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Search results for: RCA
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Mechanism of reaction of RNA-dependent RNA polymerase from SARS-CoV-2
PublicationWe combine molecular dynamics, statistical mechanics, and hybrid quantum mechanics/molecular mechanics simulations to describe mechanistically the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA-dependent RNA polymerase (RdRp). Our study analyzes the binding mode of both natural triphosphate substrates as well as remdesivir triphosphate (the active form of drug), which is bound preferentially over ATP by RdRp while...
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NASBA – IZOTERMICZNA AMPLIFIKACJA RNA
PublicationNASBA (ang. Nucleic Acid Sequence-Based Amplification) jest skuteczną i czułą techniką izotermicznej amplifikacji opartej na transkrypcji, służąca głównie do detekcji cząsteczek RNA. Znalazła ona zastosowanie do wykrywania RNA wirusowego, bakteryjnego i grzybiczego w próbkach klinicznych oraz żywości.
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Substituent effect in theoretical ROA spectra
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PCA based Fault Tolerant MPC
PublicationThis chapter presents a Fault Tolerant - Model Predictive Control (FT-MPC) schemes for sensor faults accommodation. A Fault Detection and Isolation (FDI) Unit, which is an integral part of FT-MPC system, is based on the Principal Component Analysis (PCA) method. Introduced approach enables efficient bias and drift faults accommodation in single, as well as simultaneous faults case. Simple simulation exercise is presented.Rozdział...
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The structure and role of mammalian sperm RNA: a review
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MultiRegional PCA for leakage detection and localisation in DWDS - approach
PublicationMonitoring is one of the most important parts in advanced control of complex dynamic systems. Information about systems behavior, including failures indicating, enables for efficient control. The chapter describes an approach to detection and localisation of pipe leakage in Drinking Water Distribution Systems (DWDS) representing complex and distributed dynamic system of large scale. Proposed MultiRegional Principal Component Analysis...
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DSC coupled with PCA as a tool for butter authenticity assessment
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SERRATE: a key factor in coordinated RNA processing in plants
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ECG-based prediction of ventricular fibrillation by means of the PCA
PublicationA Sudden Cardiac Death (SCD) is a death resulting from cardiac failure with no significant symptoms earlier than one hour before occurrence. It is the cause of for approximately 400000 deaths per year in United States and millions of deaths worldwide. The proposed system, including two-stage algorithm and wearable diagnostic device allows for SCD risk estimation and continuous monitoring of high risk patients. A single channel...
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Early Stages of RNA-Mediated Conversion of Human Prions
PublicationPrion diseases are characterized by the conversion of prion proteins from a PrPC fold into a disease-causing PrPSC form that is self-replicating. A possible agent to trigger this conversion is polyadenosine RNA, but both mechanism and pathways of the conversion are poorly understood. Using coarse-grained molecular dynamic simulations we study the time evolution of PrPC over 600 μs. We find that both the D178N mutation and interacting...
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α-Amino Acids In Water: A Review Of VCD And ROA Spectra
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Diagnostyka i identyfikacja procesu przy użyciu AdMS-PCA
PublicationArtykuł dotyczy diagnostyki i identyfikacji procesu przy użyciu adaptacyjnego, wieloskalowego rozszerzenia PCA - Adaptive Multiscale Principal Component Analysis (AdMS-PCA). Przeprowadzona została analiza własności AdMS-PCA istotnych dla diagnostyki i identyfikacji. Zauważono wadę części adaptacyjnej metody, która ogranicza jej praktyczne zastosowanie. Zaproponowano modyfikację poprzez wprowadzenie algorytmu nadzorującego adaptację....
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How to support patients with BRCA genetic mutation? Research review.
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The effects of RNA editing in cancer tissue at different stages in carcinogenesis
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EASY ACCESS TOOL FOR SMALL INTERFERING RNA (siRNA) DATA
PublicationFor many decades it was an accepted dogma of molecular genetics that the expression of genes is a “one-way-road” leading only in one direction from DNA to RNA to proteins. Recent discoveries in modern molecular genetics have challenged this dogma showing that specific RNA molecules play a central role in controlling the activity of genes by changing the structure of DNA sequences, targeting other RNAs for degradation or blocking...
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SiMiSnoRNA: Collection of siRNA, miRNA, and snoRNA database for RNA Interference
PublicationObjective:The discovery of sequence specific gene silencing which occurs due to the presence of double-stranded RNAs has considerable impact on biology, revealing an unknown level of regulation of gene expression. This process is known as RNA interference (RNAi) or RNA silencing in which RNA molecules inhibit gene expression, typically by causing the destruction of specific mRNA molecule. Two types of small RNA molecules - small...
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Platelet RNA Sequencing Data Through the Lens of Machine Learning
PublicationLiquid biopsies offer minimally invasive diagnosis and monitoring of cancer disease. This biosource is often analyzed using sequencing, which generates highly complex data that can be used using machine learning tools. Nevertheless, validating the clinical applications of such methods is challenging. It requires: (a) using data from many patients; (b) verifying potential bias concerning sample collection; and (c) adding interpretability...
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Leakage detection and localisation in drinking water distributionnetworks by MultiRegional PCA
PublicationMonitoring is one of the most important steps in advanced control of complex dynamic systems. Precise information about systems behaviour, including faults indicating, enables for efficient control. The paper describes an approach to detection and localisation of pipe leakage in Drinking Water Distribution Systems (DWDS) representing complex and distributed dynamic system of large scale. Proposed MultiRegional Principal Component...
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Novel Nuclear Functions of Arabidopsis ARGONAUTE1: Beyond RNA Interference
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Analysis of thoracic regional impedance changes using PCA approach
PublicationA multichannel impedance and one lead electrocardiographic recording system has been developed. The impedance measurement unit is built using a four-electrode technique. It consists of a sinusoidal, 40 kHz, current source and five measurement channels. Circumferential current electrodes have been located at a neck and an abdomen. Voltagemeasurement disk electrodes formed five two-electrode measurement ports. The impedance change...
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Detecting evoked potentials with SVD and ICA BASED statistical models
PublicationDokonano porównania rezultatów detekcji potencjałów wywołanych przy zastosowaniu metod statystycznych SVD i ICA. Jako dane wejściowe użyto dane wynikowe addytywnego modelu aktywności elektrycznej mózgu.
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Study on the role of podoplanin in papillary thyroid carcinoma using rna sequencing
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PCA application in assessment of fertilizer plant impact on different components of environment
PublicationW pracy podjęto próbę oceny wpływu Gdańskich Zakładów Nawozów Fosforowych "Fosfory" S.A. na najbliższe środowisko. W pracy przedstawiono wyniki świadczące o jakości różnych komponentów środowiska na terenie objętym wpływem zakładu. W pracy przedstawiono wyniki oznaczeń 44 pierwiastków w 46 próbkach gleb i traw pobieranych na terenie fabryki oraz w bezpośrednim sąsiedztwie. 37 z 44 oznaczonych pierwiastków użyto do wykonania analiz...
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Cross section calculations for electron scattering from DNA and RNA bases.
PublicationPoliczono różniczkowy i scałkowany przekrój czynny na rozproszenie sprężyste elektronów (w przybliżeniu atomów niezależnych) na uracylu, cytozynie, guaninie, adeninie i tyminie w zakresie energii od 50-4000 eV. W przybliżeniu modelu BEB policzono również przekroje czynne na jonizację tych molekuł.
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Application of PCA and time series analysis in studies of precipitation in Tricity (Poland).
PublicationPrzedstawiono wyniki monitoringu zanieczyszczenia atmosfery Trójmiasta. Próbki wody opadowej pobierano w cyklach miesięcznych przez 4 lata (1998-2001)w 10 punktach. Wyniki poddano statystycznej i chemometrycznej analizie (szeregi czasowe, analiza wariancji, analiza głównych składowych). Wykazano wpływ lokalizacji punktów monitoringowych i bliskości Morza Bałtyckiego na zawartość jonów nieorganicznych w analizowanych próbkach.
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Cross sections for electron scattering from selected components of DNA and RNA
PublicationWykorzystując metodę atomów niezależnych obliczono różniczkowe i całkowite przekroje czynne na sprężyste rozproszenie elektronów na wybranych drobinach, będących analogami składników DNA i RNA. Przekroje te obliczono w zakresie energii zderzenia od 50eV do 200 eV dla następujących drobin: C4H8O, C4H8O2, C5H10O2 oraz H3PO4. Przy użyciu metody BEB (binary-ecounter Bethe method) dla powyższych związków obliczono również przekroje...
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Analiza PCA sekwencji aktywnej termografii dynamicznej w diagnostyce oparzeń
PublicationCelem niniejszej pracy jest analiza metod przetwarzania obrazów opartych na analizie składowychgłównych oraz analizie składowych niezależnych, które pozwola na uzyskanie nowych informacji obadanym obiekcie. W ramach pracy powstało oprogramowanie, które pozwala na analizezarejestrowanych sekwencji termograficznych metoda składowych głównych - Principal ComponentAnalysis - PCA. Została przeprowadzona weryfikacja działania powyższych...
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Analiza PCA sekwencji aktywnej termografii dynamicznej w diagnostyce oparzeń
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Kernel PCA in Application to Leakage Detection in Drinking Water Distribution System
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Slope Stability Analysis of Zoned Earth Dam with RCC Overtopping Protection
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Analysis of the Environmental Impact of the Hull Construction of a Small Vessel Based on LCA
PublicationIn recent years, issues related to the impact of human activity on the natural environment have become pressing, and the challenge of global warming necessitates immediate action. To support environmental protection efforts, it has become imperative to adopt a broader perspective when evaluating various products and systems. A valuable tool for such assessments is a life cycle assessment (LCA), which enables a comprehensive analysis...
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The role of resilience in explaining hotel growth: A fuzzy-set QCA approach
PublicationPurpose: Due to the detrimental effects of the recent pandemic on the hotel sector, hotel resilience research and its impact on hotel recovery have received lots of academic attention. However, a sustainable perspective on hotel resilience, as an approach for investigating its impact on long-term hotel growth, has been largely overlooked in the hospitality resilience literature. Therefore, this paper aims to address the research...
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MultiRegional PCA for leakage detection and localisation in DWDS - Chojnice case study
PublicationThis chapter considers pipe leakage detection and localisation in Drinking Water Distribution Systems (DWDS) by using a novel approach the MultiRegional Principal Component Analysis (MR-PCA). The MR-PCA is an extension of well known PCA method. The main idea of MR-PCA consists in designing a number of regional PCA models and analysing their responses caused by the pipe faults. Moreover, DWDS is decomposed into suitable subnetworks...
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Kernel PCA in Application to Leakage Detection in Drinking Water Distribution System
PublicationMonitoring plays an important role in advanced control of complex dynamic systems. Precise information about system's behaviour, including faults detection, enables efficient control. Proposed method- Kernel Principal Component Analysis (KPCA), a representative of machine learning, skilfully takes full advantage of the well known PCA method and extends its application to nonlinear case. The paper explains the general idea of KPCA...
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Application of ANN and PCA to two-phase flow evaluation using radioisotopes
PublicationIn the two-phase flow measurements a method involving the absorption of gamma radiation can be applied among others. Analysis of the signals from the scintillation probes can be used to determine the number of flow parameters and to recognize flow structure. Three types of flow regimes as plug, bubble, and transitional plug – bubble flows were considered in this work. The article shows how features of the signals in the time and...
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Morphometric evaluation of the delayed cerebral arteries response to acetazolamide test in patients with chronic carotid artery stenosis using computed tomography angiography
PublicationBackground: The evidence accumulates that the response to acetazolamide test is delayed on the ipsilateral side to stenosis. However, the effect of acetazolamide beyond 30 minutes after acetazolamide administration remains unknown. The aim of this study was to assess the diameters of: anterior cerebral arteries (ACAs), middle cerebral arteries (MCAs) and posterior cerebral arteries (PCAs) before and 60 minutes after the acetazolamide...
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Application of RCD and AFDD in low-voltage electrical installations for protection against fire
PublicationThe paper presents the principles of application of residual current devices (RCDs) in protection against fire. The permissible rated residual operating current of RCDs is discussed. Limitations in the operation of RCDs in this type of protection are indicated. A new type of a protective device against fire – arc fault detection device (AFDD) – is described.
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Bayesian multilevel model of micro RNA levels in ovarian-cancer and healthy subjects
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Comparative studies of the Acinetobacter genus and the species identification method based on the recA sequences
PublicationZaproponowano metodę genotypowania bakterii rodzaju Acinetobacter, opartą o analizę sekwencji genów recA, amplifikację fragmentów genu recA i analizę profili fragmentów restrykcyjnych po cięciu produktów reakcji PCR enzymami restrykcyjnymi (recA PCR/RFLP). Profile RFLP otrzymane za pomocą enzymu Tsp509I są użyteczne w identyfikacji poszczególnych gatunków bakterii rodzaju Acinetobacter. Na podstawie analizy otrzymanych sekwencji...
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Supervised-learning-based development of multi-bit RCS-reduced coding metasurfaces
PublicationCoding metasurfaces have been introduced as efficient tools allowing meticulous control over the electromagnetic (EM) scattering. One of their relevant application areas is radar cross section (RCS) reduction, which principally relies on the diffusion of impinging EM waves. Despite its significance, careful control of the scattering properties poses a serious challenge at the level of practical realization. This article is concerned...
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A Data Driven Model for Predicting RNA-Protein Interactions based on Gradient Boosting Machine
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Assessment of the Environmental Impact of a Car Tire throughout Its Lifecycle Using the LCA Method
PublicationThere are numerous threats to the natural environment that pose a significant risk both to the environment and to human health, including car tires. Thus, there is a need to determine the impact of the life cycle of car tires on the environment, starting with the processes of raw materials acquisition, production, and ending with end-of-life management. Therefore, the authors of this study chose to do research on passenger car...
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Effect of unlabeled helper probes on detection of an RNA target by bead-based sandwich hybridization
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Identyfikacja i diagnostyka procesu oczyszczania ścieków przy użyciu metody MS-PCA
PublicationPołączenie algorytmu PCA z dekompozycją falkową pozwala na wiarygodną identyfikację i diagnostykę procesu z wieloma skalami czasu. Niniejszy artykuł pokazuje jak przy pomocy wspomianego narzedzia określić stan pracy obiektu oraz odpowiednio szybko wykryć uszkodzenia (np. czujników pomiarowych) lub stany awaryjne obiektu jakim jest oczyszczalnia ścieków. Przedstawiony jest przykład detekcji błędów pomiarowych (stężenie tlenu w komorze...
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RecA Proteins from Deinococcus geothermalis and Deinococcus murrayi - Cloning, Purification and Biochemical Characterisation
PublicationEscherichia coli RecA plays a crucial role in recombinational processes, the induction of SOS response and mutagenic lesion bypasses. It has also been demonstrated that RecA protein is indispensable when it comes to the reassembly of shattered chromosomes in gamma-irradiated Deinococcus radiodurans, one of the most radiation-resistant organisms known. Moreover, some functional differences between E. coli and D. radiodurans RecA...
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Design of High-Performance Scattering Metasurfaces through Optimization-Based Explicit RCS Reduction
PublicationThe recent advances in the development of coding metasurfaces created new opportunities in realization of radar cross section (RCS) reduction. Metasurfaces, composed of optimized geometries of meta-atoms arranged as periodic lattices, are devised to obtain desired electromagnetic (EM) scattering characteristics. Despite potential benefits, their rigorous design methodologies are still lacking, especially in the context of controlling...
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A Data Driven Model for Predicting RNA-Protein Interactions based on Gradient Boosting Machine
PublicationRNA protein interactions (RPI) play a pivotal role in the regulation of various biological processes. Experimental validation of RPI has been time-consuming, paving the way for computational prediction methods. The major limiting factor of these methods has been the accuracy and confidence of the predictions, and our in-house experiments show that they fail to accurately predict RPI involving short RNA sequences such as TERRA RNA....
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Resolving the role of podoplanin in the motility of papillary thyroid carcinoma-derived cells using RNA sequencing
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The Escherichia coli RNA polymerase alpha subunit and transcriptional activation by bacteriophage lambda CII protein.
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The Risk Indicators of Construction Projects’ Cost Overruns Assessed with PCA, Decision Trees, and Pearson’s Correlations
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