Filters
total: 4330
-
Catalog
- Publications 3726 available results
- Journals 39 available results
- Conferences 10 available results
- Publishing Houses 1 available results
- People 63 available results
- Projects 3 available results
- Laboratories 2 available results
- e-Learning Courses 41 available results
- Events 5 available results
- Open Research Data 440 available results
displaying 1000 best results Help
Search results for: protein folding
-
Rapeseed Meal Waste Biomass as Single-Cell Protein Substrate for Nutritionally-Enhanced Feed Component
Publication -
Structural and dynamic changes adopted by EmrE, multidrug transporter protein—Studies by molecular dynamics simulation
PublicationEmrE protein transports positively charged aromatic drugs (xenobiotics) in exchange for two protons and thus provides bacteria resistance to variety of drugs. In order to understand how this protein may recognize ligands, the monomer and asymmetric apo-form of the EmrE dimer embedded in a heterogeneous phospholipid (POPE + POPG) membrane were studied by molecular dynamics simulations. Dimer is regarded as a functional form of the...
-
A cryptic ribosome binding site, false signals in reporter systems and avoidance of protein translation chaos
PublicationThe expression of reporter gene may be induced by activation of cryptic signalling sequences, as we found while constructing the mutS-lacZ fusion gene. We cloned the Escherichia coli lacZ gene encoding beta-galactosidase into a plasmid vector carrying the Thermus thermophilus mutS gene. The clones expected to produce beta-galactosidase as the C-terminal fusion were selected for the complementation of beta-galactosidase activity...
-
Methodology of Selecting the Optimal Receptor to Create an Electrochemical Immunosensor for Equine Arteritis Virus Protein Detection
PublicationThe study reports a methodology of selecting the optimal receptor to create an electrochemical immunosensor for equine arteritis virus (EAV) protein detection. The detection was based on antigen recognition by antibodies immobilized on gold electrodes. Modification steps were controlled by electrochemical impedance spectroscopy and cyclic voltammetry measurements. In order to obtain the impedance immunosensor with the best parameters,...
-
Improvements and new functionalities of UNRES server for coarse-grained modeling of protein structure, dynamics, and interactions
PublicationIn this paper we report the improvements and extensions of the UNRES server (https://unres-server.chem.ug.edu.pl) for physics-based simulations with the coarse-grained UNRES model of polypeptide chains. The improvements include the replacement of the old code with the recently optimized one and adding the recent scale-consistent variant of the UNRES force field, which performs better in the modeling of proteins with the β and the...
-
Silica In Silico: A Molecular Dynamics Characterization of the Early Stages of Protein Embedding for Atom Probe Tomography
PublicationA novel procedure for the application of atom probe tomography (APT) to the structural analysis of biological systems, has been recently proposed, whereby the specimen is embedded by a silica matrix and ablated by a pulsed laser source. Such a technique, requires that the silica primer be properly inert and bio-compatible, keeping the native structural features of the system at hand, while condensing into an amorphous, glass-like...
-
Defining a novel domain that provides an essential contribution to site-specific interaction of Rep protein with DNA
PublicationAn essential feature of replication initiation proteins is their ability to bind to DNA. In this work, we describe a new domain that contributes to a replication initiator sequence-specific interaction with DNA. Applying biochemical assays and structure prediction methods coupled with DNA–protein crosslinking, mass spectrometry, and construction and analysis of mutant proteins, we identified that the replication initiator of the...
-
Formation of Protein Networks between Mucins: Molecular Dynamics Study Based on the Interaction Energy of the System
PublicationMolecular dynamics simulations have been performed for a model aqueous solution of mucin. As mucin is a central part of lubricin, a key component of synovial fluid, we investigate its ability to form cross-linked networks. Such network formation could be of major importance for the viscoelastic properties of the soft-matter system and crucial for understanding the lubrication mechanism in articular cartilage. Thus,the inter- and...
-
Structural and dynamic insights on the EmrE protein with TPP+ and related substrates through molecular dynamics simulations
PublicationEmrE is a bacterial transporter protein that forms an anti-parallel homodimer with four transmembrane helices in each monomer. EmrE transports positively charged aromatic compounds, such as TPP+ and its derivatives. We performed molecular dynamics (MD) simulations of EmrE in complex with TPP+, MeTPP+, and MBTPP+ embedded in a membrane. The detailed molecular properties and interactions were analysed for all EmrE-ligand complexes....
-
Use of Neural Networks in Diagnostics of Rolling-Element Bearing of the Induction Motor
Publication -
Modeling of Heat Source Based on Parameters of Electron Beam Welding Process
Publication -
Numerical Simulation of Electron Beam Welding Process of Inconel 706 Sheets
Publication -
Impact of intense rains and flooding on mercury riverine input to the coastal zone
Publication -
The effect of disturbance caused by rivers flooding on ground beetles (Coleoptera: Carabidae)
Publication -
Influence of the substrate loading on the quality and diameter distribution of SWCNT in alcohol‐CVD
Publication -
Analysis of the amount of retained austenite in the structure of steel rolls for sheet rolling
Publication -
Interlayer defect evolution in an coating system on steel under hydromechanical loading
PublicationZaprezentowano wyniki pomiarów impedancyjnych obszaru międzywarstwowego w systemie powłokowym poddanym naprężeniom. Przedstawiono nowy sensor który jest zdolny do detekcji defektów w obszarze międzywarstwowym. Dwuwarstwowy system powłokowy przeznacziony do zastosowań morskich zbadano w celu określenia jego odporności na oddziaływanie cyklicznych naprężeń i zanurzeń w 3% roztworze NaCl.
-
The Use of NaOH Solutions for Fouling Control in a Membrane Bioreactor: A Feasibility Study
Publication -
Bonding interactions in oxydiacetate and thiodiacetate cobalt(II) and nickel(II) complexes
Publication -
Finding Temperature Distribution at Heat Recovery Unit Using Genetic Algorithms
Publication -
An Approximate Linear Analysis of Structures Utilizing Incremental Loading of Force Method
Publication -
Tribological performance of PTFE-metal binary coatings in rolling/sliding contact
PublicationTribological performance of surface coatings with embedded PTFE reservoirs in rolling/sliding contact is reported. Using two different coating materials and two shapes and patterns of PTFE reservoirs test samples in the form of discs were prepared and tested in a four-ball contact configuration under loads corresponding to nominal contact pressure of 0.5 and 1.0 GPa. It was found that one coating, namely aluminium-bronze with embedded...
-
Mersenne Number Finding and Collatz Hypothesis Verification in the Comcute Grid System
PublicationIn this chapter, some mathematic applications have been described to test scalability of the Comcute grid system. Especially, a verification of the Collatz hypothesis and finding Mersenne numbers were applied to prove the scalability and high performance of this grid system. Results were compared with outcomes obtained by the other grid systems.
-
Nanotubular Ti Oxide Layers for Enhancement of Bone-Implant Bonding and Bioactivity
PublicationAbstrakt artykułu pt. ''Nanotubular Ti Oxide Layers for Enhancement of Bone-Implant Bonding and Bioactivity''. The paper describes techniques to improve the bioactivity of titanium and ehnahnce the bone-implant bonding ability by the electrochemical anodization to fabricate titania nanotubular oxide layer.
-
Two tests for adhesive bonding long term characterization: principles and applications
PublicationThis article describes recent refinement of the traditional wedge test technique used to characterize durability of the adhesive joints. We propose two types of measuring protocols to monitor precisely and continuously the propagation of an "effective" crack during long term mode I fracture mechanic test. First method is directly derived from the traditional wedge test technique and consist in monitoring the surface strain of adherent...
-
Nanotubular Titanium Oxide Layers for Enhancement of Bone-Implant Bonding and Bioactivity
PublicationThe present paper describes the techniques to improve the bioactivity of titanium and enhance the bone-implant bonding ability by the electrochemical anodization to fabricate titania nanotube arrays (TiO2).
-
Determining diffusible hydrogen amounts using the mercury method. Welding International
PublicationW artykule przedstawiono szczegółową charakterystykę procedury oznaczania ilości wodoru dyfundującego metodą rtęciową na tle innych metod badawczych i aktualnego stanu wiedzy dotyczącego rozpatrywanego zagadnienia. Omówiono klasyfikację wodoru występującego w złączu spawanym oraz metody oznaczania ilości wodoru dyfundującego w stopiwie ze zwróceniem szczególnej uwagi na metodę rtęciową jako metodę podstawową. Zestawiono zależności...
-
A simplified model of 3-D pipe system conveying flowing liquid
PublicationThe paper presents a model reduction technique of a 3-D pipe system with flowing liquid. In the analysis and design of control (mechatronic) systems it is useful to work with simple, low order models. A hybrid reduced order model is proposed. The system model consists of two parts, the modal model and the finite element model.
-
POPULATION-BASED MULTI-AGENT APPROACH TO SOLVING MACHINE LEARNING PROBLEMS
Publication -
Effect of welding conditions on susceptibility to cold cracking of underwater welded joints
PublicationPrzedstawiono wybrane aspekty spawalności stali przy spawaniu pod wodą metodą lokalnej komory suchej. Zwrócono szczególną uwagę na skłonność do tworzenia peknięć zimnych w SWC. Przy pomocy planowania doświadczeń określono ilościowy wpływ parametrów spawania na naprężenia krytyczne z próby implant.
-
Representation of a built-up area in the numerical simulation of urban flash flooding
PublicationPrzedstawiono wyniki modelowania powodzi miejskiej przy pomocy dwuwymiarowych równań de Saint-Venanta. Równania rozwiązano metodą objętości skończonych. Zaprezentowano dwie techniki reprezentacji obszarów zabudowanych w numerycznej symulacji powodzi - bezpośrednie wykluczenie budynków z siatki numerycznej oraz zastąpienie grup budynków terenami o znacznie zwiększonej szortkości powierzchni. W celu oceny wykorzystanych metod wykonano...
-
Determining PAHs and PCBs in aqueous samples: finding and evaluating sources of error
PublicationW pracy opisano wyniki badań modelowych (z wykorzystaniem dopowiednich roztworów wzorcowych), których celem było wykrycie źródeł błędów oznaczeń oraz oszacowanie ich wielkości. Przedmiotem badań było oszacowanie wpływu takich procesów jak:- adsorpcja na ściankach naczyń,- adsorpcja na cząstkach materii zawieszonej,- usuwanie nadmiaru rozpuszczalnika (z ekstraktu)na wyniki oznaczeń końcowych.
-
The influence of the welding thermal cycles on corrosion resistance of duplex stainless steel
PublicationBadano skłonnośc strefy wpływu ciepła spoin ze stali dupleks do korozyjnego pękania narężeniowego. Wykonano próby korozyjne z wykorzystaniem metody SSRT w środowisku korozyjnym wrzącego MgCl2. Wykazano, że duży udział ferrytu w strukturze SWC pogarsza odpornośc na korozję. Badania metalograficzne na mikroskopie lektronowym wykazały różne sposoby propagacji pęknięcia zależnie od zawartości austenitu w strukturze SWC.
-
Explicit accumulation model for granular materials under multiaxial cyclic loading.
PublicationPróba korelacji parametrów modelu akumulacyjnego piasku z wynikami badań dynamicznych piasku.
-
Compaction of freshly pluviated granulates under uniaxial and multiaxial cyclic loading.
Publication.
-
Interplay of hydrogen bonding and aryl-perfluoroaryl interactions in construction of supramolecular aggregates
PublicationThe stacking between aryl and perfluoroaryl units is an important class of the aromatic – aromatic interactions that has attracted rapidly growing interest in recent years. Continuing interest of our group in this subject it had been prepared three new complexes of pentafluorobenzoic acid with benzyl alcohol, 4-methylbenzyl alcohol and 4-tert-butylbenzyl alcohol and in the next step investigated their self-assembly modes by...
-
Finding the protection of lighting grounding with estimating its impulse impedance componets
PublicationOmówiono metodę rozdzielania składowych impedancji udarowej uziemień. Podano wskazania dotyczące oceny jakości ochrony odgromowej na podstawie wartości składowych impedancji udarowej.
-
Global Complex Roots and Poles Finding Algorithm in C × R Domain
PublicationAn algorithm to find the roots and poles of a complex function depending on two arguments (one complex and one real) is proposed. Such problems are common in many fields of science for instance in electromagnetism, acoustics, stability analyses, spectroscopy, optics, and elementary particle physics. The proposed technique belongs to the class of global algorithms, gives a full picture of solutions in a fixed region ⊂ C × R and...
-
Fatigue behaviour of SLM maraging steel under variable-amplitude loading
PublicationOne of the most challenging issues for additive manufactured materials is fatigue endurance. Engineering components often operate under complex, variable amplitude loadings, in which existing technological imperfections promote fatigue cracks growth and damage of elements eventually. In this study the effects of different variable-amplitude strain levels on fatigue life, 18Ni300 steel was tested. The work presents various behaviours...
-
A self-stabilizing algorithm for finding a spanning tree in a polynomial number of moves
PublicationW pracy rozważa się rozproszony model obliczeń, w którym struktura systemu jest reprezentowana przez graf bezpośrednich połączeń komunikacyjnych. W tym modelu podajemy nowy samostabilizujący algorytm znajdowania drzewa spinającego. Zgodnie z naszą wiedzą jest to pierwszy algorytm dla tego problemu z gwarantowaną wielomianową liczbą ruchów.
-
Rolling Resistance And Tire/Road Noise on Rubberized Asphalt Pavement In Poland
PublicationThe paper presents results of tire/road noise and rolling resistance measurements performed on stone-matrix asphalt (SMA) that contains rubberized asphalt developed and produced by the company in Poland. Bituminous binder was modified with polymer and additive of crumb rubber. First observations of asphalt mixture with the new kind of modified bitumen used on the field section are presented. Rolling resistance of passenger car...
-
Rolling resistance and tyre/road noise on rubberised asphalt pavement in Poland
PublicationThe paper presents results of tyre/road noise and rolling resistance measurements performed on stone mastics asphalt (SMA) that contains rubberised asphalt, developed and produced by a refinery in Poland. Bituminous binder was modified with polymer and addition of crumb rubber. The first observations of asphalt mixture with the new kind of modified bitumen used on the field section are presented. Rolling resistance of passenger...
-
Efficient Complex Root Finding Algorithm for Microwave and Optical Propagation Problems
PublicationArticle relates to the use of innovative root finding algorithm (on a complex plane) to study propagation properties of microwave and optical waveguides. Problems of this type occur not only in the analysis of lossy structures, but also in the study of complex and leaky modes (radiation phenomena). The proposed algorithm is simple to implement and can be applied for functions with singularities and branch cuts in the complex plane...
-
Underwater Wet Repair Welding of API 5L X65M Pipeline Steel
PublicationThis paper presents results of the research of effect of polymer insulation of pipeline made of API 5L X65M steel as well as underwater wet welding parameters on properties of joints made by covered electrodes. Effect of heat input on structure and hardness of joints during repair of underwater pipeline was analyzed. Welding defects like microcracks, micro-lacks of fusion, slag inclusions, as well as HAZ hardness increase over...
-
An O ( n log n ) algorithm for finding edge span of cacti
PublicationLet G=(V,E) be a nonempty graph and xi be a function. In the paper we study the computational complexity of the problem of finding vertex colorings c of G such that: (1) |c(u)-c(v)|>=xi(uv) for each edge uv of E; (2) the edge span of c, i.e. max{|c(u)-c(v)|: uv belongs to E}, is minimal. We show that the problem is NP-hard for subcubic outerplanar graphs of a very simple structure (similar to cycles) and polynomially solvable for...
-
A note on an approximative scheme of finding almost homoclinic solutions for Newtonian systems
PublicationIn this work we will be concerned with the existence of an almost homoclinic solution for a perturbed Newtonian system in a finite dimensional space. It is assumed that a potential is C^1 smooth and its gradient is bounded with respect to a time variable. Moreover, a forcing term is continuous, bounded and squere integrable. We will show that the appproximative scheme due to J. Janczewska for a time periodic potential extends to...
-
Analysis of Ceramic Elements with Ring-Crack Defects in Lubricated Rolling Contact
PublicationThe properties of ceramics, specifically low density, high hardness, high temperature capability and low coefficient of thermal expansion are of most interest to rolling element manufacturers. Surface ring cracks on lubricating rolling contact fatigue failure has been studied using numerical fracture analysis. Such cracks are very often found on ceramic bearing balls and decrease fatigue life rapidly. The numerical calculations...
-
Solving Multi-Ship Encounter Situations by Evolutionary Sets of Cooperating Trajectories
PublicationAutor zaproponował nowe podejście do sytuacji kolizyjnych na morzu. Polega ono na zastąpieniu ewolucyjnej trajektorii własnej ewolucyjnym zbiorem trajektorii wszystkich obiektów. Podejście to umożliwia predykcję manewrowania obiektów obcych przy jednoczesnym zachowaniu efektywności algorytmów ewolucyjnych. Dodatkowo, opracowany już wstępnie przez autorów zbiór kryteriów, ograniczeń i operatorów specjalizowanych powinien zapewnić...
-
An approximative scheme of finding almost homoclinic solutions for a class of Newtonian systems
PublicationW niniejszej pracy badamy istnienie rozwiązań prawie homoklinicznych (ang. almost homoclinic solutions) dla pewnej klasy układów Newtona. Rozwiązanie prawie homokliniczne otrzymujemy jako granicę ciągu rozwiązań okresowych dla pewnego ciągu równań różniczkowych.
-
Technologies for Joining and Forming Thin-Walled Structures in the Construction of Transportation Vehicles
PublicationEditorial