Search results for: RUINA
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Runa
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The Zręb Tower proposals for saving the ruins
PublicationZabytkowa baszta pod Zrębem w latach siedemdziesiątych XX wieku uległa awarii, zawalił się dach oraz częściowo ściany. W pracy przedstawiono propozycje zabezpieczenia budowli przed postępującą destrukcją.
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Problematyka konserwatorska ruin zamku w Człuchowie
PublicationArtykuł dotyczy stanu zachowania ruin zamku oraz propozycji przeprowadzenia prac konserwatorskich.
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Badania i możliwości adaptacji ruin kościoła we Wocławach
PublicationW artykule opisano wyniki badań ruin kościoła z XIV w. we Wocławach. Przedstawiono też problem adaptacji ruin obiektów sakralnych, możliwości zagospodarowania oraz możliwe warianty odbudowy ruin. Po wojnie trzynastoletniej kościół został rozbudowany o nawy boczne i wieżę. Układ świątyni został zredukowany w czasie odbudowy po pożarze w XVIII w. W czasie II wojny światowej kościół został zniszczony. Do dziś nie został odbudowany...
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Journal of Acupuncture and Tuina Science
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Współczesne tendencje zabezpieczania zabytkowych ruin w kontekście polskich potrzeb i możliwości
PublicationPublikacja przedstawia polskie możliwości adaptacji ruin w kontekście doświadczeń miedzynarodowych, z podkresleniem dokonań realizacji norweskich. Omawiając szczegółowo projekt i realizację w Hamar, autorka eksponuje rolę jakości zabezpieczeń (zarówno w fazie projektowej jak i realizacyjnej) oraz wysoki koszt tego rodzaju pozytywnych przedwsięzięć.
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APROKSYMACJE DE VYLDERA PRAWDOPODOBIEŃSTWA RUINY DLA MODELU Z CZASEM CIĄGŁYM W NIESKOŃCZONYM HORYZONCIE CZASOWYM
PublicationArtykuł przedstawia przegląd badań oraz ewolucję aproksymacji De Vyldera. Metoda ta polega na zastąpieniu procesu ryzyka poprzez inny proces ryzyka z wykładniczym rozkładem szkód tak, aby momenty pierwszych trzech rzędów przyrostu dla obu procesów były jednakowe. Idea tego oszacowania została wykorzystana w aproksymacji 4-gamma De Vyldera, w której zastosowano zastąpienie procesu ryzyka procesem ryzyka z rozkładem gamma szkód,...
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Satish Raina prof. dr
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Regulated Control of the Assembly and Diversity of LPS by Noncoding sRNAs
PublicationThe outer membrane (OM) of Gram-negative bacteria is asymmetric due to the presence of lipopolysaccharide (LPS) facing the outer leaflet of the OM and phospholipids facing the periplasmic side. LPS is essential for bacterial viability, since it provides a permeability barrier and is a major virulence determinant in pathogenic bacteria. In Escherichia coli, several steps of LPS biosynthesis and assembly are regulated by the RpoE...
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Small regulatory bacterial RNAs regulating the envelope stress response
PublicationMost bacteria encode a large repertoire of RNA-based regulatory mechanisms. Recent discoveries have revealed that the expression of many genes is controlled by a plethora of base-pairing noncoding small regulatory RNAs (sRNAs), regulatory RNA-binding proteins and RNA-degrading enzymes. Some of these RNA-based regulated processes respond to stress conditions and are involved in the maintenance of cellular homeostasis. They achieve...
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Regulated Assembly of LPS, Its Structural Alterations and Cellular Response to LPS Defects
PublicationDistinguishing feature of the outer membrane (OM) of Gram-negative bacteria is its asymmetry due to the presence of lipopolysaccharide (LPS) in the outer leaflet of the OM and phospholipids in the inner leaflet. Recent studies have revealed the existence of regulatory controls that ensure a balanced biosynthesis of LPS and phospholipids, both of which are essential for bacterial viability. LPS provides the essential permeability...
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Gracjana Klein-Raina dr hab.
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Mohammad Hossein Ghaemi dr inż.
PeopleMohammad Hossein Ghaemi Mohammad Hossein Ghaemi (1967), is an Assistant Professor at the Faculty of Mechanical Engineering and Ship Technology - WIMiO (till 2020: Faculty of Ocean Engineering and Ship Technology), Department of Automatics and Marine Energy Engineering. He studied first at Tehran University, where was graduated in the field of Mechanical Engineering (Solid Mechanics). Then he received his MSc degree in the area...
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Lipopolysaccharides: regulated biosynthesis and structural diversity
PublicationThe cell envelope of Gram-negative bacteria contains two distinct membranes, an inner (IM) and an outer (OM) membrane, separated by the periplasm, a hydrophilic compartment that includes a thin layer of peptidoglycan. The most distinguishing feature of such bacteria is the presence of an asymmetric OM with phospholipids located in the inner leaflet and lipopolysaccharides (LPSs) facing the outer leaflet. The maintenance of this...
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Molecular basis of essentiality of early critical steps in the lipopolysaccharide biogenesis in Escherichia coli K-12: requirement of MsbA, cardiolipin, LpxL, LpxM and GcvB
PublicationTo identify the physiological factors that limit the growth of Escherichia coli K-12 strains synthesizing minimal lipopolysaccharide (LPS), we describe the first construction of strains devoid of the entire waa locus and concomitantly lacking all three acyltransferases (LpxL/LpxM/LpxP), synthesizing minimal lipid IVA derivatives with a restricted ability to grow at around 21 °C. Suppressors restoring growth up to 37 °C of Δ(gmhD-waaA)...
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Phosphorylation‐mediated regulation of heat shock response in Escherichia coli
PublicationEscherichia coli has two heat shock regulons under the transcriptional control of Esigma(32) and Esigma(E) RNA polymerases. These polymerases control the expression of genes, the products of which are needed for correct folding of proteins in the cytoplasm and the extracytoplasm respectively. In this study, we report that mutations in a tyrosine phosphatase-encoding gene led to decreased activity of these heat shock regulons. The...
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Molecular basis of lipopolysaccharide heterogeneity in Escherichia coli: envelope stress-responsive regulators control the incorporation of glycoforms with a third 3-deoxy-α-D-manno-oct-2-ulosonic acid and rhamnose.
PublicationMass spectrometric analyses of lipopolysaccharide (LPS) from isogenic Escherichia coli strains with nonpolar mutations in the waa locus or overexpression of their cognate genes revealed that waaZ and waaS are the structural genes required for the incorporation of the third 3-deoxy-α-D-manno-oct-2-ulosonic acid (Kdo) linked to Kdo disaccharide and rhamnose, respectively. The incorporation of rhamnose requires prior sequential incorporation...
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Regulation of the First Committed Step in Lipopolysaccharide Biosynthesis Catalyzed by LpxC Requires the Essential Protein LapC (YejM) and HslVU Protease
PublicationWe previously showed that lipopolysaccharide (LPS) assembly requires the essential LapB protein to regulate FtsH-mediated proteolysis of LpxC protein that catalyzes the first committed step in the LPS synthesis. To further understand the essential function of LapB and its role in LpxC turnover, multicopy suppressors of ΔlapB revealed that overproduction of HslV protease subunit prevents its lethality by proteolytic degradation...
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Checkpoints that regulate balanced biosynthesis of lipopolysaccharide and its essentiality in Escherichia coli
PublicationThe outer membrane (OM) of Gram-negative bacteria, such as Escherichia coli, is essential for their viability. Lipopolysaccharide (LPS) constitutes the major component of OM, providing the permeability barrier, and a tight balance exists between LPS and phospholipids amounts as both of these essential components use a common metabolic precursor. Hence, checkpoints are in place, right from the regulation of the first committed step...
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Immunization with an anti-idiotypic antibody against the broadly lipopolysaccharide-reactive antibody WN1 222-5 induces Escherichia coli R3-core-type specific antibodies in rabbits
PublicationThe mouse monoclonal antibody (mAb) WN1 222-5 recognizes a carbohydrate epitope in the inner core region of LPS that is shared by all strains of Escherichia coli and Salmonella enterica and is able to neutralize their endotoxic activity in vitro and in vivo. Immunization of mice with mAb WN1 222-5 yielded several anti-idiotypic mAbs one of which (mAb S81-19) competitively inhibited binding of mAb WN1 222-5 to E. coli and Salmonella...
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Assembly of Lipopolysaccharide in Escherichia coli Requires the Essential LapB Heat Shock Protein
PublicationHere, we describe two new heat shock proteins involved in the assembly of LPS in Escherichia coli, LapA and LapB (lipopolysaccharide assembly protein A and B). lapB mutants were identified based on an increased envelope stress response. Envelope stress responsive pathways control key steps in LPS biogenesis and respond to defects in the LPS assembly. Accordingly, the LPS content in ΔlapB or Δ(lapA lapB) mutants was elevated, with...
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Escherichia coli K-12 suppressor-free mutants lacking early glycosyltransferases and late acyltransferases. Minimal lipopolysaccharide structure and induction of envelope stress response.
PublicationTo elucidate the minimal lipopolysaccharide (LPS) structure needed for the viability of Escherichia coli, suppressor-free strains lacking either the 3-deoxy-d-manno-oct-2-ulosonic acid transferase waaA gene or derivatives of the heptosyltransferase I waaC deletion with lack of one or all late acyltransferases (lpxL/M/P) and/or various outer membrane biogenesis factors were constructed. Δ(waaC lpxL lpxM lpxP) and waaA mutants exhibited...
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Microbe Power and Diversity: in Health and Society
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Instrumental Techniques in Environmental Biology - wykład
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Recent advances in transcription regulation
e-Learning CoursesRecent advances in transcription regulation
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Microbe Power and Diversity: in Health and Society - wykład
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Nowe stanowisko podgrzybka pasożytniczego Xerocomus parasiticus w Trójmiejskim Parku Krajobrazowym (Pomorze Gdańskie).
PublicationOpisano 67 stanowisko w kraju i drugie w Trójmiejskim Parku Krajobrazowym rzadkiego przedstawiciela grzybów wielkoowocnikowych (macromycetes) - podgrzybka pasożytniczego Xerocomus parasiticus, pasożytującego na tęgoskórze pospolitym scleroderma citrinum. Przedstawiono budowę morfologiczną owocnika podgrzybka oraz jego ekologię, a także ekologię gospodarza - tęgoskóra pospolitego. Opisano okoliczne zbiorowisko leśne, wymieniono...
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Multiple transcriptional factors regulate transcription of the rpoE gene in Escherichia coli under different growth conditions and when the lipopolysaccharide biosynthesis is defective.
PublicationThe RpoE sigma factor is essential for the viability of Escherichia coli. RpoE regulates extracytoplasmic functions including lipopolysaccharide (LPS) translocation and some of its non-stoichiometric modifications. Transcription of the rpoE gene is positively autoregulated by EσE and by unknown mechanisms that control the expression of its distally located promoter(s). Mapping of 5′ ends of rpoE mRNA identified five new transcriptional...
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Identification of Substrates of Cytoplasmic Peptidyl-Prolyl Cis/Trans Isomerases and Their Collective Essentiality in Escherichia Coli
PublicationProtein folding often requires molecular chaperones and folding catalysts, such as peptidyl-prolyl cis/trans isomerases (PPIs). The Escherichia coli cytoplasm contains six well-known PPIs, although a requirement of their PPIase activity, the identity of their substrates and relative enzymatic contribution is unknown. Thus, strains lacking all periplasmic and one of the cytoplasmic PPIs were constructed. Measurement of their PPIase...
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Multicopy Suppressor Analysis of Strains Lacking Cytoplasmic Peptidyl-Prolyl cis/trans Isomerases Identifies Three New PPIase Activities in Escherichia coli That Includes the DksA Transcription Factor
PublicationConsistent with a role in catalyzing rate-limiting step of protein folding, removal of genes encoding cytoplasmic protein folding catalysts belonging to the family of peptidyl-prolyl cis/trans isomerases (PPIs) in Escherichia coli confers conditional lethality. To address the molecular basis of the essentiality of PPIs, a multicopy suppressor approach revealed that overexpression of genes encoding chaperones (DnaK/J and GroL/S),...
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Dissection of σE‐dependent cell lysis in Escherichia coli: roles of RpoE regulators RseA, RseB and periplasmic folding catalyst PpiD
PublicationTo understand the mechanism of sigma(E)-dependent cell lysis, we examined the consequences of deletion derivatives of rpoE regulators rseA, rseB and rseC on sigma(E) transcription, on levels of free versus membrane-bound sigma(E) and on OMP-biogenesis limiting factor(s) that could impact cell lysis. RT-PCR showed that individual nonpolar DeltarseA and DeltarseB increased the rpoE expression to varying extents, with pronounced induction...
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Małe stacje kolejowe - perstektywa adaptacji i szansa na przetrwanie
PublicationPonad 150 letni czas funkcjonowania kolei, to zarówno czs szybkiego rozwoju, na początku XX wieku i w okresie międzywojennym, gdy nastąpił szybki rozwój liczby nowych, ważnych odcinków kolejowych, oraz okres załamania, które obserwujemy od kilkudziesięciu lat. Przez początkowe dziesięsiolecia powstało wiele obiektów stacji kolejowych i obiektów towarzyszących, które w chwil obecnej wymagają pilej interwencji, by nieużytkowane,...
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Suppressors of lapC mutation identify new regulators of LpxC, which mediates the first committed step in lipopolysaccharide biosynthesis
PublicationGram-negative bacteria, such as Escherichia coli, are characterized by an asymmetric outer membrane (OM) with lipopolysaccharide (LPS) located in the outer leaflet and phospholipids facing the inner leaflet. E. coli recruits LPS assembly proteins LapB, LapC and LapD in concert with FtsH protease to ensure a balanced biosynthesis of LPS and phospholipids. We recently reported that bacteria either lacking the periplasmic domain of...
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Molecular and structural basis of inner core lipopolysaccharide alterations in Escherichia coli: incorporation of glucuronic acid and phosphoethanolamine in the heptose region.
PublicationIt is well established that lipopolysaccharide (LPS) often carries nonstoichiometric substitutions in lipid A and in the inner core. In this work, the molecular basis of inner core alterations and their physiological significance are addressed. A new inner core modification of LPS is described, which arises due to the addition of glucuronic acid on the third heptose with a concomitant loss of phosphate on the second heptose. This...
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Maczużnik nasięźrzałowy Cordyceps ophioglossoides (Erenb.: Fr.) Link w okolicy Gdańska (województwo pomorskie).
PublicationW artykule opisano dwa stanowiska maczużnika nasięźrzałowego Cordyceps ophioglossoides, stwierdzone w okolicy Gdańska. Opisano siedlisko tego grzyba - wymieniono typy lasów i rodzaje drzewostanów, rośliny runa oraz macromycetes towarzyszące omawianemu gatunkowi grzyba. Omówiono jego rozsiedlenie na świecie i w kraju. Opisano budowę owocników maczużnika, jego biologię i ekologię, a także jego żywiciela - jeleniaka sarniego. Podkreślono,...
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A new factor LapD is required for the regulation of LpxC amounts and lipopolysaccharide trafficking
PublicationLipopolysaccharide (LPS) constitutes the major component of the outer membrane and is essential for bacteria, such as Escherichia coli. Recent work has revealed the essential roles of LapB and LapC proteins in regulating LPS amounts; although, if any additional partners are involved is unknown. Examination of proteins co-purifying with LapB identified LapD as a new partner. The purification of LapD reveals that it forms a complex...
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PODSTAWY BIOLOGII - wykład
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[NCh-bio] Advances in Biotechnology: Protein Folding and Assembly
e-Learning Courses{mlang pl} Dyscyplina: nauki chemiczne Zajęcia obowiązkowe dla doktorantów I i II roku z obszaru biotechnologii Prowadzący: dr hab. Gracjana Klein-Raina, prof. PG Liczba godzin: 15 Forma zajęć: wykład {mlang} {mlang en} Discipline: chemical sciences Obligatory course for 1st and 2nd-year PhD students from biotechnology area Academic teachers: dr hab. Gracjana Klein-Raina, prof. PG Total hours of training: 15 teaching...
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Przemysław Rujna
People -
A HISTORICAL BUILDING'S RESTORATION IN THE CONSTRUCTIONAL ASPECT ON THE EXAMPLE OF A BUILDING LOCATED IN POLAND
PublicationObjects of cultural heritage are an extremely important element in the proper functioning of the social life. They provide information on our ancestors' actions, as well as shape our culture and social awareness. It is important for the historical objects to provide those information accurately, that is without any unnecessary human intervention over the years of the monument's existence. However, it is not always possible due...
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Powojenny rozdział w historii architektury i zagospodarowania portu gdyńskiego
PublicationThe port of Gdynia, considered one of the largest civil construction projects of the 20th century in Europe, was built at an express pace for only a dozen or so years from the mid-1920s to the end of the 1930s. Unusual solutions from the construction period in the port engineering category, as well as outstanding architectural works The industrial area quickly became architectural symbols of economic growth and the general rebirth...
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Podstawy biologii z elementami biologii komorki
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Podstawy biologii z elementami biologii komórki wykład 2022/2023
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Podstawy biologii z elementami biologii komórki - wykład
e-Learning CoursesPodstawy biologii z elementami biologii komórki - wykład (2021/2022)
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Podstawy biologii z elementami biologii komórki - wykład 2023/2024
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Characterization of a new essential TPR protein LapB and a new non-coding RNA, which together regulate the assembly of endotoxin.
ProjectsProject realized in Faculty of Chemistry according to UMO-2013/11/B/NZ2/02641 agreement from 2014-07-09
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Requirement of conserved folding catalysts in the functionality of several essential proteins, metabolic pathways and key virulence factors.
ProjectsProject realized in Laboratorium Genetyki Bakterii according to UMO-2017/25/B/NZ6/02021 agreement from 2018-01-03
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Interaction of the conserved region 4.2 of sigma(E) with the RseA anti-sigma factor
PublicationEo-E RNA polymerase transcribes a regulon of folding factors for the bacterial envelope and is induced by physical and chemical stresses. The RseA anti-sigma factor inhibits the activity of Esigma(E) RNA, polymerase. It is shown here that the N-terminal portion of sigma(E), residues 1-153, binds core RNA polymerase. RseA interacts with residues 154-191 of sigma(E), a site that is homologous to region 4, the sigma factor binding...
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Obrony prac doktorskich na Wydziale Chemicznym
EventsDn. 25.02.2022 r. o godz. 10.15 w Audytorium 1.4 Wydziału Chemicznego PG (budynek nr 5) odbędzie się w trybie hybrydowym publiczna obrona pracy doktorskiej mgr inż. Darii Biernackiej.
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Post‐Second World War Reconstruction of Polish Cities: The Interplay Between Politics and Paradigms
PublicationBy the end of the Second World War, many of the Polish cities—and especially their historic centres—were in ruins. This was caused by both bombings and sieges conducted by the Nazis and Soviets. The particular group of cities is associated with former German lands—now called the “Recovered Territories”—which were incorporated into the borders of Poland as compensation for its Eastern Borderlands lost to the Soviet Union. These...