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Search results for: ac
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Counter-ion effect on antistaphylococcal activity and cytotoxicity of selected antimicrobial peptides
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Characterization of antimicrobial and hemolytic properties of short synthetic cationic lipopeptides based on QSAR/QSTR approach
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Taurine as a water structure breaker and protein stabilizer
PublicationThe enhancing effect on the water structure has been confirmed for most of the osmolytes exhibiting both stabilizing and destabilizing properties in regard to proteins. The presented work concerns osmolytes, which should be classified as “structure breaking” solutes: taurine and N,N,N-trimethyltaurine (TMT). Here, we combine FTIR spectroscopy, DSC calorimetry and DFT calculations to gain an insight into the interactions between...
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Hydration of amino acids: FTIR spectra and molecular dynamics studies
PublicationThe hydration of selected amino acids, alanine, glycine, proline, valine, isoleucine and phenylalanine, has been studied in aqueous solutions by means of FTIR spectra of HDO isotopically diluted in H2O. The difference spectra procedure and the chemometric method have been applied to remove the contribution of bulk water and thus to separate the spectra of solute-affected HDO. To support interpretation of obtained spectral results,...
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Inhibitors of amino acids biosynthesis as antifungal agents
PublicationFungal microorganisms, including the human pathogenic yeast and filamentous fungi, are able to synthesize all proteinogenic amino acids, including nine that are essential for humans. A number of enzymes catalyzing particular steps of human-essential amino acid biosynthesis are fungi specific. Numerous studies have shown that auxotrophic mutants of human pathogenic fungi impaired in biosynthesis of particular amino acids exhibit...
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Synthesis of orthogonally protected (3R,4S)- and (3S,4S)-4,5-diamino-3-hy-droxypentanoic acids.
PublicationDwa tytułowe aminokwasy otrzymano z odpowiednich kwasów (S)-2,3-diaminopropanowych. Konfigurację absolutną ustalono za pomocą spektroskopii NMR odpowiednich piperydyno-2-onów.
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Plasma free amino acid profiling as metabolomic diagnostic and prognostic biomarker in paediatric cancer patients: a follow‑up study
PublicationAmino acids (AAs) play a crucial role in cancer cell metabolism. Levels of 22 plasma AAs at the time of diagnosis and after treatment were established among 39 pediatric cancer patients and 33 healthy children. Glutamic acid levels decreased and tryptophan levels increased during treatment. Cancer patients presented significantly lower levels of glutamine and leucine post-treatment while levels of 12 other AAs were higher comparing...
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Molecular targets for antifungals in amino acid and protein biosynthetic pathways
PublicationFungi cause death of over 1.5 million people every year, while cutaneous mycoses are among the most common infections in the world. Mycoses vary greatly in severity, there are long-term skin (ringworm), nail or hair infections (tinea capitis), recurrent like vaginal candidiasis or severe, life-threatening systemic, multiorgan infections. In the last few years, increasing importance is attached to the health and economic problems...
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Rosyjskie piśmiennictwo naukowe z zakresu przekładoznawstwa. Rzecz o monografii bibliograficznej Ewy Konefał pt. Przekładoznawstwo rosyjskie. Tom 1: Autoreferaty dysertacji 1937–2015 (Wydawnictwo Uniwersytetu Gdańskiego, Gdańsk 2016) [Russian academic literature in the field of translation studies. About Eva Konefał’s bibliographic monograph Russian translation studies. Volume 1: Abstracts of dissertations 1937-2015 (Publishing house of Gdansk University, Gdansk 2016)]
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A review of explainable fashion compatibility modeling methods
PublicationThe paper reviews methods used in the fashion compatibility recommendation domain. We select methods based on reproducibility, explainability, and novelty aspects and then organize them chronologically and thematically. We presented general characteristics of publicly available datasets that are related to the fashion compatibility recommendation task. Finally, we analyzed the representation bias of datasets, fashion-based algorithms’...
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КОНЦЕПТУАЛІЗАЦІЯ ПОНЯТТЯ ІНСТИТУТ РИНКУ СТРАХОВИХ ПОСЛУГ НА ОСНОВІ НЕОКЛАСИЧНОЇ ЕКОНОМІКИ
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How to stop salami science: promotion of healthy trends in publishing behavior
PublicationThe career of scientists often depends on the number of their published works. This fact leads to the overproduction of low quality papers burying the important articles and making the knowledge less accessible. One of the methods to counteract these negative aspects might lie in the promotion of healthy trends in publishing behavior. In the present work, the theoretical analysis of a new bibliometric measure is presented, and...
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Investigation of influence of space mopdes interaction on nonlinear dynamics of sound beams
PublicationOperatory rzutu na mody są zdefiniowane w dynamice płynów trójwymiarowych. Zostały wyprowadzone równania ewolucyjne. Rezultaty obliczeń numerycznych przedstawione.
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Adaptive neuro fuzzy and fuzzy decision tree classifiers as applied to sea floor characterization.
PublicationPrzedstawiono wyniki badań wpływu różnych parametrów echa odbitego od dna morskiego na dokładność klasyfikacji typu dna przy pomocy sieci neuronowej z logiką rozmytą i przy pomocy drzew decyzyjnych. W szczególności uwzględniono takie parametry echa jak: energia, amplituda i nachylenie opadającego zbocza, wzbogacone o współczynniki falkowe otrzymane z dyskretnej transformacji falkowej (DWT).
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Fish target strength estimation using multiple echo statistics
PublicationW pracy przedstawiono sposób określania statystycznych właściwości charakterystyki wiązki systemu hydroakustycznego z uwzględnieniem możliwości pojawienia się echo wielokrotnych od jednej ryby. Przedstawiono modele obejmujące dwa teoretyczne przypadki związane z wzajemnym ruchem statku i pojedynczej ryby i pokazano, że posiadają one zbliżone właściwości statystyczne. Rozważania teoretyczne potwierdzone są analizą przykładowych...
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Determining ATP concentration in Candida albicans in process of forming germ tube forms
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Ocena stanu antyoksydacyjnego w wybranych chorobach układowych tkanki łącznej
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Cadmium and lead content in gluten and gluten-free bread available on the Polish market – potential health risk to consumers
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Księgozbiór profesora Michała Reichera: struktura zasobu
PublicationCel pracy Celem niniejszej pracy jest przeprowadzenie analizy zachowanej części księgozbioru prof. M. Reichera zgodne z funkcjonalną koncepcją książki, wedle której daną kolekcję interpretować należy jako wyraz nie tylko zainteresowań i praktyk czytelniczych, ale jako część procesu społecznego komunikowania, rozumianego tutaj jako możność stworzenia kolekcji (kwestie rynku książki) i nadania jej wartości w obiegu informacji naukowej. Materiał...
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Zastosowanie techniki ekstrakcji na fazie stałej (SPE) do zagęszczania wielopierścieniowych węglowodorów aromatycznych z płynów stosowanych w infuzji przy oznaczaniu tych związków techniką HPLC z detektorem fluorescencyjnym i diodowym
PublicationPraca zawiera metodykę przygotowania próbki oraz procedurę analityczną oznaczania obecności wielopierścieniowych węglowodorów aromatycznych (WWA) w płynach infuzyjnych stosowanych do wlewów dożylnych dla ludzi oraz wyniki badań stężeń tych węglowodorów w płynach stosowanych do infuzji oraz w stosowanych do produkcji płynów infuzyjnych - substancjach farmaceutycznych. W płynach do infuzji stwierdzono 0,2-7,6 ng/l Benzo(a)pirenu,...
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Pomiary impedancji szkliwa zębów w zakresie niskiej częstotliwości.
PublicationCelem pracy była ocena in vitro wartości impedancji szkliwa zębów w zakresie niskiej częstotliwości oraz zmian impedancji pod wpływem wilgotności. Pomiarami objęto szkliwo bez zmian, szkliwo z pęknięciami oraz obszary zmienione w wyniku demineralizacji i próchnicy. Wyznaczono zakres zmian impedancji w wymienionych przypadkach.
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The UK's banking system as financial hub for Islamic banking
PublicationThis paper examines the phenomenon of London as "the Islamic banking hub". It contends that London has become not only an international centre for Islamic finance, but also that there is big interest and demand for Islamic banking products. The authors are also positive that Islamic banking may be a certain solution for the problems that Europe has been suffering since 2007 when the global debt crisis started. Our intention is...
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The impact of China’s One-Belt One-Road initiative on international trade and global value chains
PublicationThis study examines the potential effects of China’s ‘One-Belt One-Road’initiative (OBOR) on trade flows and global value chain (GVC) connections.The empirical analysis is based on the augmented trade gravity model, which comprises 186 economies and 199 of their partners from 2000 to 2018. We also estimate the gravity model for involvement in GVC (domestic value added in intermediate exports, foreign value added in exports, and...
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Types of convictions concerning coping with pain of the participants of territory defence activities
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Awareness of patients suffering from selected chronic diseases of the importance of physical activity in treating their disorders
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Health in the context of martial arts practice
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Selected problems of the relation between pain-immunity and depression
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The influence of effective distance on the impact of a punch - Preliminary Analysis
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Weathering Resistance of Waterborne Polyurethane Coatings Reinforced with Silica from Rice Husk Ash
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Isolation and identification of the restriction endonuclease Ptal fromPhormidium tadzschicicum, an isoschizomer of BspMII
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Targeted DNA oxidation by LSD1–SMAD2/3 primes TGF-β1/ EMT genes for activation or repression
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Endogenous oxidative DNA base modifications analysed with repair enzymes and GC/MS technique
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UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamics
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H2AX phosphorylation, its role in DNA damage response and cancer therapy
PublicationDouble-strand breaks (DSBs) are the most deleterious DNA lesions, which, if left unrepaired, may have severe consequences for cell survival, as they lead to chromosome aberrations, genomic instability, or cell death. Various physical, chemical, and biological factors are involved in DSB induction. Cells respond to DNA damage by activating the so-called DNA damage response (DDR), a complex molecular mechanism developed to detect...
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The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana
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The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana
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SERRATE interacts with the nuclear exosome targeting (NEXT) complex to degrade primary miRNA precursors in Arabidopsis
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How proteins bind to DNA: target discrimination and dynamic sequence search by the telomeric protein TRF1
PublicationTarget search as performed by DNA-binding proteins is a complex process, in which multiple factors contribute to both thermodynamic discrimination of the target sequence from overwhelmingly abundant off-target sites and kinetic acceleration of dynamic sequence interrogation. TRF1, the protein that binds to telomeric tandem repeats, faces an intriguing variant of the search problem where target sites are clustered within short fragments...
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TspGWI, a thermophilic class-IIS restriction endonuclease from Thermus sp.,recognizes novel asymmetric sequence 5´-ACGGA(N11/9)-3
PublicationA novel prototype class-IIS restriction endonuclease, TspGWI, was isolated from the thermophilic bacterium Thermus sp. GW. The recognition sequence and cleavage positions have been established: TspGWI recognizes the non-palindromic 5-bp sequence 5′-ACGGA-3′ and cleaves the DNA 11 and 9 nt downstream in the top and bottom strand, respectively. In addition, an accompanying endonuclease, TspGWII, an isoschizomer of Pst I, was found...
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A new Thermus sp. class-IIS enzyme subfamily: isolation of a ''twin'' endo nuclease TspDTI with a novel specificity 5´-ATGAA(N11/9)-3´, related to TspGWI, Taqll and Tth111II. 5´-ATGAA(N11/9)-3´, spokrewnionej z TspGWI, TaqII i Tth111II.
PublicationOdkryto i scharakteryzowano nową subrodzinę enzymów klasy IIS z Thermus sp.
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Molecular dynamics simulations reveal the balance of forces governing the formation of a guanine tetrad—a common structural unit of G-quadruplex DNA
PublicationG-quadruplexes (G4) are nucleic acid conformations of guanine-rich sequences, in which guanines are arranged in the square-planar G-tetrads, stacked on one another. G4 motifs form in vivo and are implicated in regulation of such processes as gene expression and chromosome maintenance. The structure and stability of various G4 topologies were determined experimentally; however, the driving forces for their formation are not fully...
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Defining a novel domain that provides an essential contribution to site-specific interaction of Rep protein with DNA
PublicationAn essential feature of replication initiation proteins is their ability to bind to DNA. In this work, we describe a new domain that contributes to a replication initiator sequence-specific interaction with DNA. Applying biochemical assays and structure prediction methods coupled with DNA–protein crosslinking, mass spectrometry, and construction and analysis of mutant proteins, we identified that the replication initiator of the...
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DNAffinity: a machine-learning approach to predict DNA binding affinities of transcription factors
PublicationWe present a physics-based machine learning approach to predict in vitro transcription factor binding affinities from structural and mechanical DNA properties directly derived from atomistic molecular dynamics simulations. The method is able to predict affinities obtained with techniques as different as uPBM, gcPBM and HT-SELEX with an excellent performance, much better than existing algorithms. Due to its nature, the method can...
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A game-theoretic study of CSMA/CA under a backoff attack
PublicationAnalizowany jest rozdział pasma realizowany przez protokół CSMA/CA w obecności anonimowych stacji egoistycznych, atakujących wykładniczy mechanizm odczekania. Przy założeniu ruchu nasycającego sieć pokazuje się, że powstaje w ten sposób niekooperacyjna gra o strukturze wypłat wieloosobowego dylematu więźnia. Wykorzystując własności macierzy wypłat zaproponowano strategię dla odpowiedniej gry wieloetapowej, zapewniającą asymptotyczne...
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Complex Root Finding Algorithm Based on Delaunay Triangulation
PublicationA simple and flexible algorithm for finding zeros of a complex function is presented. An arbitrary-shaped search region can be considered and a very wide class of functions can be analyzed, including those containing singular points or even branch cuts. The proposed technique is based on sampling the function at nodes of a regular or a self-adaptive mesh and on the analysis of the function sign changes. As a result, a set of candidate points...
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Using Evidence-based Arguments to Support Dependability Assurance - Experiences and Challenges
PublicationThe presentation introduces to the problem of evidence-based arguments and their applications. Then, based on the experiences collected during development and commercial deployment of a concrete solution to this problem (system NOR-STA) we overview selected challenges and the ways of addressing them.
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Time-domain measurement methods for R, L and C sensors based on aversatile direct sensor-to-microcontroller interface circuit
PublicationtIn the paper new time-domain measurement methods for determining values of resistive (R), inductive(L) and capacitive (C) sensors based on a versatile direct sensor-to-microcontroller interface for microcon-trollers with internal analog-to-digital converters (ADCs) and analog comparators (ACs) are presented.The interface circuit consists of a reference resistor Rrworking as a voltage divider, a given R, L or C sensorand a microcontroller...
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Molecular Modelling of the Neurophysin II/Vasopressin Complex
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VIBRATION SURVEILLANCE DURING MILLING OF FLEXIBLE DETAILS WITH A USE OF THE ACTIVE OPTIMAL CONTROL
PublicationThe main goal of modern machining operations is to achieve increasingly better performance. High Speed Machining and/or High Performance Cutting, despite a lot of advantages, have also some drawbacks, for example, a possibility of losing stability and development of self-excited chatter vibration. This paper presents an approach of vibration surveillance during high speed milling with a use of active optimal control. Non-stationary...
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Development of the urban rail vehicle acoustic model
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