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Wyniki wyszukiwania dla: PROTEIN FOLDING
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Post mortem development of meat quality as related to changes in cytoskeletal proteins of chicken muscles
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Efficient parallel algorithms in global optimization of potential energy functions for peptides, proteins, and crystals
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Electrodes Based on a Titanium Dioxide Nanotube–Spherical Silver Nanoparticle Composite for Sensing of Proteins
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Expression of INHβA and INHβB proteins in porcine oocytes cultured in vitro is dependent on the follicle size
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Identification and properties of the psychrophilic bacterium Desulfolatea psychrophila single-stranded DNA binding proteins
PublikacjaTo study the biochemical properties of SSB from Desulfolatea psychrophila (DpsSSB), we have cloned the ssb genes obtained by PCR and have developed Escherichia coli overexpression systems. The gene consists of an open reading frame of 426 nucleotides encoding SSB protein of 142 amino acids with a calculated molecular mass of 15.6 kDa and it is the smallest known bacterial SSB protein indentified to date. The amino-acid sequence...
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Optimized procedure of extraction, purification and proteomic analysis of nuclear proteins from mouse brain
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Two bacterial small heat shock proteins, IbpA and IbpB, form a functional heterodimer
PublikacjaSmall heat shock proteins (sHsps) are a conserved class of ATP-independent chaperones which in stress conditions bind to unfolded protein substrates and prevent their irreversible aggregation. Substrates trapped in sHsps-containing aggregates are efficiently refolded into native structures by ATP-dependent Hsp70 and Hsp100 chaperones. Most γ-proteobacteria possess a single sHsp (IbpA), while in a subset of Enterobacterales, as...
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The Impact of the Antigenic Composition of Chimeric Proteins on Their Immunoprotective Activity against Chronic Toxoplasmosis in Mice
PublikacjaToxoplasmosis may pose a serious threat for individuals with weakened or undeveloped immune systems. However, to date, there is no specific immunoprophylaxis for humans. Thus, the aim of this study was to evaluate the immunogenicity of three trivalent—SAG2-GRA1-ROP1L (SGR), SAG1L-MIC1-MAG1 (SMM), and GRA1-GRA2-GRA6 (GGG)—and two tetravalent—SAG2-GRA1-ROP1-GRA2 (SGRG) and SAG1-MIC1-MAG1-GRA2 (SMMG)—chimeric T. gondii proteins, as...
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Optimization of parallel implementation of UNRES package for coarse‐grained simulations to treat large proteins
PublikacjaWe report major algorithmic improvements of the UNRES package for physics-based coarse-grained simulations of proteins. These include (i) introduction of interaction lists to optimize computations, (ii) transforming the inertia matrix to a pentadiagonal form to reduce computing and memory requirements, (iii) removing explicit angles and dihedral angles from energy expressions and recoding the most time-consuming energy/force terms...
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RecA Proteins from Deinococcus geothermalis and Deinococcus murrayi - Cloning, Purification and Biochemical Characterisation
PublikacjaEscherichia coli RecA plays a crucial role in recombinational processes, the induction of SOS response and mutagenic lesion bypasses. It has also been demonstrated that RecA protein is indispensable when it comes to the reassembly of shattered chromosomes in gamma-irradiated Deinococcus radiodurans, one of the most radiation-resistant organisms known. Moreover, some functional differences between E. coli and D. radiodurans RecA...
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Effect of urea and glycine betaine on the hydration sphere of model molecules for the surface features of proteins
PublikacjaWater properties may significantly affect protein stability. Osmolytes are compounds that intrinsically affect water in many different ways and thus can influence proteins with this type of indirect mechanism. In this study, we characterize water properties in ternary solutions: model–water–osmolyte, with two model molecules: N-methylacetamide (NMA) and dimethyl sulfoxide (DMSO) and two osmolytes: glycine betaine (TMG)and urea....
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Interactions of telomeric proteins with nucleic acids: sequence recognition on intact and oxidatively damaged telomeres
PublikacjaTelomeres are complex nucleoprotein assemblies that play a vital role in the maintenance of functional ends of linear chromosomes. Telomeric DNA, composed of tandem repeats of the 5'-TTAGGG-3' motif, solves the so-called end replication problem: as chromosomes shorten with each cell division, no information is lost, and the telomere can be re-extended. In the cell, many protein factors regulate telomere length, nuclear positioning...
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Interfacial water controls the process of adsorption of hyperactive antifreeze proteins onto the ice surface
PublikacjaA mechanism of interactions between the ice-binding surface of a hyperactive antifreeze protein molecule and the ice surface is proposed, involving the influence of water present between the two surfaces on the behavior of the approaching molecule. It is demonstrated that the interfacial water, even before its full solidification, can act as a factor that pushes away or pulls nearer the protein molecule to ensure its proper positioning....
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The Effect of Hyperbaric Storage on the Nutritional Value and Retention of Certain Bioactive Proteins in Human Milk
PublikacjaHuman milk (HM) contains the essential macronutrients and bioactive compounds necessary for the normal growth and development of newborns. The milk collected by human milk banks is stored frozen and pasteurized, reducing its nutritional and biological value. The purpose of this study was to determine the effect of hyperbaric storage at subzero temperatures (HS-ST) on the macronutrients and bioactive proteins in HM. As control samples,...
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Nanoparticle Tracking Analysis of Urinary Extracellular Vesicle Proteins as a New Challenge in Laboratory Medicine
PublikacjaUrinary extracellular vesicle (uEV) proteins may be used as specific markers of kidney damage in various pathophysiological conditions. The nanoparticle-tracking analysis (NTA) appears to be the most useful method for the analysis of uEVs due to its ability to analyze particles below 300 nm. The NTA method has been used to measure the size and concentration of uEVs and also allows for a deeper analysis of uEVs based on their protein...
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The structurally similar TRFH domain of TRF1 and TRF2 dimers shows distinct behaviour towards TIN2
PublikacjaThe telomere repeat binding-factor 1 and 2 (TRF1 and TRF2) proteins of the shelterin complex bind to duplex telomeric DNA as homodimers, and the homodimerization is mediated by their TRFH (TRF-homology) domains. We performed molecular dynamic (MD) simulations of the dimer forms of TRF1TRFH and TRF2TRFH in the presence/absence of the TIN2TBM (TIN2, TRF-interacting nuclear protein 2, TBM, TRF-binding motif) peptide. The MD results...
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Correlation between chosen polymorphisms in genes coding 5HTT, 5HT2A and COMT with obesity.
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Estimation of the excitation variances of speech and noise AR-models for enhanced speech coding
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Supervised-learning-based development of multi-bit RCS-reduced coding metasurfaces
PublikacjaCoding metasurfaces have been introduced as efficient tools allowing meticulous control over the electromagnetic (EM) scattering. One of their relevant application areas is radar cross section (RCS) reduction, which principally relies on the diffusion of impinging EM waves. Despite its significance, careful control of the scattering properties poses a serious challenge at the level of practical realization. This article is concerned...
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Intraday price reaction to filing bankruptcy and restructuring proceedings – the evidence from Poland
PublikacjaThis chapter presents the results of research on the price reaction of shares listed on the Warsaw Stock Exchange to filing bankruptcy and/or restructuring applications. Event study was adopted as the research method, and it was performed at 10, 5, and 1-minute intervals. It was found that the reaction is rapid, as it takes 1–2 minutes after the information on bankruptcy and restructuring applications was made public. Significantly...
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A repeated game formulation of network embedded coding for multicast resilience in extreme conditions
PublikacjaComputer networks and data sharing applications are vital for our current society and fundamental for any available ICT solution, so that networking is considered as one of the key critical infrastructures and its correct behavior should be always enforced, even in case of disasters or severe execution conditions. Resilience is a strongly demanding nonfunctional requirement for current computer networks, and one of the key factors...
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Fast Fading Characterization for Body Area Networks in Circular Metallic Indoor Environments
PublikacjaWith the increasing development of 5G and Body Area Network based systems being implemented in unusual environments, propagation inside metallic structures is a key aspect to characterize propagation effects inside ships and other similar environments, mostly composed of metallic walls. In this paper, indoor propagation inside circular metallic structures is addressed and fast fading statistical distributions parameters are obtained...
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Short-Term Price Reaction to Filing for Bankruptcy and Restructuring Proceedings—The Case of Poland
PublikacjaThis study aims to check market reaction to filing for bankruptcy and restructuring proceedings and to verify the short-term effect of a price reversal in the Polish market in the years 2004–2019. The research was conducted by dividing the analysed companies according to the procedure (bankruptcy and restructuring) and market (the main market and the NewConnect market). The research methodology used in the study is the event analysis...
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Karhunen-Loeve-based approach to tracking of rapidly fading wireless communication channels
PublikacjaWhen parameters of wireless communication channels vary at a fast rate, simple estimation algorithms, such as weighted least squares (WLS) or least mean squares (LMS) algorithms, cannot estimate them with the accuracy needed to secure the reliable operation of the underlying communication systems. In cases like this, the local basis function (LBF) estimation technique can be used instead, significantly increasing the achievable...
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A literature survey of the influence of preform reheating and stretch blow molding with hot mold process parameters on the properties of PET containers. Part I.
PublikacjaThe hot fill process is an inexpensive conventional filling technology for high-acidity products (pH < 4.5). It allows certain drinks (sensitive beverages such as fruit and vegetable juices, nectars, soft drinks, vitaminized water) to be stored at ambient temperature without the need for chemical preservatives. The primary feature of the bottles used in the hot fill process is their temperature stability, i.e. the ability to retain...
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Biogas Production in AnMBRs via Treatment of Municipal and Domestic Wastewater: Opportunities and Fouling Mitigation Strategies
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No apparent effect of invasive alien goldenrod on soil microbial communities or soil fauna feeding activity
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Application of agent-based simulated annealing and tabu search procedures to solving the data reduction problem
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The influence of type of dispersed phase on rolling contact fatigue of lubricating greases on mineral base oil
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Analysis of loading history influence on fatigue and fracture surface parameters using the method of induction trees
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Mixed mechanical-metrological approach to quantify the fractographic damage in mechanical components subjected to cyclic loading
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Hybrid super‐twisting fractional‐order terminal sliding mode control for rolling spherical robot
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Ag Loading Enhanced Photocatalytic Activity of g-C3N4 Porous Nanosheets for Decomposition of Organic Pollutants
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Scuffing and rolling contact fatigue resistance of discrete laser spot hardened austempered ductile iron
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Peculiar hydrogen bonding behaviour of water molecules inside the aqueous nanochannels of lyotropic liquid crystals
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The Attitudes of Polish Women towards Breastfeeding Based on the Iowa Infant Feeding Attitude Scale (IIFAS)
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Grid-Forming Operation of Energy-Router Based on Model Predictive Control with Improved Dynamic Performance
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Corrosion-erosion damage of heat exchanger tubes by desalted crude oil flowing at shell side
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Technological features of forming the quality characteristics of the surface layer during diamond smoothing in the integrated processing
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Modelowanie asymetrycznego procesu walcowania blach bimetalowych = The modeling of asymetrical rolling process of bimetallic plate
PublikacjaW pracy rozważano problem płynięcia plastycznego bimetalowego pasma podczas asymetrycznego procesu walcowania blach bimetalowych. Asymetrię procesu uzyskano w wyniku wprowadzenia różnic w wartościach sił tarcia na powierzchniach styku pasma z poszczególnymi walcami.
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Finding Valence Antibonding Levels while Avoiding Rydberg, Pseudo-continuum, and Dipole-Bound Orbitals
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Attaching Be or Mg to BH3 results in the formation of BeBH3 and MgBH3 molecules capable of forming stable anions
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Effect of process parameters on fouling and stability of MF/UF TiO2 membranes in a photocatalytic membrane reactor
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Influence of the Multiple Injection Moulding and Composting Time on the Properties of Selected Packaging and Furan-Based Polyesters
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Pore Water Pressure Development in Soft Soil due to Installation and Loading of Controlled Modulus Columns
PublikacjaExcess pore water pressure (EPWP) development and decay due to the installation and static loading tests of controlled modulus columns (CMC) in soft soil was measured with piezometers equipped with low air entry (LAE) filters and a piezocone (CPTU) equipped with a high air entry (HAE) filter. The HAE filter allows for detailed detection of EPWP in short time intervals during construction of CMC. The influence zone due to the installation...
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Global Complex Roots and Poles Finding Algorithm Based on Phase Analysis for Propagation and Radiation Problems
PublikacjaA flexible and effective algorithm for complex roots and poles finding is presented. A wide class of analytic functions can be analyzed, and any arbitrarily shaped search region can be considered. The method is very simple and intuitive. It is based on sampling a function at the nodes of a regular mesh, and on the analysis of the function phase. As a result, a set of candidate regions is created and then the roots/poles are verified...
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Particle swarm optimization algorithms for autonomous robots with deterministic leaders using space filling movements
PublikacjaIn this work the swarm behavior principles of Craig W. Reynolds are combined with deterministic traits. This is done by using leaders with motions based on space filling curves like Peano and Hilbert. Our goal is to evaluate how the swarm of agents works with this approach, supposing the entire swarm will better explore the entire space. Therefore, we examine different combinations of Peano and Hilbert with the already known swarm...
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Mechanical properties of polyester reinforced PVC coated fabric subjected to biaxial loading of creep type
PublikacjaThe goal of the current study is to analyze the basic mechanical properties of the architec-tural fabric VALMEX, which is a composite material built of reinforcing polyester thread families and both sides PVC coated. The material was firstly subjected to biaxial loading of creep type for about 48 hours. The stress levels of the creep loading in two main or-thogonal directions of the fabric (commonly called the warp and fill directions)...
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Reliability assessment of an OVH HV power line truss transmission tower subjected to seismic loading
PublikacjaThe study focuses on the reliability of a transmission tower OS24 ON150 + 10, an element of an OVH HV power line, under seismic loading. In order to describe the seismic force, the real-life recording of the horizontal component of the El Centro earthquake was adopted. The amplitude and the period of this excitation are assumed random, their variation is described by Weibull distribution. The possible space state of the phenomenon...
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A framework for onboard assessment and monitoring of flooding risk due to open watertight doors for passenger ships
PublikacjaPost-accident safety of ships is governed by damage stability, affected by watertight subdivisions which limit accidental flooding. This is important for passenger ships with watertight doors (WTDs) often fitted in the bulkheads. Awareness of the ship flooding risk due to open WTDs and the conditions under which the associated risk level changes are prerequisites for proactive risk mitigation. Accident risk is often expressed as...