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Binding of anionic Pt(ii) complexes in a dedicated organic matrix: towards new binary crystalline composites
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The importance of individual spray properties in performance improvement of a urea-SCR system employing flash-boiling injection
PublicationThe appropriate mixing of a urea–water solution (UWS) with exhaust gases in a selective catalytic reduction system is crucial to efficiently reduce nitrogen oxides and diminish the deposition of liquid wall film. One of the methods to enhance the mixing of the UWS with the exhaust gases is a flash-boiling injection. Its positive effect has been linked with a reduced Sauter mean diameter (SMD) and improved evaporation, but the...
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Electron Binding Capabilities of Some Silylenes Having Small Singlet−Triplet Splittings or Triplet Ground States
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Strength of the Lewis–Brønsted Superacids Containing In, Sn, and Sb and the Electron Binding Energies of Their Corresponding Superhalogen Anions
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Identification and characterization of single-stranded DNA-binding protein from the facultative psychrophilic bacteria Pseudoalteromonas haloplanktis
PublicationSingle-stranded DNA-binding protein (SSB) plays an important role in DNA metabolism such as DNAreplication, repair, and recombination, and is essential for cell survival. This study reports on the ssb-likegene cloning, gene expression and characterization of a single-stranded DNA-binding protein of Pseudoal-teromonas haloplanktis (PhaSSB) and is the first report of such a protein from psychrophilic microorganism.PhaSSB possesses...
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In Vitro Studies on the Relationship Between the Antioxidant Activities of Some Berry Extracts and Their Binding Properties to Serum Albumin
PublicationThe aim of this study was to investigate the possibility to use the bioactive components from cape gooseberry (Physalis peruviana), blueberry (Vaccinium corymbosum), and cranberry (Vaccinium macrocarpon) extracts as a novel source against oxidation in food supplementation. The quantitative analysis of bioactive compounds (polyphenols, flavonoids, flavanols, carotenoids, and chlorophyll) was based on radical scavenging spectrophometric assays...
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Heat Transfer During Pool Boiling of Water, Methanol and R141b on Porous Coated Horizontal Tube Bundles
PublicationThis paper presents the results of experimental investigation of water, methanol and R141b refrigerant boiling on horizontal porous coated tube bundles supposed to represent a flooded-type evaporator. Experiments were carried out for a bundle of 19 tubes in triangular layout for two pitch-to-diameter ratio values – 1.7 and 2.0 – in atmospheric and sub-atmospheric pressure conditions. Average heat transfer coefficients – both local,...
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Taq DNA polymerase fused with DNA binding protein with increased resistance to inhibitors from clinical samples
PublicationNowadays PCR method is commonly used in molecular diagnostic. However, in many cases PCR is limited, by the presence of inhibitory substances in biological, soil or food samples Efficiency and fidelity of amplification is strongly connected with DNA polymerase and reaction conditions. To meet the requirements of modern diagnostic methods it is essential to seeking for new DNA polymerases with better properties useful in these field....
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Specific Binding of Cholesterol to the Amyloid Precursor Protein: Structure of the Complex and Driving Forces Characterized in Molecular Detail
PublicationC99 is the C-terminal membrane-bound fragment of the amyloid precursor protein that is cleaved by γ-secretase to release Aβ peptides, the hallmark of Alzheimer’s disease (AD). Specific interactions of C99 with cholesterol have been proposed to underlie the recognized role of cholesterol in promoting amyloidogenesis. By using molecular dynamics simulations, we studied cholesterol binding to C99 in a lipid bilayer. We determined...
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Heat transfer and pressure drop during flow boiling of refrigerant/oil mixture inside smooth tube
PublicationW pracy przedstawiono wyniki badań współczynnika przejmowania ciepła i spadku ciśnienia podczas wrzenia czystych oraz zaolejonych czynników chłodniczych (R22, R134a, R407C) wrzących w poziomej stalowej rurce.
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Synthesis and SAR Studies of Antibacterial Peptidyl Derivatives Based upon the Binding Site of Human Cystatin C
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Molecular dynamics study of a gelsolin-derived peptide binding to a lipid bilayer containing phosphatidylinositol 4,5-bisphosphate
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Fibronectin-, vitronectin- and laminin-binding proteins at the cell walls of Candida parapsilosis and Candida tropicalis pathogenic yeasts
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Molecular simulations study of ligand-release mechanism in an odorant-binding protein from the southern house mosquito
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Novel single-stranded DNA-binding proteins from extreme psychrophilic bacterium Psychromonas ingrahamii 37
PublicationWe report the identification and characterization of the single-stranded DNA binding protein (SSB) from extreme psychrophilic bacterium Psychromonas ingrahamii 37 (PinSSB) that grows expotentially at -12°C and may well grow at even lower temperatures. PinSSB is one of the largest known bacterial SSB protein consisting 222 amino acid residues with a calculated molecular mass of 25.1 kDa. The analysis by gel filtration chromatography...
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The termostability, bioactive compounds and antioxidant activity of some vegetables subjected to different durations of boiling: investigation in vitro.
PublicationThis research was performed in order to compare the water and acetone extracts of raw and boiled for 10, 20, 40 and 60 min Korean lotus roots (KLR) and Polish white onion (PWO) in the contents of theirbioactive compounds, antioxidant activity and thermostability. It was found that polyphenols (mg GAE/g), flavanols (mg GAE/g), flavonoids (mg CE/g), anthocyanins(mg CGE/kg) and tannins (mg CE/g) in water extract of raw lotus roots...
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Characterization of exceptionally thermostable single-stranded DNA-binding proteins from Thermotoga maritima and Thermotoga neapolitana
PublicationBACKGROUND: In recent years, there has been an increasing interest in SSBs because they find numerous applications in diverse molecular biology and analytical methods.RESULTS: We report the characterization of single-stranded DNA binding proteins (SSBs) from the thermophilic bacteria Thermotoga maritima (TmaSSB) and Thermotoga neapolitana (TneSSB). They are the smallest known bacterial SSB proteins, consisting of 141 and 142 amino...
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Membrane Sterols Modulate the Binding Mode of Amphotericin B without Affecting Its Affinity for a Lipid Bilayer
PublicationMembrane-active antibiotics are known to selectively target certain pathogens based on cell membrane properties, such as fluidity, lipid ordering, and phase behavior. These are in turn modulated by the composition of a lipid bilayer and in particular by the presence and type of membrane sterols. Amphotericin B (AmB), the golden standard of antifungal treatment, exhibits higher activity toward ergosterol-rich fungal membranes, which...
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Highly Conserved Homotrimer Cavity Formed by the SARS-CoV-2 Spike Glycoprotein: A Novel Binding Site
PublicationAn important stage in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) life cycle is the binding of the spike (S) protein to the angiotensin converting enzyme-2 (ACE2) host cell receptor. Therefore, to explore conserved features in spike protein dynamics and to identify potentially novel regions for drugging, we measured spike protein variability derived from 791 viral genomes and studied its properties by molecular...
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Mapping the Structural and Dynamic Determinants of pH-Sensitive Heparin Binding to Granulocyte Macrophage Colony Stimulating Factor
PublicationGranulocyte macrophage colony stimulating factor (GMCSF) is an immunomodulatory cytokine that is harnessed as a therapeutic. GMCSF is known to interact with other clinically important molecules, such as heparin, suggesting that endogenous and administered GMCSF has the potential to modulate orthogonal treatment outcomes. Thus, molecular level characterization of GMCSF and its interactions with biologically active compounds is critical...
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Structure-activity relationship study of tetrapeptide inhibitors of the Vascular Endothelial Growth Factor A binding to Neuropilin-1
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Jolanta Łopatowska dr inż.
PeopleJolanta Łopatowska, assistant professor at the Department of Management Engineering and Quality at the Faculty of Management and Economics, is a graduate of the Faculty of Electronics at Gdańsk University of Technology and Institute of Organization and Design of Production Systems at Gdańsk University of Technology. She obtained Ph.D. degree in the discipline of Economic Science. Her scientific and research interests focus on organizationally...
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Study on Methods to Control Interstory Deflections
PublicationOne of the possibilities to prevent building pounding between two adjacent structures is to consider appropriate in-between separation distance. Another approach might be focused on controlling the relative displacements during seismic excitations. Although the majority of building codes around the world recommend the use of some equations of various distances between structures to avoid pounding; a lot of reports after earthquakes...
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The Ellenbogen's "Matter as Software" Concept for Quantum Computer Implementation: III. Selection of X@C60 Molecular Building Blocks (MBBs) for Tip-Based Nanofabrication (TBN) of Trapped Neutral Atom Quantum Computing Devices
PublicationThe selection of guest atoms X of X@C60 MBBs for TBN of trapped neutral atom quantum computing devices is reported. Assuming the all-optical quantum computing as a final target stage, the two criteria are most important: the charge q accumulated on the C60 host must be as low as possible, and the atom X must have one or more available excited states within the band falling into the low energy window of neutral C60 molecule electronic...
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Museum Institutions in Monuments - Positive and Negative Aspects of Adaptation: The New Amber Museum and Museum of Science in Gdansk, Poland
PublicationThe issue of the creation and location of new museums is a current topic. The decision of where and how to create new museum facilities will impact successful function in the future. Museums are either located in newly designed buildings or in existing buildings. In general, existing buildings adapted for museum use are either formally under conservational protection or not. With regard to museum location in preserved monuments,...
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Museums of Gdansk - Tourism Products or Signs of Remembrance?
PublicationMuseum buildings constitute a significant element in the composition and functionality of contemporary cities. They are both their attractions and landmarks. The article presents a case study illustrating the relation between museum buildings and their location, as well as the showcased exhibition. The article aims at demonstrating the way in which those elements form a harmonious whole - a cultural tourism product affecting the...
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Predicting Value of Binding Constants of Organic Ligands to Beta-Cyclodextrin: Application of MARSplines and Descriptors Encoded in SMILES String
PublicationThe quantitative structure–activity relationship (QSPR) model was formulated to quantify values of the binding constant (lnK) of a series of ligands to beta–cyclodextrin (β-CD). For this purpose, the multivariate adaptive regression splines (MARSplines) methodology was adopted with molecular descriptors derived from the simplified molecular input line entry specification (SMILES) strings. This approach allows discovery of regression...
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Soft Sensor Application in Identification of the Activated Sludge Bulking Considering the Technological and Economical Aspects of Smart Systems Functioning
PublicationThe paper presented the methodology for the construction of a soft sensor used for activated sludge bulking identification. Devising such solutions fits within the current trends and development of a smart system and infrastructure within smart cities. In order to optimize the selection of the data-mining method depending on the data collected within a wastewater treatment plant (WWTP), a number of methods were considered, including:...
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A semi-empirical method for calculation of flow boiling heat transfer coefficients for conventional channels and small diameter tubes
PublicationW pracy przedstawiono rozważania na temat modelowania dwufazowego przepływu wrzącego w kanałach konwencjonalnych i w kanałach o małej średnicy. Przedstawiono modyfikację korelacji zaproponowanej wcześniej przez J. Mikielewicza na podstawie nowych danych eksperymentalnych, uzyskanych dla kanałów o małej średnicy. Bank danych obejmował ponad 460 punktów pomiarowych dla czynników R141b, R134a, R113, R123, R12, R11 i wody. Uzyskano...
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Improved semi-empirical method for determination of heat transfer coefficient in flow boiling in conventional and small diameter tubes
PublicationPraca dotyczy przedstawienia poprawionego modelu umożliwiającego wyznaczanie współczynnika przejmowania ciepła w kanałach o małych średnicach jaj i tych tradycyjnych. Model zweryfikowano na 6 czynnikach chłodnuiczych uzyskując bardzo zadowalającą zgodność.
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A common method for calculation of flow boiling and flow condensation heat transfer coefficients in minichannels with account of nonadiabatic effects
PublicationW pracy przedstawiono metodę ogólną wyznaczania współczynników przejmowania ciepła podczas wrzenia w przepływie i kondensacji w przepływie w minikanałach z uwzględnieniem efektu nieadiabatycznego. Uwzględnia ona wpływ modyfikacji naprężeń stycznych na granicy ciecz-para na wymianę ciepła.
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Novel DNA-binding protein from Nanoarchaeum equitans Kin4-M binds all kinds of nucleic acids
PublicationNanoarchaeum equitans is the only known representative of Archaea phylum Nanoarchaeota and stands out as one of the tiniest known living organism. What is more it has smallest genome, which is only 490.885 base pairs long. It is also one of the most compact genomes. According to predictions about 95% of the DNA encodes proteins or stable RNA. Nanoarchaeum equitans lacks genes for most vital metabolic pathways including lipid, cofactor,...
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Influence of temperature and interactions with ligands on dissociation of dsDNA and ligand-dsDNA complexes of various types of binding : an electrochemical study.
PublicationSeveral medicinally important compounds that bind to dsDNA strands via intercalation (C-1311, C-1305, EtBr), major groove binding (Hoechst 33258) and covalent binding (cis-Pt) were examined. The obtained results suggest that both the transfer of conformation B to C and the denaturation process, for the ligand-dsDNA complexes, except for covalently bound cis-Pt, took place at higher temperatures compared to the unbound helix. Furthermore,...
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Experimental investigation of M-shape heat transfer coefficient distribution of R123 flow boiling in small-diameter tubes
PublicationW publikacji przedstawiono wyniki badań wrzenia czynnika R123 w srebrnych rurkach o małych średnicach (średnice wewnętrzne wynosiły odpowiednio 1.15 mm i 2.3 mm). Badania przeprowadzono w szerokim zakresie stopnia suchości pary (0.01-0.9), gęstości strumienia masy (650-3000 kg/(m2s)) oraz gęstości strumienia ciepła (40-80 kW/m2). W badaniach wykazano, że istnieją dwa lokalne maksima współczynnika przejmowania ciepła w jego profilu...
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Fusion of Taq DNA polymerase with single-stranded DNA binding-like protein of Nanoarchaeum equitans—Expression and characterization
PublicationDNA polymerases are present in all organisms and are important enzymes that synthesise DNA molecules. They are used in various fields of science, predominantly as essential components for in vitro DNA syntheses, known as PCR. Modern diagnostics, molecular biology and genetic engineering need DNA polymerases which demonstrate improved performance. This study was aimed at obtaining a new NeqSSB-TaqS fusion DNA polymerase from the...
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Measuring moisture damage of asphalt mixtures: The development of a new modified boiling test based on color image processing
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Non-isothermal effects in a common method for calculation of heat transfer coefficient in flow boiling and flow condensation in minichannels
PublicationW pracy przestawiono efekty nieizotermiczne w metodzie wyznaczania współczynnika przejmowania ciepła podczas wrzenia w przepływie oraz kondensacji w przepływie w minikanałach. Wyniki obliczeń porównano z badaniami eksperymentalnymi z literatury, uzyskując dobrą zgodność.
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Application of reversed-phase thin layer chromatography and QSRR modelling for prediction of protein binding of selected β-blockers
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Molecular mechanism and energetics of coupling between substrate binding and product release in the F 1 -ATPase catalytic cycle
PublicationF1-ATPase is a motor protein that couples the rotation of its rotary γ subunit with ATP synthesis or hydrolysis. Single-molecule experiments indicate that nucleotide binding and release events occur almost simultaneously during the synthesis cycle, allowing the energy gain due to spontaneous binding of ADP to one catalytic β subunit to be directly harnessed for driving the release of ATP from another rather than being dissipated...
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Experimental study of flow boiling pressure drop and heat transfer of R1233zd(E) at moderate and high saturation temperatures
PublicationThe paper presents the results of experimental study of flow boiling of R1233zd(E) in minichannel at moderate and high saturation temperatures. The heat transfer coefficient and pressure drop were measured for flow boiling in a stainless steel tube with 2 mm inside diameter and a length of 300 mm. Experiment has been conducted for saturation temperatures ranging from 83 to 145 °C which corresponds to values of reduced pressures...
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Badania wrzenia R22 w rurkach z powłoką porowatą. Investigation of R22 flow boiling in porous tubes.
PublicationW pracy przedstawiono wyniki pomiarów współczynnika przejmowania ciepła przy wrzeniu w przepływie R22 w poziomej rurce z aluminiową powłoką porowatą. Otrzymane dane odniesiono do wyników uzyskanych dla gładkiej stalowej rurki oraz rurki typu microfin. Rurka gładka i z powłoką porowatą była wykonana ze stali nierdzewnej o grubości ścianki 0.6 mm. Grubość powłoki porowatej wynosiła 0,2 mm. Eksperymenty prowadzono przy stopniu suchości...
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Optimum shapes and dimensions of rubber bumpers in order to reduce structural pounding during seismic excitations
PublicationLarge displacement of structures observed during seismic excitations may lead to collisions between two adjacent, insufficiently-separated buildings and may result in major damages of both of them. In many building codes, appropriate equations or approximately recommended distances between structures in order to avoid pounding hazard have been introduced. Unfortunately, further, more detailed considerations show that safety situation...
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Tomasz Falborski dr inż.
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Symulacja skrócenia procesu kompletacji z wykorzystaniem karty przebiegu czynności na przykładzie wybranego marketu DIY
PublicationW artykule przeanalizowano zagadnienia dotyczące gospodarki magazynowej, wykorzystania infrastruktur magazynowej i manipulacyjnej oraz zagospodarowania przestrzeni magazynowej w zakresie realizowanych procesów w magazynie wybranego marketu budowlanego DIY (ang. Do-It-Yourself). Z wykorzystaniem takich narzędzi, jak mapa procesu oraz karta przebiegu czynności przeprowadzono analizę procesu kompletacji towarów dla wybranego zamówienia...
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Magdalena Apollo dr inż.
People2017 - PhD in Civil Engineering, thesis: Risk management in construction investments related to urban regeneration projects, Gdansk University of Technology IX 2012–VI 2013 - Postgraduate Studies at Gdynia Maritime University: Research Project Management (IPMA D Certificate) 2010 – MSc in Management and Marketing, Gdansk University of Technology 2007 – MSc in Civil Engineering, Gdansk University of Technology 2007-2010 - structural...
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The Ellenbogen's "Matter as Software" Concept for Quantum Computer Implementation: II Bonding Between the C60 and X@C60 Molecules as Available Molecular Building Blocks (MBBs) for Tip-Based Nanofabrication (TBN) of Quantum Computing Devices
PublicationThe binding energy, BE of the X@C60-X@C60 homodimer and the X@C60-Y@C60 heterodimer resulting from the bond formation between the occupied X@C60 MBB and the C60 molecule was studied by means of semiempirical PM7 calculations, where X and Y denote atoms from H to Bi, excluding Tc and lanthanides. All possible combinations of N = 68 guest atoms were considered, which resulted in K = 2346 of different calculated dimers of (X@C60-Y@C60)...
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Sacrum - Profanum, Profanum-Sacrum, Przemiany funkcji budowli sakralnych w XX wieku = Sacrum-Profanum, Profanum-Sacrum, Transformations of function of sacral buildings in 20th century
PublicationPublikacja dotyczy aktualnych problemów zwiazanych z procesami desakralizacji i resakralizacji obiektów. złozony problem dotyczy krajów zarówno Europy wschodniej i zachodniej. Ulegają mu obiekty różnych obrządków i wyznań. Problem dotyczy zarówno samej architektury jak i przemian społecznych.
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Historic railway stations, documentation and revitalization of the railway infrastructure facilities - protection of cultural and social heritage
PublicationThe article presents problems of documentation and adaptation of buildings which constitute the cultural heritage of the railway infrastructure facilities in Pomerania in Poland. Shows the potential and possibilityto be adopted for various purposes. This problem affects many sites and buildings, railway stations, railway warehouses, residential buildings, technical buildings, water towers, trackman shelters, bridges, viaducts,...
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The role of isolated farmsteads in the open landscape protection on the example of Kashubia
PublicationAs a result of the social and economic transformation of rural areas, open landscapes are disappearing. Former farmsteads are being devastated or beginning to lose their landscape context due to the spread of residential building development. At the same time, in many places, the farmstead form is clearly legible and remains an element with which the view is structured and enriched. The article was aimed at drawing attention to...
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Aerodynamics in the education of prospective architects
PublicationThe inclusion of issues of aerodynamics in the education of architecture students is discussed in this article. The field of aerodynamics knowledg of the nature of wind phenomena around building developments. It is especially important to know how to influence the occurrence of such phenomena by means of shaping buildings through architectural and urban design. The method applied for working with Master’s degree students in...