshög district in Lund, Sweden....
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Thermal stability of vanadium xerogel powder under different atmpshere
Open Research DataThe DataSet contains the results of the thermal behavior of the vanadium xerogel powder. The information about xerogel powder synthesis is described in the Journal of Nanomaterials.
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Changes in heat flow of V2O5 nanorods under inert atmosphere
Open Research DataThe DataSet contains the DSC curves of V2O5 nanorods obtained at 650°C. The information about nanorods synthesis is described in the Journal of Nanomaterials.
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Changes in heat of vanadium xerogel powder under different atmosphere
Open Research DataThe DataSet contains the DSC curves of the vanadium xerogel powder. The information about xerogel powder synthesis is described in the Journal of Nanomaterials.
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Keep It Flexible: Driving Macromolecular Rotary Motions in Atomistic Simulations with GROMACS
PublicationWe describe a versatile method to enforce the rotation of subsets of atoms, e.g., a protein subunit, in molecular dynamics (MD) simulations. In particular, we introduce a “flexible axis” technique that allows realistic flexible adaptions of both the rotary subunit as well as the local rotation axis during the simulation. A variety of useful rotation potentials were implemented for the GROMACS 4.5 MD package. Application to the...
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Analysis of Reconstituted Tripartite Complex Supports Avidity-based Recruitment of Hsp70 by Substrate Bound J-domain Protein
PublicationHsp70 are ubiquitous, versatile molecular chaperones that cyclically interact with substrate protein(s). The initial step requires synergistic interaction of a substrate and a J-domain protein (JDP) cochaperone, via its J-domain, with Hsp70 to stimulate hydrolysis of its bound ATP. This hydrolysis drives conformational changes in Hsp70 that stabilize substrate binding. However, because of the transient nature of substrate and JDP...