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Wyniki wyszukiwania dla: protein folding
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Molecular simulations study of ligand-release mechanism in an odorant-binding protein from the southern house mosquito
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Hyperosmolarity adversely impacts recombinant protein synthesis by Yarrowia lipolytica—molecular background revealed by quantitative proteomics
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Analysis of the Link between the Redox State and Enzymatic Activity of the HtrA (DegP) Protein from Escherichia coli
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t-SNE Highlights Phylogenetic and Temporal Patterns of SARS-CoV-2 Spike and Nucleocapsid Protein Evolution
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Toxoplasma gondii Recombinant antigen AMA1: Diagnostic Utility of Protein Fragments for the Detection of IgG and IgM Antibodies
PublikacjaToxoplasma gondii is an important zoonotic protozoan that infects a wide variety of vertebrates as intermediate hosts. For this reason, the diagnosis of this disease is very important and requires continuous improvement. One possibility is to use recombinant antigens in serological tests. Apical membrane antigen 1 (AMA1), a protein located in specific secretory organelles (micronemes) of T. gondii, is very interesting in regard...
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Structure and evolution of the 4-helix bundle domain of Zuotin, a J-domain protein co-chaperone of Hsp70
PublikacjaThe J-domain protein Zuotin is a multi-domain eukaryotic Hsp70 co-chaperone. Though it is primarily ribosome-associated, positioned at the exit of the 60S subunit tunnel where it promotes folding of nascent polypeptide chains, Zuotin also has off-ribosome functions. Domains of Zuotin needed for 60S association and interaction with Hsp70 are conserved in eukaryotes. However, whether the 4-helix bundle (4HB) domain is conserved remains...
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t-SNE Highlights Phylogenetic and Temporal Patterns of SARS-CoV-2 Spike and Nucleocapsid Protein Evolution
PublikacjaWe propose applying t-distributed stochastic neighbor embedding to protein sequences of SARS-CoV-2 to construct, visualize and study the evolutionary space of the coronavirus. The basic idea is to explore the COVID-19 evolution space by using modern manifold learning techniques applied to evolutionary distances between variants. Evolutionary distances have been calculated based on the structures of the nucleocapsid and spike proteins.
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UNRES-GPU for Physics-Based Coarse-Grained Simulations of Protein Systems at Biological Time- and Size-Scales
PublikacjaThe dynamics of the virus like particles (VLPs) corresponding to the GII.4 Houston, GII.2 SMV, and GI.1 Norwalk strains of human noroviruses (HuNoV) that cause gastroenteritis was investigated by means of long-time (about 30 μs in the laboratory timescale) molecular dynamics simulations with the coarse-grained UNRES force field. The main motion of VLP units turned out to be the bending at the junction between the P1 subdomain (that...
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Reactions on the surface of the implant under the influence of biofilm
PublikacjaThe contact of a biomaterial with the biological environment in in vitro and in vivo tests leads to the production of a particular ecosystem in which the active roles perform both, the material surface and the extracellular matrix protein forming a biofilm. Proteins affect cell and bacteria adhesion processes, biological activity of cells and activation of inflammatory response.The knowledge of the reaction mechanisms active on...
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A hybrid speech codec employing parametric and perceptual coding techniques
PublikacjaW referacie przedstawiono hybrydowy kodek mowy dla zastosowan w komunikacji VoIP wykorzystujący kodowanie parametryczne i percetualne. Sygnał mowy jest dzielony na składowe dźwięczne, które podlegają kodowania perceptualnemu, składowe bezdźwięczne, które kodowane są metodą parametryczną oraz transjenty, które nie są kodowane żadną stratną metodą. Dodatkowo przedstawiono architekturę kodeka, w której perceptualnie kodowana i przesyłana...
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Underwater acoustic communications system with error correction and synchronization coding
PublikacjaNiezawodna transmisja danych w wielodrogowym i niestacjonarnym płytkim kanale podwodnym wymaga zastosowania efektywnej techniki modulacji oraz equalizacji adaptacyjnej. W zaproponowanym artykule w systemie transmisji danych zastosowano modulację OFDM oraz equalizację adaptacyjną opartą o filtrację Kalmana. Ponadto zaimplementowano dwie techniki kodowania: FEC w celu eliminacji błędów transmisji oraz kodowanie pseudoszumowe, którego...
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Speech codec enhancements utilizing time compression and perceptual coding
PublikacjaA method for encoding wideband speech signal employing standardized narrowband speech codecs is presented as well as experimental results concerning detection of tonal spectral components. The speech signal sampled with a higher sampling rate than it is suitable for narrowband coding algorithm is compressed in order to decrease the amount of samples. Next, the time-compressed representation of a signal is encoded using a narrowband...
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Design of three control algorithms for an averaging tank with variable filing
PublikacjaAn averaging tank with variable filling is a nonlinear multidimensional system and can thus be considered a complex control sys-tem. General control objectives of such object include ensuring stability, zero steady state error and achieving simultaneously shortest possible settling time and minimal overshoot. The main purpose of this research work was the modelling and synthesis of three control systems for an averaging tank. In...
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BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
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Agnieszka Potęga dr inż.
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Studies of polypropylene membrane fouling during microfiltration of broth with Citrobacter freundii bacteria
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Evaluation of fouling potential of nanofiltration membranes based on the dynamic contact angle measurements
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Possibilities of using interlayers during diffusion welding of Ti Gr2 and AISI 316L
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The role of organizational and spouse support in solving work-life conflict among migrants.
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Laser assisted forming of the surface layer of Al-Si alloy at cryogenic conditions.
PublikacjaW artykule przedstawiono wpływ powierzchniowego laserowego przetapiania w warunkach kriogenicznych na mikrostrukturę, mikrotwardość i własności korozyjne stopu AlSi13Mg1CuNi. Stwierdzono korzystny wpływ obróbki laserowej na mikrostrukturę, mikrotwardość i odporność na zużycie ścierne badanego stopu aluminium.
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Spectral criterion for high-cycle fatigue of metals under multiaxial random loading
PublikacjaPrzedstawiono kryterium projektowe elementów z metali ciągliwych, poddanych w zakresie wytrzymałości zmęczeniowej wysokocyklowej wieloosiowemu naprężeniu o zerowej wartości średniej. Jest ono oparte na równaniu krzywej Whleradla symetrycznego rozciągania-ściskania i gęstościach widmowych mocy składowych naprężenia. W tym celu wyznaczono równoważne naprężenie w dziedzinie częstości przy założeniu, że składowe rzeczywistego naprężenia...
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Effects of loading pattern and lubricant pressure influence on bearing alloy fatigue characteristics
PublikacjaOpisano wyniki testów zmęczeniowych przeprowadzonych dla stopu łożyskowego AlSn (11,3 Cu 1,2) osadzonego na taśmie stalowej. Doświadczalnie określono wartości obciążeń niszczących dla różnych warunków obciążenia: dla obciążeń zginających wahadłowych, dla obciążeń zginających wahadłowych przy równoczesnym działaniu słabego lub zmiennego ciśnienia w komorze olejowej.
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Floodsar: Automatic mapping of river flooding extent from multitemporal SAR imagery
PublikacjaFloodsar is an open-source tool for automatic mapping of the flood extent from a time series of synthetic aperture radar (SAR) imagery. Floodsar is unsupervised, however, it requires defining the parameters search space, geographical area of interest, and some river gauge observations (e.g. water levels or discharges) time series that overlap temporarily with the SAR imagery. Applications of Floodsar are mainly in real-time monitoring...
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Analysis of coupled coplanar waveguide with ideal bonding wires between ground conductors
PublikacjaPrzedstawiono zmodyfikowaną analizę sprzężonych linii koplanarnych prowadzącą do uproszczenia procesu modelowania struktur wieloprzewodowych zawierających poprzecznie ułożone względem kierunku propagacji fali mostki dla wyrównania potencjałów na odseparowanych przestrzennie przewodach. Wyniki analizy teoretycznej zweryfikowano doświadczalnie uzyskując potwierdzenie poprawności zastosowanego podejścia.
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Interlayer defect evolution in an organic coating system on steel under hydromechanical loading
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The operational method of filling information gaps in satellite imagery using numerical models
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Psychological and physical components in forming preferences on urban greenery management – The case of trees
PublikacjaPublic opinion is increasingly important in managing urban greenery. In this regard, this study demonstrates the importance of sociological (environmental worldviews), psychological (place attachment, perceived benefits of trees), and physical factors (type of building people live in, and urban greenery) in forming residents’ opinions on whether the municipality or landowners should decide about tree removal on private land. Logistic...
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Extended duration running and impulse loading characteristics of an acoustic bearing with enhanced geometry
PublikacjaThis paper presents performance during prolonged running of the acoustic bearing when PZTs are switched off and when they are switched on. The effect of active PZT on shaft’s displacements in X and Y directions is clearly demonstrated. Performance of the acoustic bearing was also assessed when an impulse force was applied to the running shaft at speed. Once again the benefits of having PZTs active are beyond doubt. The instability...
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Improvement of S355G10+N steel weldability in water environment by Temper Bead Welding
PublikacjaThe normalized S355G10 + N steel was chosen for testing, it is used in a variety of applications including the building of offshore structures, which may require repairs in water environment. The main aim of the work was to check susceptibility to cold cracking for fillet welds – Controlled Thermal Severity (CTS) tests and butt welds – Tekken tests and in the next step evaluation of effectiveness of Temper Bead Welding (TBW) application...
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Response of Barley Cultivars, Hordeum vulgare L. to foliar Feeding by Nano Potassium
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The Role of Daylight in Forming the Traditional Space: Classification of Traditional Iranian Daylighting Elements
PublikacjaDaylight character in a space can be defined as the manner in which daylight permeates and is dispersed in that space. The architectural elements related to daylighting under investigation in this study were rooted in Iranian-Isfahani heritage, considered traditional Iranian architecture (from the 16th to early 20th century). The establishment of a classification system for daylighting systems holds significant utility. This...
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Extended Newmark method to assess stability of slope under bidirectional seismic loading
PublikacjaThe paper concerns the dynamic behavior of a simple slope model subjected to simultaneous horizontal and vertical excitations. The proposed method is based on Newmark’s sliding block concept, however, four new features are introduced. The most important assumption is that the normal component of dynamic excitations affects the resisting force both before and after the initiation of the relative slope motion, making it time-dependent....
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Inlet air fogging of marine gas turbine in power output loss compensation
PublikacjaThe use of inlet air fogging installation to boost the power for gas turbine engines is widely applied in the power generation sector. The application of fogging to mechanical drive is rarely considered in the literature [1]. This paper will cover some considerations relating to its application to gas turbines in ship drive. There is an important evaporative cooling potential throughout the world when the dynamic data is evaluated,...
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Solving highly-dimensional multi-objective optimization problems by means of genetic gender
PublikacjaPaper presents a computational optimization study using a genetic gender approach for solving multi-objective optimization problems of detection observers. In this methodology the information about an individual gender of all the considered solutions is applied for the purpose of making distinction between different groups of objectives. This information is drawn out of the fitness of individuals and applied during a current parental...
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Effect of underwater wet welding conditions on the diffusible hydrogen content in deposited metal
PublikacjaIn the study mercury displacement method was used for determination of diffusible hydrogen amount in deposited metal obtained during underwater wet welding with covered electrodes in laboratory conditions according to a two-level full factorial design for three factors. The factors and their levels were chosen among conditions and parameters of welding in accordance with the results of own preliminary studies. A statistical analysis...
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Solving highly-dimensional multi-objective optimization problems by means of genetic gender
PublikacjaPaper presents a computational optimization study using a genetic gender approach for solving multi-objective optimization problems of detection observers. In this methodology the information about an individual gender of all the considered solutions is applied for the purpose of making distinction between different groups of objectives. This information is drawn out of the fitness of individuals and applied during a current parental...
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Application of Barkhausen effect in the impact assessment of welding to internal stress distribution in steel
PublikacjaThe paper presents identification method of internal stresses in plane steel elements in the chase of deliverance and welding assembly. The assessment was made by means of a non-destructive experimental method based on measurements incorporating local external magnetic field and the measurement of induced voltage, including Barkhausen noise. This method allows a degradation assessment due to internal and external actions, causing...
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Application of Barkhausen effect in the impact assessment of welding to internal stress distribution in steel
PublikacjaThe paper presents identification method of internal stresses in plane steel elements in the chase of deliverance and welding assembly. The assessment was made by means of a non-destructive experimental method based on measurements incorporating local external magnetic field and the measurement of induced voltage, including Barkhausen noise. This method allows a degradation assessment due to internal and external actions, causing...
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THE EFFECT OF WET UNDERWATER WELDING ON COLD CRACKING SUSCEPTIBILITY OF DUPLEX STAINLESS STEEL
PublikacjaABSTRACT The present work was conducted to assess the weldability of duplex stainless steel in underwater conditions. Metal manual arc welding (MMA) with the use of coated electrodes was used in the investigations. Tekken weldability tests were performed underwater at 0.5 m depth and in the air. Nondestructive tests, metallographic examinations of welds, ferrite content assessment in microstructure and hardness test were performed....
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Experimental validation of the rolling resistance measurement method including updated draft standard
PublikacjaThe main objective of ROSANNE is the harmonisation and standardisation of the measurement of skid resistance, noise emission and rolling resistance of road pavements. Regarding rolling resistance characterisation, a draft for standardization of a harmonized procedure for classification of road surfaces across Europe has been prepared within WP3 (deliverable 3.5). The procedure deals with the direct measurement on real roads of...
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Stability and load bearing capacity of a braced truss under upward wind loading
PublikacjaThe paper is focused on the numerical and experimental investigation of stability of a steel truss under upward wind loading. The structure was stiffened by elastic braces situated at the top and bottom chord. Usually the lateral (translational) brace stiffness is considered. However, the rotational stiffness of braces caused by interaction between torsional stiffness of the truss top chord and bending stiffness of the roof elements...
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Stability and load bearing capacity of a braced truss under upward wind loading
PublikacjaThe paper is focused on the numerical and experimental investigation of stability of a steel truss under upward wind loading. The structure was stiffened by elastic braces situated at the top and bottom chord. Usually the lateral (translational) brace stiffness is considered. However, the rotational stiffness of braces caused by interaction between torsional stiffness of the truss top chord and bending stiffness of the roof elements...
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Multivariate evaluation by quality indicators of no-tillage system in Argiudolls of rolling pampa (Argentina)
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Finding safe and efficient shipping routes in ice-covered waters: A framework and a model
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The Effect of Welding Conditions on Mechanical Properties of Superduplex Stainless Steel Welded Joints
PublikacjaThe tests results of superduplex stainless steel welded joints made with a different heat input, using automatic submerged arc welding (SAW) and semi-automatic flux-cored arc welding (FCAW) have been presented. Metallographic examinations, the measurements of the ferrite content, the width of the heat affected zone (HAZ) and the hardness of the welds in characteristic areas have been performed. Significant differences in the amount of...
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Bead-on-plate welding on S235JR steel by underwater local dry chamber process
PublikacjaThe article presents the results of the effect of parameters of underwater local dry chamber welding on the properties of padding welds. The effect of heat input and the type of shielding gas on the structure and hardness of welds was established. the functions for estimating the maximum hardness of the heat affected zone have been also elaborated.
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Determining ATP concentration in Candida albicans in process of forming germ tube forms
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Transient torsional vibrations control in the geared drive trains of the hot rolling mills
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Experimental Study of the Rolling Friction Coefficient in Highly Loaded Supports of Rotary Kilns
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The new footbridge in city of Cracow dynamic design and final verification in test loading
PublikacjaArtykuł przedstawia rozwój projektu kładki od formy architektonicznej do ostatecznego kształtu konstrukcji.