Filters
total: 739
filtered: 594
-
Catalog
Chosen catalog filters
Search results for: DRA GENE CLUSTER
-
A new cold-active β-galactosidase from Arthrobacter sp. S3* - gene cloning, overexpression, purification and properties
PublicationA psychrotrophic bacterium producing a cold-active β-galactosidase was isolated from Spitsbergen soil and classified as Arthrobacter sp. S3*. The gene encoding β-galactosidase was isolated from the genomic DNA library, sequenced, cloned, expressed in Escherichia coli, purified by ion exchange chromatography and characterized. The Arthrobaster sp. S3* β-galactosidase is a homotrimeric enzyme composed of 74,4 kDa subunits. It is...
-
Electronically Excited States in Solution via a Smooth Dielectric Model Combined with Equation-of-Motion Coupled Cluster Theory
PublicationWe present a method for computing excitation energies for molecules in solvent, based on the combination of a minimal parameter implicit solvent model and the equation-of-motion coupled-cluster singles and doubles method (EOM-CCSD). In this method, the solvent medium is represented by a smoothly varying dielectric function, constructed directly from the quantum mechanical electronic density using only two tunable parameters. The...
-
Development of cluster analysis methodology for identification of model rainfall hyetographs and its application at an urban precipitation field scale
PublicationDespite growing access to precipitation time series records at a high temporal scale, in hydrology, and particularly urban hydrology, engineers still design and model drainage systems using scenarios of rainfall temporal distributions predefined by means of model hyetographs. This creates the need for the availability of credible statistical methods for the development and verification of already locally applied model hyetographs....
-
Iron–Sulfur Cluster Biogenesis Chaperones: Evidence for Emergence of Mutational Robustness of a Highly Specific Protein–Protein Interaction
PublicationBiogenesis of iron–sulfur clusters (FeS) is a highly conserved process involving Hsp70 and J-protein chaperones. However, Hsp70 specialization differs among species. In most eukaryotes, including Schizosaccharomyces pombe, FeS biogenesis involves interaction between the J-protein Jac1 and the multifunctional Hsp70 Ssc1. But, in Saccharomyces cerevisiae and closely related species, Jac1 interacts with the specialized Hsp70 Ssq1,...
-
NADPH Oxidase Gene Polymorphism is Associated with Mortality and Cardiovascular Events in 7-Year Follow-Up
PublicationThe CYBA gene encodes the regulatory subunit of NADPH oxidase, which maintains the redox state within cells and in the blood vessels. That led us to investigate the course of coronary artery disease (CAD) with regards to CYBA polymorphisms. Thus, we recruited 1197 subjects with coronary atherosclerosis and observed them during 7-year follow-up. Three CYBA polymorphisms: c.214C>T (rs4673), c.-932G>A (rs9932581), and c.*24G>A (1049255)...
-
Cluster-dependent rotation-based feature selection for the RBF networks initialization
Publication -
Towards Efficient Parallel Image Processing on Cluster Grids Using GIMP.
PublicationZe względu na fakt, iż niewielu użytkowników posiada wiedzę niezbędną do wykorzystania niskopoziomowych bibliotek programowania równoległego w celu przyspieszenia działania programów operujących na obrazach, proponujemy plugin do znanej aplikacji GIMP, który umożliwia potokowe wykonanie szeregu filtrów na obrazach załadowanych przez plugin. Prezentujemy szczegóły implementacyjne, scenariusze testowe i wyniki na klastrach, potencjalnie...
-
Coupled cluster and DFT calculations of 14N nuclear quadrupole coupling constants
Publication -
Application of principal component and hierarchical cluster analysis in classifying defects of trolleybuses
PublicationThe failure rate of vehicles is a relevant task, which is strictly connected with the reliability of transportation systems. Methods of data analysis allow us to find similarity and differences between failure rates of several parts of trolleybuses. This paper deals with the statistic of failure of trolleybuses from the municipal transport company of Gdynia (Poland).
-
A Model of Thermally Activated Molecular Transport: Implementation in a Massive FPGA Cluster
Publication -
Untargeted Lipidomics Analysis of the Cyanobacterium Synechocystis sp. PCC 6803: Lipid Composition Variation in Response to Alternative Cultivation Setups and to Gene Deletion
PublicationCyanobacteria play an important role in several ecological environments, and they are widely accepted to be the ancestors of chloroplasts in modern plants and green algae. Cyanobacteria have become attractive models for metabolic engineering, with the goal of exploring them as microbial cell factories. However, the study of cyanobacterial lipids’ composition and variation, and the assessment of the lipids’ functional and structural...
-
Cognitive decline in Huntington's disease expansion gene carriers
Publication -
Circadian Gene Polymorphisms Associated with Breast Cancer Susceptibility
Publication -
Gene copy numbers of HER family in breast cancer
Publication -
Estrogen Receptor 2 Gene Polymorphism in Idiopathic Scoliosis
Publication -
CHD7 gene polymorphisms in female patients with idiopathic scoliosis
Publication -
Gene-based identification of bacterial colonies with an electric chip
Publication -
Cluster donation: How medical students bound certain types of tissues and biomedical research and how it affects their willingness to donate.
PublicationAlthough biomedical research requires cooperation with a large number of donors, its success also depends on the input of healthcare professionals who play a crucial role in promoting biomedical research and influencing an individual’s decision to donate one’s biospecimens that are left over after a medical procedure. This work was aimed at investigating the correlation between medical and healthcare students’ willingness to...
-
A new assay based on terminal restriction fragment length polymorphism of homocitrate synthase gene fragments for Candida species identification
PublicationCandida sp. have been responsible for an increasing number of infections, especially in patients with immunodeficiency. Species specific differentiation of the Candida sp. is difficult in routine diagnosis. This identification can have a highly significant association in therapy and prophylaxis. This work has shown a new application of terminal restriction fragment length polymorphism (t-RFLP) method in molecular identification...
-
Task Allocation and Scalability Evaluation for Real-Time Multimedia Processing in a Cluster Envirinment
PublicationAn allocation algorithm for stream processing tasks is proposed (Modified best Fit Descendent, MBFD). A comparison with another solution (BFD) is provided. Tests of the algorithms in an HPC environment are descrobed and the results are presented. A proper scalability metric is proposed and used for the evaluation of the allocation algorithm.
-
<title>Management system of ELHEP cluster machine for FEL photonics design</title>
Publication -
Cancer Familial Aggregation (CFA) and G446A polymorphism in ARLTS1 gene
Publication -
Reproducibility of Finding Enriched Gene Sets in Biological Data Analysis
Publication -
Ranking metrics in gene set enrichment analysis: do they matter?
Publication -
Newborn screening and gene therapy in SMA: Challenges related to vaccinations
Publication -
Delay induced oscillations in gene expression of Hes1 protein model
PublicationW pracy został omówiony model produkcji białka Hes1. Stężenie Hes1 jest kontrolowane przez ujemne sprzężenie zwrotne wbudowane w białko i jego mRNA. Przeprowadzona analiza potwierdziła znane wyniki numeryczne, że oscylacje wywołane są przez opóźnienie. Pokazaliśmy również, że jeśli współczynnik Hilla jest większy niż 1, to istnieje krytyczna wartość opóźnienia, dla której ma miejsce bifurkacja Hopfa i pojawiają się rozwiązania...
-
Vitamin D receptor gene polymorphisms in Alzheimer's disease patients
Publication -
Beta-2 adrenoreceptor gene polymorphisms and sympathetic outflow in humans
Publication -
Amplification of erbB-4 oncogene occurs less frequently than that of erbB-2 in primary human breast cancer1Published in conjunction with A Wisconsin Gathering Honoring Waclaw Szybalski on the occasion of his 75th year and 20 years of Editorship-in-Chief of Gene, 10–11 August, 1997, University of Wisconsin, Madison, WI, USA.1
Publication -
Identyfikacja i izolacja genu kodującego zaadaptowaną do zimna β-galaktozydazę Paracoccus sp. = Identification and izolation of the gene encoding cold-active β-galactosidase from paracoccus sp.
PublicationZaprezentowane badania były prowadzone u eehi wyizolowania ze środo¬wiska organizmu psychrofilnego, zdolnego do hydrolizy laktozy w niskiej tempe¬raturze, oraz zidentyfikowania genu kodującego (i-galaktozydazę zaadaptowaną do zimna.Poszukiwan gen został w izolowany z psychrofilnego szczepu autarkicz¬nego Paracoccus sp. 321). Na podstawie sekwencji nukleotydowej genu kodują¬cego fS-galaktozdaze ustalono skład aminokwasów),...
-
Remote task submission and publishing in BeesyCluster: security and efficiency of Web Service interface
PublicationPrezentujemy nowy system BeesyCluster, który stanowi łatwy w użyciu portal dostępowy do rozszerzalnej sieci usług wdrożonych i opublikowanych na klastrach/komputerach PC z wirtualnymi płatnościami za wykorzystanie usług. Administratorzy/użytkownicy mogą dołączać klastry/komputery PC dostępne poprzez SSH kliknięciem myszy bez konieczności dalszej konfiguracji na klastrze/komputerze PC udostępniającego. Ponadto, użytkownicy mogą...
-
Experimental Evaluation of the Agent-Based Population Learning Algorithm for the Cluster-Based Instance Selection
Publication -
Influence of ice concentration and floe-size distribution on cluster formation in sea-ice floes
Publication -
Równoległe obliczenia grup podobieństw dla wielowymiarowych danych w środowisku Beesy Cluster
PublicationOpisano podejście do analizy danych opartej na grupowaniuelementów podobnych do siebie. Przedstawiono realizację tego zadania z użyciem jednego z najprostszych algorytmów, dla którego dokonano zrównoleglenia podstawowej operacji wyznaczania podobieństwa stanowiącej najbardziej kosztowny element algorytmu. Przedstawiono opis dystrybucji zadań, metodą obliczania podobieństwa i sposób składowania danych wyjściowych. Zaprezentowano...
-
Synthesis, structure and magnetic properties of neutral Ni(II) tri-tert-butoxysilanethiolate cluster
PublicationNowy klaster niklu(II) [Ni6(μ-O)6{SSi(tBuO)3}6(H2O)6(NH3)4] został otrzymany w reakcji NiCl2·6H2O z tri-tert-butoksysilanotiolu i amoniakiem w roztworze wodnym. Pomiary właściwości magnetycznych badanego związku pokazują obecność silnych antyferromagnetycznych oddziaływań pomiędzy centrami metalicznymi.
-
Theoretical calculation of pKas of phosphoric (V) acidin the polarisable continuum and cluster-continuum models
PublicationW pracy oceniono dokładność modelu polaryzowalnego kontinuum (PCM) i mieszanego modelu klaster-kontinuum do przewidywania wartości trzech kolejnych stałych dysocjacji kwasu fosforowego (V). Obliczenia PCM na poziomie MP2/6-31+G(d,p) odtwarzają wartość pierwszego pKa z rozsądną niepewnością, jednak wartości kolejnych pKa obarczone są bardzo dużym błędem, nawet po podniesieniu poziomu teorii do metody zespolonej G3B3. Dopiero obliczenia...
-
First recurrent large genomic rearrangement in the BRCA1 gene found in Poland
Publication -
Robustness of Pathway Enrichment Analysis to Transcriptome-Wide Gene Expression Platform
Publication -
Statistical Integration of p-values for Enhancing Discovery of Radiotoxicity Gene Signatures
Publication -
Iron overload and HFE gene mutations in Polish patients with liver cirrhosis
Publication -
K-ras gene mutation as an early prognostic marker of colon cancer
Publication -
Vitamin D Metabolism Gene Polymorphisms and Their Associated Disorders: A Literature Review
Publication -
Clinical presentation of Y189C mutation of the NOTCH3 gene in the Polish family with CADASIL
Publication -
Stability of delay induced oscillations in gene expression of Hes1 protein model
PublicationW pracy prezentowana jest matematyczna analiza modelu ekspresji genu białka Hes1. Rozważamy układ równań z dwoma opóźnieniami - w produkcji białka Hes1 oraz jego mRNA. Dowodzimy istnienia i jednoznaczności oraz nieujemności rozwiązań. Pokazujemy istnienie dokładnie jednego dodatniego stanu stacjonarnego. Wykazujemy, że stabilność stanu stacjonarnego zależy od sumy opóźnień. Podajemy warunek dostateczny na wystąpienie bifurkacji...
-
Expression of alternatively spliced variants of the Dclk1 gene is regulated by psychotropic drugs
Publication -
Adverse Childhood Experiences and Methylation of the FKBP5 Gene in Patients with Psychotic Disorders
Publication -
HPV16 E6 Gene Transcripts in Primary Type II Endometrial Carcinomas
Publication -
Biofilm formation as a virulence determinant of uropathogenic Escherichia coli Dr+ strains
PublicationInfekcje dróg moczowych stanowią największy problem zdrowotny dotykający miliony osób populacji ludzkiej każdego roku. Uropatogenne szczepy Escherichia coli są najczęstszym czynnikiem etiologicznym odpowiedzialnym za wywoływanie górnych i dolnych dróg moczowych. Powyższe szczepy bakteryjne produkują szereg czynników wirulentnych pośród, których wyróżnić można eksponowane powierzchniowo polimeryczne struktury adhezyjne (fimbrie/pile)...
-
A novel cold-active β-D-galactosidase with transglycosylation activity from the Antarctic Arthrobacter sp. 32cB - gene cloning, purification and characterization
PublicationA gene encoding a novel β-D-galactosidase from the psychrotolerant Antarctic bacterium Arthrobacter sp. 32cB was isolated, cloned and expressed in Escherichia coli. The active form of recombinant β-D-galactosidase consists of two subunits with a combined molecular weight of approximately 257 kDa. The enzyme's maximum activity towards o-nitrophenyl-β-D-galactopyranoside was determined as occurring at 28 °C and pH 8.0. However, it...
-
An MTA-phosphorylase gene discovered in the metagenomic library derived from Antarctic top soil during screening for lipolytic active clones confers strong pink fluorescence in the presence of rhodamine B.
PublicationIn this work, we present the construction of a metagenomic library in Escherichiacoli using the pUC19 vector and environmental DNA directly isolated fromAntarctic topsoil and screened for lipolytic enzymes. Unexpectedly, the screeningon agar supplemented with olive oil and rhodamine B revealed one unusual pinkfluorescent clone (PINKuv) out of 85 000 clones. This clone harbored a plasmid,pPINKuv, which has an insert of 8317 bp that...