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Search results for: rna-seq
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Sequences of large subunit ribosomal RNA gene, partial sequence encoding D1/D2 domain of psychrotolerant pigment-producing yeast-like fungi
Open Research DataDNA fragments encoding D1/D2 domain of large subunit ribosomal RNA of psychrotolerant pigment-producing yeast-like fungi named Red, Pink and Black were PCR amplified using NL1 5’ GCATATCAATAAGCGGAGGAAAAG 3’ and NL4 5’ GGTCCGTGTTTCAAGACGG 3’ primers and sequenced by Sanger method using the same primers.
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TRNA-Leu (UUR) gene haplotypes observed in canine mammary gland tumours and its deleterious effect assessment according to the comparative analysis with TRNL1 human gene
Open Research DataThe aetiology and pathogenesis of many canine tumours are likely to be similar to cancers found in humans. This study aimed to present a plausible link between changes in tRNA-Leu (UUR) gene and the carcinogenesis process in dogs with mammary gland tumours. The whole mitochondrial DNA (mtDNA) isolated from blood and tumour tissues of 13 dogs with malig-nant...
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ArchBGal32cB 441Glu mutein gene analysis dataset
Open Research Data -
Analysis of induction of DNA DSBs on telomeres in A549 cells
Open Research DataData consist of an analysis of DNA DSBs on telomeres. A549 were treated with compounds (TXT4, MTX, DMSO) at IC90 concentration for the indicated time. Images were acquired with an LSM 800 inverted laser scanning confocal microscope (Carl Zeiss; Dresden, Germany) equipped with an Airyscan detector using a ×63 1.4 NA Plan Apochromat objective (Carl Zeiss)....
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Sequences of internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2 of psychrotolerant pigment-producing yeast-like fungi
Open Research DataDNA encoding ITS1-5.8S-ITS2 fragments of psychrotolerant pigment-producing yeast-like fungi named Red, Pink and Black were PCR amplified using ITS1 5' TCCGTAGGTGAACCTGCGG 3' and ITS4 5’ TCCTCCGCTTATTGATATGC 3’ primers and sequenced by Sanger method using the same primers.
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Molecular differences in mitochondrial DNA (mtDNA) genomes of dogs with malignant mammary tumours
Open Research DataThe aim of this study was to determine molecular defects in mitochondrial DNA with the use of large-scale genome analysis in malignant canine mammary gland tumours and indicate whether these changes were linked with the carcinogenesis process. With the use of the NGS technology, we sequenced 27 samples of mtDNA isolated from blood and tumours obtained...
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Long-term hindcast simulation of sea level in the Baltic Sea
Open Research DataThe dataset contains the results of numerical modelling of sea level fluctuations over a period of 50 years (1958-2007) in the Baltic Sea. A long-term hindcast simulation was performed using a three-dimensional hydrodynamic model PM3D (Kowalewski and Kowalewska-Kalkowska, 2017), a new version of the M3D model (Kowalewski, 1997). The hydrodynamic model...
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Long-term hindcast simulation of sea ice in the Baltic Sea
Open Research DataThe data set contains the results of numerical modeling of sea ice over a period of 50 years (1958-2007) in the Baltic Sea. A long-term hindcast simulation was performed using a three-dimensional hydrodynamic model PM3D (Kowalewski and Kowalewska-Kalkowska, 2017), a new version of the M3D model (Kowalewski, 1997). A numerical dynamic-thermodynamic model...
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Monthly mean concentration of chlorophyll a on the sea surface of the Baltic Sea
Open Research DataMonthly mean surface concentration of chlorophyll a in the years 2003-2022 calculated on the basis of data from the SatBaltic System (https://satbaltyk.iopan.gda.pl/). Maps of monthly average values with a resolution of 1 km were derived from daily satellite data from the Moderate Resolution Imaging Spectroradiometer (MODIS). Gaps in satellite images...
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Monthly mean sea surface temperature (SST) of the Baltic Sea
Open Research DataMonthly mean sea surface temperature (SST) from 2001 to 2022 calculated from data from the SatBaltic System (https://satbaltyk.iopan.gda.pl/). The spatial resolution of the maps is 1 km. The calculation of monthly mean values at each pixel was based on four SST maps on each day of the month. The primary source of SST information was satellite data collected...
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Phylogenetic trees of genus Oncidium Sw. based on analysis of DNA sequences
Open Research DataGenus Oncidium Sw. is widely regarded as a polyphiletic, and the taxonomic boundaries between him and such genera as Odontoglossum Kunth. or Miltonia Lindley remain blurred. The goal of the study was to determine the phylogenetic relationships within the genus Oncidium s.lato based on the DNA sequences analysis. The correlation between molecular data...
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Hydrodynamic reanalysis of sea level in the Baltic Sea using the PM3D model
Open Research DataThe data set contains the results of numerical modelling of sea level fluctuations in the Baltic Sea in the Baltic Sea since 1998. A long-term reanalysis was performed using a three-dimensional hydrodynamic model PM3D (Kowalewski and Kowalewska-Kalkowska, 2017), a new version of the M3D model (Kowalewski, 1997).
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SEM photos of biochars
Open Research DataThe photos show biochars made from sunflower husks, along with 3 modifications
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SEM pictures - biomass
Open Research DataThe dataset contains SEM pictures catching the changes occurring in biomass structures when the biomass undergoes pre-treatment processes.
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Bacteriological monitoring of coastal sea waters – Gulf of Gdańsk (Baltic Sea) in 2009
Open Research DataThe dataset contains the results of a bacteriological and physicochemical studies of Gdansk Bay coastal waters within the administrative boundaries of Gdańsk city in 2009. The examined material consisted of water samples collected from 15 sampling points. The aim of this study was to determine the number of Escherichia coli and the number of intestinal...
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Bacteriological monitoring of coastal sea waters – Gulf of Gdańsk (Baltic Sea) in 2010
Open Research DataThe dataset contains the results of a bacteriological and physicochemical studies of Gdansk Bay coastal waters within the administrative boundaries of Gdańsk city in 2010. The examined material consisted of water samples collected from 15 sampling points. The aim of this study was to determine the number of Escherichia coli and the number of intestinal...
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Bacteriological monitoring of coastal sea waters – Gulf of Gdańsk (Baltic Sea) in 2008
Open Research DataThe dataset contains the results of a bacteriological and physicochemical studies of Gdansk Bay coastal waters within the administrative boundaries of Gdańsk city in 2008. The examined material consisted of water samples collected from 15 sampling points. The aim of this study was to determine the number of Escherichia coli and the number of intestinal...
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Bacteriological and physicochemical monitoring of coastal sea waters – Gulf of Gdańsk (Baltic Sea) in 2004
Open Research DataThe dataset contains the results of a bacteriological and physicochemical studies of Gdansk Bay coastal waters within the administrative boundaries of Gdańsk city in 2004. The examined material consisted of water samples collected from 15 sampling points. Number of Escherichia coli, number of intestinal enterococci, presence of Salmonella sp., pH, temperature,...
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Bacteriological and physicochemical monitoring of coastal sea waters – Gulf of Gdańsk (Baltic Sea) in 2006
Open Research DataThe dataset contains the results of a bacteriological and physicochemical studies of Gdansk Bay coastal waters within the administrative boundaries of Gdańsk city in 2006. The examined material consisted of water samples collected from 15 sampling points. Number of Escherichia coli, number of intestinal enterococci, presence of Salmonella sp., pH, temperature,...
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Bacteriological and physicochemical monitoring of coastal sea waters – Gulf of Gdańsk (Baltic Sea) in 2007
Open Research DataThe dataset contains the results of a bacteriological and physicochemical studies of Gdansk Bay coastal waters within the administrative boundaries of Gdańsk city in 2007. The examined material consisted of water samples collected from 15 sampling points. Number of Escherichia coli, number of intestinal enterococci, presence of Salmonella sp., pH, temperature,...
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SEM images of MXene catalysts
Open Research DataData contain results SEM measurements of the Ti3C2Tx MXenes produced via acidic etching aluminum from MAX Phase (Ti3C2-Al-Ti3C2-Al-Ti3C2) using different etching agents, HF/HCl and HF/H2SO4 with different weight ratios (1:3, 1:4, and 1:5). The samples were labeled as MXene HF/HCl X:Y and MXene HF/H2SO4 X:Y, where X:Y means the acids weight ratios. MAX...
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SEM micrographs of NH4VO3 crystals
Open Research DataThe DataSet contains the scanning electron microscopy (SEM) micrographs of NH4VO3 crystals obtained by the LPE-IonEx method. The SEM images clearly show that the morphology of the end product can be nicely tuned by changing the type of ammonium salt and the solvent. It can be concluded that the used solvent affected crystal shapes and their size was...
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SEM inwestigation of the silver nanostructures
Open Research DataSilver thin films with a thickness of 1nm, 3nm, 5nm, 7nm and 9nm were deposited by a table-top magnetron sputtering unit in a pure argon plasma from a high-purity silver target. Silicon wafers was used as a substrates. As-deposired films were annealed in Ar atmosphere at 550 Celsius degree for 15 minutes.As a result of annealing, Ag nanostructures formed...
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Confocal microscopy analysis of DNA DSB in telomerase negative cells after exposure to TXT2 and TXT4
Open Research DataThe data sets contain confocal microscopic images showing the γ-H2AX with TRF2 after treatment of NHBE and U2OS cell lines with TXT2 and TXT4 in equitoxic concentrations. Images were acquired with an LSM 800 inverted laser scanning confocal microscope (Carl Zeiss; Dresden, Germany) equipped with an Airyscan detector using a ×63 1.4 NA Plan Apochromat...
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Sea surface temperature in the Baltic Sea derived from Landsat 8 satellite data - path 194
Open Research DataThe data set contains high resolution sea surface temperature (SST) maps estimated from Landsat 8 Level 1 Thermal Infrared Sensor (TIRS) data using NLSST algorithm. SST was calculated only for granules (185 x 180 km) from satellite path number 194, that covered at least 2000 km2 of the cloud-free area of the Baltic Sea.
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Sea surface temperature in the Baltic Sea derived from Landsat 8 satellite data - path 192
Open Research DataThe data set contains high resolution sea surface temperature (SST) maps estimated from Landsat 8 Level 1 Thermal Infrared Sensor (TIRS) data using NLSST algorithm. SST was calculated only for granules (185 x 180 km) from satellite path number 192, that covered at least 2000 km2 of the cloud-free area of the Baltic Sea.
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Sea surface temperature in the Baltic Sea derived from Landsat 8 satellite data - path 191
Open Research DataThe data set contains high resolution sea surface temperature (SST) maps estimated from Landsat 8 Level 1 Thermal Infrared Sensor (TIRS) data using NLSST algorithm. SST was calculated only for granules (185 x 180 km) from satellite path number 191, that covered at least 2000 km2 of the cloud-free area of the Baltic Sea.
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Sea surface temperature in the Baltic Sea derived from Landsat 8 satellite data - path 193
Open Research DataThe data set contains high resolution sea surface temperature (SST) maps estimated from Landsat 8 Level 1 Thermal Infrared Sensor (TIRS) data using NLSST algorithm. SST was calculated only for granules (185 x 180 km) from satellite path number 193, that covered at least 2000 km2 of the cloud-free area of the Baltic Sea.
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Sea surface temperature in the Baltic Sea derived from Landsat 8 satellite data - path 190
Open Research DataThe data set contains high resolution sea surface temperature (SST) maps estimated from Landsat 8 Level 1 Thermal Infrared Sensor (TIRS) data using NLSST algorithm. SST was calculated only for granules (185 x 180 km) from satellite path number 190, that covered at least 2000 km2 of the cloud-free area of the Baltic Sea.
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Equilibrium constants (Keq) of reforming reactions
Open Research DataThe equilibrium constants (K) of reforming reactions in SOFC were supplied with this dataset
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SEM micrographs of VO2 and V6O13 nanostructures
Open Research DataThe DataSet contains the scanning electron microscopy (SEM) micrographs of VO2 and V6O13 thin films deposited on a silicon substrate. The as-prepared thin films were annealing under a reducing atmosphere (94% Ar, 6% H2) at 600 and 700C for 10h.
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SEM micrographs of ammonium vanadate nanocrystals
Open Research DataThe DataSet contains the electron microscopy (SEM) micrographs of ammonium vanadate nanobelts obtained by the hydrothermal method with different conditions. The results show that the morphology of samples dependent on reaction conditions.
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SEM images of dewetted gold films
Open Research DataGold nanostructures were prepared on silicon - Si(111) as a substrate. as a result of dewetting process. Thin golds films were deposited using a table-top dc magnetron sputtering coater under pure Ar plasma conditions . The Au target had 99.99% purity, the rate of Au layer deposition was about 0.4 nm·s−1 and the incident power was 32 W. The thickness...
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SEM images of Mo2Ga2C MAX material
Open Research DataIn the dataset, are included SEM images of molybdenum gallium carbide MAX materials.
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The voltage on bus bars of the main switchboard of the car carrier electrical power system at sea trials during a sea voyage
Open Research DataThe dataset is part of the research results on the quality of supply voltage on bus bars of the main switchboard of the ship's electrical power system in different states of ship exploitation. The attached dataset contains the measurement results conducted onboard the car carrier at sea trials. The data were recorded during a sea voyage, under normal...
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Simulations of flows in the coastal zone of the Baltic Sea
Open Research DataThe study area is located in the Southern Baltic, within Polish Marine Areas, adjacent to the coastline in the vicinity of Lubiatowo village, where The Coastal Research Station (CRS) – a field laboratory of the Institute of Hydro-Engineering of the Polish Academy of Sciences (IBW PAN) –is situated. The numerical reconstruction of the coastal flow was...
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Calculations of material factors for a set of 20 thermistors
Open Research DataThe presented data set is part of the research aimed at determining the actual characteristics of each thermistor in a package of twenty NTC10k type sensors.
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Methane (CH4) calibration set of FTIR spectra
Open Research DataThe calibration spectra for CH4 concentration calibration were supplied with this dataset
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Determination of sex hormone concentration in wastewater samples.
Open Research DataConcentration levels of five selected steroid hormones in influent and effluent waters from wastewater treatment plant were determined using SPE(C18)-HPLC-ESI/MS/MS method. Sex hormones like: estradiol, estriol, estrone, 17-α-ethynyloestradiol, progesterone were present in all influent wastwater samples.
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SEM micrographs of morphology evolution of V2O5 nanostructures
Open Research DataThe DataSet contains the scanning electron microscopy (SEM) micrographs of morphology evolution of vanadium pentaoxide nanostructures obtained by the sol-gel, depending on annealing temperature under synthetic air. The results show that the morphology dependent on the annealing temperature.
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SEM micrographs of morphology evolution of V2O3 nanostructures
Open Research DataThe DataSet contains the scanning electron microscopy (SEM) micrographs of V2O3 nanostructures obtained by the sol-gel with different reaction conditions. The xerogel powder was annealing under a reducing atmosphere (94% Ar, 6% H2) in the temperature range 350-700C. The results show that the morphology dependent on the annealing temperature.
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SEM micrographs and photos of salivary gland stones
Open Research DataThis dataset contains SEM micrographs and high-resolution photographs taken for salivary gland stones (sialolith) extracted during joint studies between Medical University of Gdansk and Gdansk University of Technology.
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The EDS elemental maps of reduced LSCNT (SEM)
Open Research DataThe dataset includes elemental maps of La, Ce, Ti, O, Sr, Ni in La0.27Sr0.54Ce0.09Ni0.1Ti0.9O3-s produced using Pechini method sintered at 1200oC under air atmosphere and reduced at 900 for 12 h in wet H2.
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Formation of gold anostructures detected by SEM microscope
Open Research DataGold nanostructures were prepared on silicon - Si(111) as a substrate. The substrates (1 × 1 cm2 of area) were cleaned with acetylacetone and then rinsed in ethanol. Thin Au films (with thicknesses in a range of 1.7–5.0 nm) were deposited using a table-top dc magnetron sputtering coater (EM SCD 500, Leica) under pure Ar plasma conditions (Argon, Air...
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SEM images of tge gold nanostructures on silicon
Open Research DataAu nanostructures were prepared on Si(111) as a substrate. The substrates (1 × 1 cm2 of area) were cleaned with acetylacetone and then rinsed in ethanol. Thin Au films (with thicknesses in a range of 1.7–5.0 nm) were deposited using a table-top dc magnetron sputtering coater (EM SCD 500, Leica) under pure Ar plasma conditions (Argon, Air Products 99.999%)....
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SEM micrographs of Ti tooth implant corrosion
Open Research DataThe dataset contains micrographs made with a scanning electron microscope (SEM) Hitachi S-3400N of the tooth implant removed after inflammation. The inflammation was induced by the increased corrosion rate of the titanium screw. The reason for the corrosion to occur was the appearance of the concentration cell of different aeration for various areas...
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SEM results of melamine sponges impregnated by DES
Open Research DataSEM results of melamine sponges impregnated by DES (3 um magnification). The set includes raw data from SEM analysis of pure melamine sponge and melamine sponges impregnated by:- Eucalyptol:Menthol (1:1)- Eucalyptol:Menthol (1:2)- Eucalyptol:Menthol (1:3)- Eucalyptol:Menthol (1:4)- Eucalyptol:Menthol (1:5)- Thymol:Menthol (1:1)
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Flow cytometry analysis of DNA DSBs in telomerase positive and negative cell lines after treatment with TXT2 and TXT4
Open Research DataFlow cytometry analysis of DNA DSBs in telomerase positive (A549, H460) and negative (NHBE2594, U2OS) cell lines after treatment with equitoxic concentrations of TXT2 and TXT4. MTX and DMSO were used as positive and negative controls, respectively.
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Study of the ability of TXT-compounds to promote telomeric G4 DNA thermal stabilization using FRET melting assay
Open Research DataThe data set contains a DNA melting screen obtained from the FRET melting assay. Thermal stabilities of G-quadruplex structures were analysed in the presence and in absence of ligands. TMPyP4 and MTX were used as references. Measurements were carried out in triplicate using a LightCycler 480 thermocycler (Roche Life Science) with a filter setting of...
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Absorption and fluorescence spectrum the Diamond™ nucleic acid dye applied to DNA and friction ridge analysis from fingerprint traces
Open Research DataThe results of a study of the spectroscopic properties of Diamond™ dye binding to reference DNA and to DNA from a fingerprint using a UV/VIs spectrophotometer and a spectrofluorimeter are presented.