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Search results for: PROTON AFFINITY
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SEM photos of biochars
Open Research DataThe photos show biochars made from sunflower husks, along with 3 modifications
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Photos of LEGO bricks
Open Research DataRandom photos of the following LEGO bricks: 2419, 2450, 3022, 3031, 4070, 30357, 41682, 44570, 47998, 52107, 54383, 54384, 64799, 87609, 93274, 99206, 99781. The bricks were placed on a white sheet of paper, the photos were taken by hand, using Huawei P20 PRO camera positioned above the bricks. The photos were taken with and without flashlight. The...
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Proprotein Convertase Subtilisin/Kexin Type 9, Angiopoietin-Like Protein 8, Sortilin, and Cholesteryl Ester Transfer Protein—Friends of Foes for Psoriatic Patients at the Risk of Developing Cardiometabolic Syndrome?
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Patterned protein microarrays for bacterial detection. Langmuir**2003 vol.19 s. 436-439, 5 rys. bibliogr. 25 poz. Specyficzne mikroukłady protein do wykrywania bakterii.
PublicationSkonstruowano i przetestowano specyficzne mikroukłady przeciwciał selektyw-nie wiążących bakterie. Otrzymane układy umożliwiają wykrywanie bakterii E.coli0157:H7 oraz Renibacterium salmoninarum (RS). Matryce wytworzono techni-ką nadruku mikrokontaktów (ćCP). Charakterystykę układów uzyskano stosującmikroskopię skaningową (SPM). Ustalono, że selektywność otrzymanych układówobniża się podczas ekspozycji na bakterie niespecyficzne.
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Femtosecond Er-doped fiber laser source tunable from 872 to 1075 nm for two-photon vision studies in humans
PublicationWe report the development of a widely-tunable femtosecond fiber laser system and its application for two-photon vision studies. The source is based on an Er-doped fiber laser with spectral shift up to 2150 nm, followed by a second harmonic generation module to generate a frequency-doubled beam tunable from 872 to 1075 nm. The source delivers sub-230 fs pulses with nearly-constant duration over the entire tuning range, with output...
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Molecular mechanism and energetics of coupling between substrate binding and product release in the F 1 -ATPase catalytic cycle
PublicationF1-ATPase is a motor protein that couples the rotation of its rotary γ subunit with ATP synthesis or hydrolysis. Single-molecule experiments indicate that nucleotide binding and release events occur almost simultaneously during the synthesis cycle, allowing the energy gain due to spontaneous binding of ADP to one catalytic β subunit to be directly harnessed for driving the release of ATP from another rather than being dissipated...
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Thermal behavior of the products of 2-chloro-2-propen-1-ol oligomerization
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Hot spot identification by ligand-protein surface interactions mapping – in silico study
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Prediction of Protein Structure by Template-Based Modeling Combined with the UNRES Force Field
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Investigation of Protein Folding by Coarse-Grained Molecular Dynamics with the UNRES Force Field
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Performance of protein-structure predictions with the physics-based UNRES force field in CASP11
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Recent improvements in prediction of protein structure by global optimization of a potential energy function
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A comparative study of water distribution and dehydrin protein localization in maturing pea seeds
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Mapping Mechanostable Pulling Geometries of a Therapeutic Anticalin/CTLA-4 Protein Complex
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Research of hydrotronic variable displacement radial piston pump with electro -pneumatic control
PublicationThe paper presents the developed new electro-pneumatic control (pneumotronic) system for hydraulic fixed-displacement radial piston pump. Hydraulic fixed-displacement radial piston pump equipped with the proposed control system changes into hydrotronic variable-displacement radial piston pump. Pump flow rate control is realized by means of programmable logic controller, electro-pneumatic valves, pneumatic cylinders and a sensor.
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Stochastic model of the process of starting piston combustion engines and the practical use of the process
PublicationW artykule zaproponowano model procesu rozruchu silników o zapłonie samoczynnym, w formie procesu semimarkowskiego, dyskretnego w stanach i ciągłego w czasie eksploatacji. Stanami tego procesu są: stan zimny silnika (s1), stan ciepły silnika (s2) i stan gorący silnika (s3). Zaproponowano również koncepcję zastosowania opracowanego modelu do określenia ilości substancji szkodliwych, jakie emitowane są w spalinach podczas rozruchu...
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Molecular dynamics insights into protein‐glycosaminoglycan systems from microsecond‐scale simulations
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Local and long range potentials for heparin‐protein systems for coarse‐grained simulations
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Chromatin-associated microprocessor assembly is regulated by the U1 snRNP auxiliary protein PRP40
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MUTL PROTEIN AS A COMMON CONSTITUENT OF VSP, BER, NER AND MMR REPAIR SYSTEMS
PublicationMutS and MutL proteins are renowned mostly for their functions in well-characterized, post-DNA replication mismatch repair system (MMR). However, there is growing evidence that MMR system is not the only field of action of these proteins. Moreover, involvement in MMR does not even have to be their primary function. There are some reports indicating involvement of MutL in BER, NER and VSP (very short patch repair). MutL protein...
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Depression as is Seen by Molecular Spectroscopy. Phospholipid- Protein Balance in Affective Disorders and Dementia
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A Colorimetric Microplate Assay for DNA-Binding Activity of His-Tagged MutS Protein
PublicationA simple microplate method was designed for rapid testing DNA-binding activity of proteins. The principle of the assay involves binding of tested DNA by his-tagged protein immobilized on a nickel-coated ELISA plate, following colorimetric detection of biotinylated DNA with avidin conjugated to horseradish peroxidase. The method was used to compare DNA mismatch binding activities of MutS proteins from three bacterial species. The...
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General Mechanism of Osmolytes’ Influence on Protein Stability Irrespective of the Type of Osmolyte Cosolvent
PublicationThe stability of proteins in an aqueous solution can be modified by the presence of osmolytes. The hydration sphere of stabilizing osmolytes is strikingly similar to the enhanced hydration sphere of a protein. This similarity leads to an increase in the protein stability. Moreover, the hydration sphere of destabilizing osmolytes is significantly different. These solutes generate in their surroundings so-called “structurally different...
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Justification of quasi-stationary approximation in models of gene expression of a self-regulating protein
PublicationWe analyse a model of Hes1 gene transcription and protein synthesis with a negative feedback loop. The effect of multiple binding sites in the Hes1 promoter as well as the dimer formation process are taken into account. We consider three, possibly different, time scales connected with: (i) the process of binding to/dissolving from a binding site, (ii) formation and dissociation of dimers, (iii) production and degradation of Hes1...
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Valuation method for operation of crankshaft-piston assembly in combustion engines in energy approach
PublicationPrzedstawiono propozycję wartościowania (ilościowego określenia) działania dowolnego układu korbowo-tłokowego silnika o zapłonie samoczynnym, w którym zachodzą oddziaływania energetyczne w określonym czasie. Działanie to rozumiane jest jako przekazywanie odbiornikowi energii w ustalonym czasie, w którym zachodzi przetwarzanie i przenoszenie energii w formie pracy i ciepła. Wartościowanie działania układów korbowo-tłokowych silników...
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Fatty acyl benzamido antibacterials based on inhibition of DnaK-catalyzed protein folding
PublicationWe have reported that the hsp70 chaperone DnaK from Escherichia coli might assist protein folding by catalyzing the cis/trans isomerization of secondary amide peptide bonds in unfolded or partially folded proteins. In this study a series of fatty acylated benzamido inhibitors of the cis/trans isomerase activity of DnaK was developed and tested for antibacterial effects in E. coli MC4100 cells. Nα-[Tetradecanoyl-(4-aminomethylbenzoyl)]-l-asparagine...
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Influence of Properties of Hydraulic Fluid on Pressure Peaks in Axial Piston Pumps’ Chambers
PublicationThe article concentrates on the research of the pressure peaks in a working chamber of an axial piston pump. The main focus of the article is the influence of fluid properties on the pressure peaks value. Experimental and analytical methods were used to determine the impact of the fluid density, viscosity, compressibility and aeration. The article describes the pressure peak generation process and explains the theoretical basis...
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Strong-coupling superconductivity of SrIr2 and SrRh2 : Phonon engineering of metallic Ir and Rh
PublicationExperimental and theoretical studies on superconductivity in SrIr2 and SrRh2 Laves phases are presented. The measured resistivity, heat capacity, and magnetic susceptibility confirm the superconductivity of these compounds with Tc = 6.07 and 5.41 K, respectively. Electronic structure calculations show that the Fermi surface is mostly contributed by 5d (4d) electrons of Ir (Rh), with Sr atoms playing the role of electron donors....
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Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment
PublicationThe UNited RESidue (UNRES) force field was tested in the 14th Community Wide Experiment on the Critical Assessment of Techniques for Protein Structure Prediction (CASP14), in which larger oligomeric and multimeric targets were present compared to previous editions. Three prediction modes were tested (i) ab initio (the UNRES group), (ii) contact-assisted (the UNRES- contact group), and (iii) template-assisted (the UNRES-template...
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How water mediates the long-range interactions between remote protein molecules
PublicationThe high crowding of macromolecules in the cytoplasm affects the processes that occur inside a living cell. It can, for example, promote the forming of various loosely connected structures of proteins. It also means that bulk water is, essentially, not present there. The relatively thin layer of solvent that separates macromolecules may be able to participate in the long-range interactions between them and make them respond to...
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Experimental Research of an Axial Piston Pump with Displaced Swash Plate Axis of Rotation
PublicationThe article describes the influence of displacement of the swash plate rotation axis on the efficiency of axial piston pumps. The dead space volume was defined as the volume of the working chamber in the extreme position of the piston at the end of the pumping phase and its variability was determined as a function of the position of the axis of rotation of the swash plate and the swing angle of swash plate. The influence of swash...
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Chitosan-protein scaffolds loaded with lysostaphin as potential antistaphylococcal wound dressing materials.
PublicationAIMS: The development of technology for preparing chitosan-protein scaffolds loaded with lysostaphin, which potentially could be used as dressing for wound treatment and soft tissue infections caused by Staphylococcus aureus. METHODS AND RESULTS: The unique technology of chitosan solubilization using gaseous CO(2) instead of organic or inorganic acids was used for the incorporation of lysostaphin, the enzyme that exhibits bactericidal...
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Unusual structural properties of water within the hydration shell of hyperactive antifreeze protein
PublicationMany hypotheses can be encountered explaining the mechanism of action of antifreeze proteins. One widespread theory postulates that the similarity of structural properties of solvation water of antifreeze proteins to ice is crucial to the antifreeze activity of these agents. In order to investigate this problem, the structural properties of solvation water of the hyperactive antifreeze protein from Choristoneura fumiferana were...
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Assembly of Lipopolysaccharide in Escherichia coli Requires the Essential LapB Heat Shock Protein
PublicationHere, we describe two new heat shock proteins involved in the assembly of LPS in Escherichia coli, LapA and LapB (lipopolysaccharide assembly protein A and B). lapB mutants were identified based on an increased envelope stress response. Envelope stress responsive pathways control key steps in LPS biogenesis and respond to defects in the LPS assembly. Accordingly, the LPS content in ΔlapB or Δ(lapA lapB) mutants was elevated, with...
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Are stabilizing osmolytes preferentially excluded from the protein surface? FTIR and MD studies
PublicationInteractions between osmolytes and hen egg white lysozyme in aqueous solutions were studied by means of FTIR spectroscopy and molecular dynamics. A combination of difference spectra method and chemometric analysis of spectroscopic data was used to determine the number of osmolyte molecules interacting with the protein, and the preferential interaction coefficient in presented systems. Both osmolytes – L-proline and trimethylamine-N-oxide...
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Materiały ceramiczne w węzłach ciernych protez stawów biodrowych i kolanowych.
PublicationOpisano działania zmierzające do zwiększenia trwałości elementów ciernych protez stawów biodrowych i kolanowych. Działania te nakierowane są na doskonalenie konstrukcji protez, sposobu ich mocowania do kości kończyn oraz poszukiwania nowych materiałów, szczególnie na węzły cierne protez. Opisano aktualnie stosowane skojarzenia materiałowe oraz badania zmierzające do zastosowania nowych, lepszych materiałów. Najkorzystniejsze okazały...
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Adsorption properties of Triton X-100 and rhamnolipid biosurfactant in the contex of soil remediation
PublicationZbadano adsorpcję surfaktantu syntetycznego Triton X-100 i biosurfaktantu z grupy ramnolipidów oraz ich koadsorpcję na granicy faz powietrze/woda oraz olej/woda. Jako fazę organiczną wybrano dodekan oraz syntetyczny olej bazowy na bazie polialfaolefin (PAO). Te same surfaktanty użyto do zbadania zwilżalności powierzchni stałych pokrytych cieńką warstwą substancji hydrofobowej. Na podstawie badań fizykochemicznych nie zauważono...
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Computer Assisted Proof of the Existence of a Periodic Orbit in the Rössler Equations
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A method for analysing ram pressure characteristics of impeller pump rotor
PublicationW pracy przedstawiono metodę wyznaczania kąta wypływu strumienia z wirnika w oparciu o określoną eksperymentalnie charakterystykę ciśnienia w funkcji natężenia przepływu. Metoda może być wykorzystana do określenia kąta napływu na palisadę łopatkową za kołem wirnikowym w sytuacji braku mozliwości jego pomiaru.
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Model of speed-varing rotor for mechatronic systems analysis and design
PublicationW artykule przedstawiono sposób modelowania złożonych układów mechatronicznych w oparciu o metodę grafów wiązań. Celem zilustrowania metody posłużono się przykładem liczbowym, w którym rozważano wirnik obracający się ze zmienną prędkością kątową. Prezentowana metodyka doskonale nadaje się do modelowania układów o zróżnicowanej naturze fizycznej. Otrzymany model ma charakter obiektu o pewnej liczbie wejść i wyjść, który można w...
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Chapter 2: Modelling and analysis of rotor with magnetic bearing system
PublicationThe paper is concerned with rotor magnetic bearing system modelling. Such system is a relatively complex electromechanical system and can be considered as typical mechatronic one. The port-based modelling of physical systems has been used to obtain discrete-continuous model of considered system. Proposed approach enables to obtain reduced low-order lumped parameter representation of the system including gyroscopic interactions....
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Reliability of Ultrasonic Distance Measurement in Application to Multi-Rotor MAVs
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Improving Savonius rotor performance by shaping its blade edges
PublicationThe article presents the results of the numerical analysis of the flow inside the Savonius rotor. Particular at-tention has been paid to the vicinity of the blade gap in order to recognise the mechanisms controlling the flow in this area. The conclusions resulting from the analysis made the basis for an attempt to improve Savonius turbine performance via shaping rotor blade edges. The paper presents selected characteristic flow...
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Broken rotor bar impact on sensorless control of induction machine
PublicationThe aim of the research is analysis of the sensorless control system of induction machine with broken rotor for diagnostic purposes. Increasing popularity of sensorless controlled variable speed drives requires research in area of reliability, range of stable operation, fault symptoms and application of diagnosis methods. T transformation (Cunha et al.,2003) used for conversion of instantaneous rotor currents electrical circuit...
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Law requirements of explosion proof protection at working with chemical substances
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Model of the double-rotor induction motor in terms of electromagnetic differential
PublicationThe paper presents a concept, a construction, a circuit model and experimental results of the double-rotor induction motor. This type of a motor is to be implemented in the concept of the electromagnetic differential. At the same time it should fulfill the function of differential mechanism and the vehicle drive. One of the motor shafts is coupled to the direction changing mechanical transmission. The windings of the external rotor...
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RANS-based design optimization of dual-rotor wind turbines
PublicationPurpose An improvement in the energy efficiency of wind turbines can be achieved using dual rotors. Because of complex flow physics, the design of dual-rotor wind turbines (DRWTs) requires repetitive evaluations of computationally expensive partial differential equation (PDE) simulation models. Approaches for solving design optimization of DRWTs constrained by PDE simulations are investigated. The purpose of this study is to determine...
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Variable-fidelity shape optimization of dual-rotor wind turbines
PublicationPurpose Dual-rotor wind turbines (DRWTs) are a novel type of wind turbines that can capture more power than their single-rotor counterparts. Because their surrounding flow fields are complex, evaluating a DRWT design requires accurate predictive simulations, which incur high computational costs. Currently, there does not exist a design optimization framework for DRWTs. Since the design optimization of DRWTs requires numerous model...
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An Alternative Proof of a Lower Bound on the 2-Domination Number of a Tree
PublicationA 2-dominating set of a graph G is a set D of vertices of G such that every vertex not in D has a at least two neighbors in D. The 2-domination number of a graph G, denoted by gamma_2(G), is the minimum cardinality of a 2-dominating set of G. Fink and Jacobson [n-domination in graphs, Graph theory with applications to algorithms and computer science, Wiley, New York, 1985, 283-300] established the following lower bound on the 2-domination...
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Smooth least absolute deviation estimators for outlier-proof identification
PublicationThe paper proposes to identify the parameters of linear dynamic models based on the original implementation of least absolute deviation estimators. It is known that the object estimation procedures synthesized in the sense of the least sum of absolute prediction errors are particularly resistant to occasional outliers and gaps in the analyzed system data series, while the classical least squares procedure unfortunately becomes...