Filtry
wszystkich: 4330
-
Katalog
- Publikacje 3726 wyników po odfiltrowaniu
- Czasopisma 39 wyników po odfiltrowaniu
- Konferencje 10 wyników po odfiltrowaniu
- Wydawnictwa 1 wyników po odfiltrowaniu
- Osoby 63 wyników po odfiltrowaniu
- Projekty 3 wyników po odfiltrowaniu
- Laboratoria 2 wyników po odfiltrowaniu
- Kursy Online 41 wyników po odfiltrowaniu
- Wydarzenia 5 wyników po odfiltrowaniu
- Dane Badawcze 440 wyników po odfiltrowaniu
wyświetlamy 1000 najlepszych wyników Pomoc
Wyniki wyszukiwania dla: protein folding
-
The effect of topical treatment and psoriasis severity on serum retinol-binding protein-4 levels
Publikacja -
A Data Driven Model for Predicting RNA-Protein Interactions based on Gradient Boosting Machine
Publikacja -
Patients with obstructive sleep apnea present with chronic upregulation of serum HIF-1α protein
Publikacja -
The plasma concentration of advanced oxidation protein products and arterial stiffness in apparently healthy adults
Publikacja -
Novel single-stranded DNA-binding protein from psyvhrophilic bacterium Psychrobacter arcticus
PublikacjaTo study the biochemical properties of SSB from Psychrobacter arcticus (ParSSB), we have cloned the ssb genes obtained by PCR and have developed Escherichia coli overexpression systems. The gene consists of an open reading frame of 642 nucleotides encoding SSB protein of 213 amino acids with a calculated molecular mass of 22.8 kDa. The amino-acid sequence of ParSSB exhibits 49% identity and 57% similarity to Escherichia coli SSB....
-
MIC1-MAG1-SAG1 chimeric protein, a most effective antigen for detection of human toxoplasmosis
PublikacjaThis study describes a Toxoplasma gondii IgG ELISA test based on a new chimeric antigen containing three immunodominant regions from MIC1, MAG1 and SAG1 proteins of a parasite and shows that this test is useful for diagnostic purposes and may replace the lysed and whole-cell antigens.
-
Characterization of Structural and Energetic Differences between Conformations of the SARS-CoV-2 Spike Protein
Publikacja -
Comparison of protein precipitation methods for various rat brain structures prior to proteomic analysis
Publikacja -
Similarities and Differences in the Protein Composition of Cutaneous Melanoma Cells and Their Exosomes Identified by Mass Spectrometry
Publikacja -
Unusual dynamic properties of water near the ice-binding plane of hyperactive antifreeze protein
PublikacjaThe dynamical properties of solvation water of hyperactive antifreeze protein from Choristoneura fumiferana (CfAFP) are analyzed and discussed in context of its antifreeze activity. The protein comprises of three well-defined planes and one of them binds to the surface of ice. The dynamical properties of solvation water around each of these planes were analyzed separately; the results are compared with the dynamical properties...
-
Statistical Method for Analysis of Interactions Between Chosen Protein and Chondroitin Sulfate in an Aqueous Environment
PublikacjaWe present the statistical method to study the interaction between a chosen protein and another molecule (e.g., both being components of lubricin found in synovial fluid) in a water environment. The research is performed on the example of univariate time series of chosen features of the dynamics of mucin, which interact with chondroitin sulfate (4 and 6) in four different saline solutions. Our statistical approach is based on recurrence...
-
Novel thermostable single-stranded DNA-binding protein (SSB) from Deinococcus geothermalis
PublikacjaW celu zbadania właściwości biochemicznych białka wiążącego się do jednoniciowego DNA (SSB) pochodzącego z Deinococcus geothermalis (DgeSSB), sklonowano gen ssb otrzymany w reakcji PCR, a następnie uzyskano wydajną biosyntezę białka DgeSSB. Gen składa się z 900 par zasad, kodujących białko złożone z 300 reszt aminokwasowych, o wyliczonej masie molekularnej równej 32.45 kDa. Sekwencja aminokwasowa wykazuje 43, 44% i 75% identyczności...
-
Expression of goose parvovirus whole VP3 protein and its epitopes in Escherichia coli cells
PublikacjaThe aim of this study was the expression of goose parvovirus capsid protein (VP3) and its epitopes in Escherichia coli cells. Expression of the whole VP3 protein provided an insufficient amount of protein. In contrast, the expression of two VP3 epitopes (VP3ep4, VP3ep6) in E. coli, resulted in very high expression levels. This may suggest that smaller parts of the GPV antigenic determinants are more efficiently expressed than the...
-
Integration of protein tethering in a rapid and label-free SERS screening platform for drugs of abuse
PublikacjaSurface enhanced Raman spectroscopy (SERS) has emerged as a promising technique for the rapid and ultrasensitive detection of molecular species such as drugs of abuse in biofluids. Yet, it remains a significant challenge to create a viable screening tool for multiple drug classes, owing to the lack of affinity of certain species for the SERS substrate and to the matrix interference in complex media. Here we report a protein tethering...
-
A highly thermostable, homodimeric single-stranded DNA-binding protein from Deinococcus radiopugnans
PublikacjaWe report the identification and characterization of the single-stranded DNA-binding protein (SSB) from the mesophile and highly radiation-resistant Deinococcus radiopugnans (DrpSSB). PCR-derived DNA fragment containing the complete structural gene for DrpSSB protein was cloned and expressed in Escherichia coli. The gene consisting of an open reading frame of 900 nucleotides encodes a protein of 300 amino acids with a calculated...
-
Aqueous solutions of NMA, Na2HPO4 , and NaH2PO4 as models for interaction studies in phosphate–protein systems
PublikacjaPhosphate buffers are essential for many areas of studies. However, their influence on buffered systems is often ignored. The phosphate salts can interact with biologically important macromolecules (e.g. proteins) and stabilize or destabilize them. With our research, we want to answer question what kind of interactions, if any, occur between phosphate ions and a protein backbone model — N-methylacetamide (NMA). ATR-FTIR spectroscopy...
-
The Role of Electrostatics in Enzymes: Do Biomolecular Force Fields Reflect Protein Electric Fields?
PublikacjaPreorganization of large, directionally oriented, electric fields inside protein active sites has been proposed as a crucial contributor to catalytic mechanism in many enzymes, and it may be efficiently investigated at the atomistic level with molecular dynamics simulations. Here, we evaluate the ability of the AMOEBA polarizable force field, as well as the additive Amber ff14SB and Charmm C36m models, to describe the electric...
-
A Data Driven Model for Predicting RNA-Protein Interactions based on Gradient Boosting Machine
PublikacjaRNA protein interactions (RPI) play a pivotal role in the regulation of various biological processes. Experimental validation of RPI has been time-consuming, paving the way for computational prediction methods. The major limiting factor of these methods has been the accuracy and confidence of the predictions, and our in-house experiments show that they fail to accurately predict RPI involving short RNA sequences such as TERRA RNA....
-
Proteolysis of whey protein isolates in nanoemulsion systems: impact of nanoemulsification and additional synthetic emulsifiers
PublikacjaNanoemulsions are currently of interest in the functional food sector because their small droplet size (100–500 nm) provides a number of potential advantages over conventional emulsions. This study concerned the behavior of nanoemulsions stabilized with whey proteins and two synthetic emulsifiers (Tween 80 and Croduret), and exposed to conditions simulating the human upper gastrointestinal tract. In particular, the effect of synthetic...
-
ESCASA : Analytical estimation of atomic coordinates from coarse‐grained geometry for nuclear‐magnetic‐resonance ‐assisted protein structure modeling. I. Backbone and Hβ protons
PublikacjaA method for the estimation of coordinates of atoms in proteins from coarse-grained geometry by simple analytical formulas (ESCASA), for use in nuclear-magnetic-resonance (NMR) data-assisted coarse-grained simulations of proteins is proposed. In this paper, the formulas for the backbone Hα and amide (HN) protons, and the side-chain Hβ protons, given the Cα-trace, have been derived and parameterized, by using the interproton distances...
-
Aravind Ayyolath
OsobyI am interested in the biology of bacterial stress response and its growth under stress conditions. Our lab focuses on two aspects; protein folding and lipopolysaccharide biosynthesis and we address them with Escherichia coli models. Our recent studies have provided more evidence regarding several genes involved in the survival of bacteria under stress. I am also interested in disease biology and also in identifying proper therapeutic...
-
Artificial neural network based fatigue life assessment of friction stir welding AA2024-T351 aluminum alloy and multi-objective optimization of welding parameters
PublikacjaIn this paper, the fracture behavior and fatigue crack growth rate of the 2024-T351 aluminum alloy has been investigated. At first, the 2024-T351 aluminum alloys have been welded using friction stir welding procedure and the fracture toughness and fatigue crack growth rate of the CT specimens have been studied experimentally based on ASTM standards. After that, in order to predict fatigue crack growth rate and fracture toughness,...
-
Resistance of Polypropylene Membrane to Oil Fouling during Membrane Distillation
Publikacja -
Fouling of nanofiltration membranes used for separation of fermented glycerol solutions
Publikacja -
Long-Term Performance of Ultrafiltration Membranes: Corrosion Fouling Aspect
Publikacja -
Bonding of doxorubicin to nanosilica and human serum albumin in various media
Publikacja -
A polynomial algorithm for solving a general max‐min fairness problem
Publikacja -
Numerical Simulations of Laser and Hybrid S700MC T-Joint Welding
Publikacja -
Computational Techniques in Numerical Simulations of Arc and Laser Welding Processes
Publikacja -
APPLICATION OF NUMERICAL SIMULATIONS ON X10CRWMOVNB9-2 STEEL MULTILAYER WELDING
Publikacja -
Enzymatic Activity as New Moorsh-Forming Process Indicators of Peatlands
Publikacja -
Reproducibility of Finding Enriched Gene Sets in Biological Data Analysis
Publikacja -
Study of the process of tool forming made of high-strength materials
Publikacja -
Modelling of the Heat Flux Density Distribution for Laser Beam Welding
PublikacjaGreat interest of the laser beam welding in industry is a new theoretical task, making planning the welding procedure specification and the quality control of welded joints easier. Estimating and calculating the dimensions of a weld pool and temperature distribution near weld mainly concern heat source modelling. In the presented work calculations of welding pool shape and thermal field for cylindrical-powered-normally model of...
-
The Effect of Welding Conditions on Diffusible Hydrogen Content in Deposited Metal
PublikacjaThe article presents the results of a literature survey and preliminary tests which set out effects of welding conditions on the amount of diffusible hydrogen in deposited metal. Experiments were conducted by using rutile coated electrodes which generate high contents of diffusible hydrogen in deposited metal. The amount of diffusible hydrogen was determined by a glycerin test.Eleven factors were considered: the electrode angle,...
-
Diffusible Hydrogen Control in Flux Cored Arc Welding Process
PublikacjaOne of the types of hydrogen degradation of steel welded joints is cold cracking. The direct cause of the formation of cold cracks is simultaneous presence of hydrogen, residual stresses and brittle structure. The way of preventing the occurring of degradation is to eliminate at least one of these factors. Practice has shown that the best solution is to control the amount of hydrogen in deposited metal. In this paper an experimental...
-
Reduction of Tire Rolling Resistance by Optimization of Road Surfaces and Tires
PublikacjaDuring interaction between tire and road surface three very important phenomena are always in effect. One of them (very desirable) is friction that is important for traction, braking and cornering. Two other phenomena are not desirable at all, that is rolling resistance and noise. This paper discusses relations between road surface and tire parameters versus tire rolling resistance. Road surface texture, porosity, impedance, strength...
-
AC motor feeding cable consequences on EMC performance of ASD
PublikacjaHigh level of conducted EMI emissions of adjustable speed drives (ASD) is one of the most difficult problems in contemporary applications. Many investigations are carried out in order to find more effective methods allowing to predict this emission at early stage of design, and therefore to predict adequate countermeasures. This paper deals with the method which allows to estimate by simulation the influence of motor feeding cable...
-
Impact of the surface evenness and texture on tire/road rolling resistance
PublikacjaThis paper deals with the issue of a surface's roughness and texture impact on tire/road rolling resistance. It includes a brief description of research aims, measurements and an analysis of results. It also presents observations and conclusions regarding drum facility modernisation which allows studies concerning surface's roughness and texture impact on tire/road rolling resistance.
-
Destructive Consequences of PWM Inverter Feeding for Traction AC Motors
PublikacjaThe electric traction drives with an AC motor fed by a frequency converter are used more and more often nowadays. The most significant side effects, of a converter's output voltage forming PWM method for AC motor windings, are steep voltage changes, which can initiate several destructive phenomena. The paper presents the adverse influence of a converter common mode voltage on the motor windings' increased voltage exposure and the...
-
Variational Method of Finding Streamlines in Ring Cascades for Creeping Flows
PublikacjaThis paper presents a new, analytical method of finding streamlinesfor creeping flows inside a ring cascade which is composed of an infinite number of infinitely thin blades. An analytical solution has been obtained through minimisation of a dissipation functional by means of variational calculus method. The necessary condition for optimum of a functional gives the Stokes equation if some additional assumptions are introduced....
-
Vibration Diagnostics of Rolling Mills Based on Nonlinear Effects in Dynamics
Publikacja -
NMR and MD Analysis of the Bonding Interaction of Vancomycin with Muramyl Pentapeptide
Publikacja -
Moderately Reactive Molecules Forming Stable Ionic Compounds with Superhalogens
Publikacja -
Filling of Carbon Nanotubes: Containers for Magnetic Probes and Drug Delivery
Publikacja -
Mechanical Properties of Polyester Coated Fabric Subjected to Biaxial Loading
PublikacjaThe paper is focused on the comparison between uniaxial and biaxial laboratory test results for polyester coated fabric. A short literature review concerning coated woven fabrics with emphasis on biaxial tensile tests is presented. A description of the polyester-coated fabric under biaxial test by means of constitutive models and material parameter values is proposed. To establish the right values of the ultimate tensile strength,...
-
Reduction of noise and rolling resistance by horizontal grinding of asphalt pavements
PublikacjaGrinding of cement concrete pavements to reduce unevenness and noise is common since a long time. Grinding is then made with wheels equipped with diamond blades rotating in the vertical plane. This creates narrow vertical/longitudinal grooves in the pavement. It is not applied to asphalt pavements. In this paper an alternative type of grinding is studied. In this case plates with diamond heads rotate in the same plane as the pavement,...
-
Geometrical versus analytical approach in problem solving- an exploatory study
PublikacjaAbstract. In this study we analyse the geometrical visualization as a part of the process of solution. In total 263 students in the first year of study at three different universities in three different countries (Poland, Slovakia and Spain) were asked to solve four mathematical problems. The analysis of the results of all students showed that geometrical visualization for problems where there is a possibility to choose different ways...
-
Data Extraction, Transformation and Loading process in data warehouse development.
PublikacjaOmówiono podstawowe elementy procesu projektowania hurtowni danych.
-
Solving nonlinear programming problems by using O&G software.
PublikacjaPraca opisuje pakiet optymalizacyjny oprogramowania O&G. Umożliwia on rozwiązywanie problemów programowania nieliniowego. Użytkownik może w wygodny sposób formułować rozwiązywane zadanie i dobierać metody obliczeniowe używając interaktywnego interfejsu.