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Search results for: domain ontology
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Notch signalling pathway as an oncogenic factor involved in cancer development
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Psychological adjustment of women after oncological surgery and at the end of treatment
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The role of Snail1 transcription factor in colorectal cancer progression and metastasis
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Application of PL-Grid Platform for Modeling of the Selected Acoustic Phenomena
PublicationDomain grids are specific computational environments, developed within the PLGrid Plus project. For the Acoustic domain grid two supercomputer grid based services were prepared. Dedicated software consists of the outdoor sound propagation module and psychoacoustical noise dosimeter. The results are presented in a form of maps of sound level and Temporary Threshold Shift (TTS) values, therefore the services may play an informative...
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Some results on a trading model in a consensus list coloring
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Performance-driven yield optimization of high-frequency structures by kriging surrogates
PublicationUncertainty quantification is an important aspect of engineering design, as manufacturing toler-ances may affect the characteristics of the structure. Therefore, quantification of these effects is in-dispensable for adequate assessment of the design quality. Toward this end, statistical analysis is performed, for reliability reasons, using full-wave electromagnetic (EM) simulations. Still, the computational expenditures associated...
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Examining Classifiers Applied to Static Hand Gesture Recognition in Novel Sound Mixing System
PublicationThe main objective of the chapter is to present the methodology and results of examining various classifiers (Nearest Neighbor-like algorithm with non-nested generalization (NNge), Naive Bayes, C4.5 (J48), Random Tree, Random Forests, Artificial Neural Networks (Multilayer Perceptron), Support Vector Machine (SVM) used for static gesture recognition. A problem of effective gesture recognition is outlined in the context of the system...
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The Impact of Lexicon Adaptation on the Emotion Mining From Software Engineering Artifacts
PublicationSentiment analysis and emotion mining techniques are increasingly being used in the field of software engineering. However, the experiments conducted so far have not yielded high accuracy results. Researchers indicate a lack of adaptation of the methods of emotion mining to the specific context of the domain as the main cause of this situation. The article describes research aimed at examining whether the adaptation of the lexicon...
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An Analysis of Contextual Aspects of Conceptualization: A Case Study and Prospects
PublicationIn this chapter we present a new approach to development of modularized knowledge bases. We argue that modularization should start from the very beginning of modeling, i.e. from the conceptualization stage. To make this feasible, we propose to exploit a context-oriented, semantic approach to modularization. This approach is based on the Structural Interpretation Model (SIM) presented earlier elsewhere. In the first part of thischapter...
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Semantic modeling of contextual augmented reality environments
PublicationDespite significant progress in the field of augmented reality (AR), regarding both hardware and software, there is still a lack of universal models and methods that would enable building ubiquitous AR systems that could be used anywhere and anytime, covering different application areas. This dissertation describes a new approach to building AR systems, called the Contextual Augmented Reality Environment (CARE). The CARE approach...
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Bearing estimation using double frequency reassignment for a linear passive array
PublicationThe paper demonstrates the use of frequency reassignment for bearing estimation. For this task, signals derived from a linear equispaced passive array are used. The presented method makes use of Fourier transformation based spatial spectrum estimation. It is further developed through the application of two-dimensional reassignment, which leads to obtaining highly concentrated energy distributions in the joint frequency-angle domain...
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Role of nitrogen in evolution of sp2/sp3 bonding and optical band gap in hydrogenated carbon nitride
PublicationDrastic changes in the bonding are found in amorphous hydrogenated carbon nitride (a-CNx:H) film as a function of nitrogen concentration (or N/C ratio). The total C-sp3 fraction and hardness shows a sharp decrease (at N/C = 0.40) whereas optical band gap and resistivity shows a gradual increase as nitrogen concentration increases from 0.07 to 0.58. Raman spectrum of a-CNx:H film is fitted with both Gaussian (integrated intensity...
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Simulation Environment in Python for Ship Encounter Situations
PublicationTo assess the risk of collision in radar navigation distance-based safety measures such as Distance at the Closest Point of Approach and Time to the Closest Point of Approach are most commonly used. Also Bow Crossing Range and Bow Crossing Time measures are good complement to the picture of the meeting situation. When ship safety domain is considered then Degree of Domain Violation and Time to Domain Violation can be applied. This...
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Improving listeners' experience for movie playback through enhancing dialogue clarity in soundtracks
PublicationThis paper presents a method for improving users' quality of experience through processing of movie soundtracks. The dialogue clarity enhancement algorithms were introduced for detecting dialogue in movie soundtrack mixes and then for amplifying the dialogue components. The front channel signals (left, right, center) are analyzed in the frequency domain. The selected partials in the center channel signal, which yield high disparity...
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Hybrid Technique Combining the FDTD Method and Its Convolution Formulation Based on the Discrete Green's Function
PublicationIn this letter, a technique combining the finite-difference time-domain (FDTD) method and its formulation based on the discrete Green's function (DGF) is presented. The hybrid method is applicable to inhomogeneous dielectric structures that are mutually coupled with wire antennas. The method employs the surface equivalence theorem in the discrete domain to separate the problem into a dielectric domain simulated using the FDTD method...
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Bioaugmentation of a sequencing batch reactor with Archaea for the treatment of reject water
PublicationIn this study, the bioaugmentation of a sequencing batch reactor (SBR) for the treatment of reject water from wastewater treatment plant was evaluated. For the bioaugmentation step a product containing an enrichment of microorganisms from the Archaea domain was used to enhance the performance of the reactor for treating reject water. The experiment was carried out in two parallel lab-scale sequencing batch reactors. The first one...
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Comparative Study of Integer and Non-Integer Order Models of Synchronous Generator
PublicationThis article presents a comparison between integer and non-integer order modelling of a synchronous generator, in the frequency domain as well as in the time domain. The classical integer order model was compared to one containing half -order systems. The half-order systems are represented in a Park d-q axis equivalent circuit as impedances modelled by half-order transmittances. Using a direct method based on the approximation...
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Managing data from heterogeneous data sources using knowledge layer
PublicationW procesie integrowania danych przy użyciu ontologii, ważne jest aby zarządzać danymi przechowywanymi w zewnętrznych źródłach, analogicznie jak tymi przechowywanymi w Bazie Wiedzy. Zaprezentowana w poprzednich pracach metoda kartograficznej reprezentacji wiedzy pozwala na wnioskowanie z danych przechowywanych w Bazie wiedzy. Rozwiązanie zaprezentowane w tej pracy umożliwia wykorzystanie metody kartograficznej do wnioskowania z...
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Algorithms for query processing in a distributed knowledge integration system
PublicationGłównym celem artykułu jest wprowadzenie modelu systemu integracji wiedzy. Przedstawiony model jest oparty na modelu Calvanese i rozszerza go o wielowarstwowy model integracji. W artykule pokazano również użycie Kartograficznej Reprezentacji Wiedzy do przechowywania i przetwarzania ontologii w źródłach wiedzy oraz do budowania odwzorowań pomiędzy ontologiami. Odwzorowania pomiędzy ontologiami budowane w oparciu o odwzorowywanie...
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Metody wnioskowania kontekstowego z danych zapisanych w zewnętrznych źródłach
PublicationW poprzednich pracach autorów został przedstawiony system wnioskowania z danych zapisanych w zewnętrznych źródłach - KL (Knowledge Layer). Metody SED (Semantic Enrichment of Data) i RED (Reasoning over External Data) zastosowane w tym systemie umożliwiają wzbogacenie danych o semantykę oraz wnioskowanie z tych danych analogicznie jak z ontologicznego opisu świata. Dane zapisane w źródłach zewnętrznych są wzbogacone o terminologię...
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The pH Value as a Factor Modifying Bacterial Colonization of Sinonasal Mucosa in Healthy Persons
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Determination of the Vehicles Speed Using Acoustic Vector Sensor
PublicationThe method for determining the speed of vehicles using acoustic vector sensor and sound intensity measurement technique was presented in the paper. First, the theoretical basis of the proposed method was explained. Next, the details of the developed algorithm of sound intensity processing both in time domain and in frequency domain were described. Optimization process of the method was also presented. Finally, the proposed measurement...
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Experience Based Clinical Decision Support Systems: An Overview and Case Studies
PublicationThis chapter briefly overviews the evolution of the application of the Decisional DNA and the Set of Experience Knowledge Structure (SOEKS) in the medical domain and in particular in the specific case of the experience-based decision support systems. Decisional DNA, as a knowledge representation structure, offers great possibilities on gathering explicit knowledge of formal decision events as well as a tool for decision making...
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Magnetization reversal process in flat and patterned exchange-biased CoO/[Co/Pd] thin films
PublicationNanostructured magnetic materials have gained great interest due to their possible technological applications in electronic and spintronic devices or in medicine as drug carriers. The key issue which decides on their potential industrial utilization is an exhibited type of a magnetization reversal process. Two main approaches used to describe the switching mechanism are the domain wall motion and coherent magnetization rotation,...
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Conservation and diversity of MutS proteins
PublicationThe homologues of MutS, mismatch repair protein, exist in all prokaryotes, with the exception of Actinobacteria, Mollicutes and part of the Archaea. Multiple alignments of 316 MutS amino acid sequences from 169 species revealed conserved residues and sequence motifs distinguishing MutS homologues. All MutS homologues show high conservation within the ATPase domain. MutS1, the homologue responsible for DNA mismatch recognition,...
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Klimat i oceanografia przełomu jury i kredy zachodniej Tetydy
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Areas of Updraft Air Motion in an Idealised Weather Research and Forecasting Model Simulation of Atmospheric Boundary Layer Response to Different Floe Size Distributions
PublicationPresented dataset is part of a numerical modelling study focusing on the analysis of the influence of sea ice floe size distribution (FSD) on the horizontal and vertical structure of convection in the atmosphere. The total area and spatial arrangement of the up-drafts indicates that the FSD affects the total moisture content and the values of area averaged turbulent fluxes in the model domain. In fact, while convective updrafts...
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A New Expression for the 3-D Dyadic FDTD-Compatible Green's Function Based on Multidimensional Z-Transform
PublicationIn this letter, a new analytic expression for the time-domain discrete Green's function (DGF) is derived for the 3-D finite-difference time-domain (FDTD) grid. The derivation employs the multidimensional Z-transform and the impulse response of the discretized scalar wave equation (i.e., scalar DGF). The derived DGF expression involves elementary functions only and requires the implementation of a single function in the multiple-precision...
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Creating Acoustic Maps Employing Supercomputing Cluster
PublicationThe implemented online urban noise pollution monitoring system is presented with regard to its conceptual assumptions and technical realization. A concept of the noise source parameters dynamic assessment is introduced. The idea of noise modeling, based on noise emission characteristics and emission simulations, was developer and practically utilized in the system. Furthermore, the working system architecture and the data acquisition...
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SPECTRAL-BASED MODAL PARAMETERS IDENTIFICATION WITH MULTIPLE PARTICLE SWARMS OPTIMIZATION
PublicationThe paper presents usage of a Particle Swarm Optimization [1] based algorithm for spectral-based modal parameters identification. The main algorithm consists of two groups of swarms, namely, scouts and helpers. For the first group additional penalizing process is provided to force separation of scouting swarms in frequency space. The swarms have an ability to communicate with each other. At first stage, each swarm focuses on a...
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Diagnostics of pillars in St. Mary’s Church (Gdańsk, Poland) using the GPR method
PublicationThe main goal of this study was non-destructive evaluation of pillars in the St. Mary’s Church (Gdańsk, Poland) using the ground penetrating radar (GPR) technique. The GPR inspection was conducted on four brick masonry pillars and five pillars strengthened by reinforced concrete jacketing. Data were acquired with a 2 GHz antenna along longitudinal and transverse profiles. The study involved the estimation of the electromagnetic...
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Parallel Implementation of the Discrete Green's Function Formulation of the FDTD Method on a Multicore Central Processing Unit
PublicationParallel implementation of the discrete Green's function formulation of the finite-difference time-domain (DGF-FDTD) method was developed on a multicore central processing unit. DGF-FDTD avoids computations of the electromagnetic field in free-space cells and does not require domain termination by absorbing boundary conditions. Computed DGF-FDTD solutions are compatible with the FDTD grid enabling the perfect hybridization of FDTD...
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Enhanced uniform data sampling for constrained data‐driven modeling of antenna input characteristics
PublicationData-driven surrogates are the most popular replacement models utilized in many fields of engineering and science, including design of microwave and antenna structures. The primary practical issue is a curse of dimensionality which limits the number of independent parameters that can be accounted for in the modelling process. Recently, a performance-driven modelling technique has been proposed where the constrained domain of the...
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Ontological queries supporting decision process in KaSea system
PublicationWraz z rozwojem baz wiedzy pojawiły się systemy ekspertowe, które wykorzystują je do wsparcia procesu podejmowania decyzji. Systemy Wsparcia Decyzyjnego (SWD), które są tematem niniejszego artykułu, komunikują się z bazami wiedzy, wypełniając je znanymi faktami i odczytując nowo wywnioskowane informacje. Jednakże istnieją sytuacje, w których SWD otrzymują niejednoznaczną odpowiedź od bazy wiedzy. Wówczas pojawia się potrzeba określenia,...
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Ontological queries supporting decision process in KaSea system
PublicationWraz z rozwojem baz wiedzy pojawiły się systemy ekspertowe, które wykorzystują je do wsparcia procesu podejmowania decyzji. Systemy Wsparcia Decyzyjnego (SWD), które są tematem niniejszego artykułu, komunikują się z bazami wiedzy, wypełniając je znanymi faktami i odczytując nowo wywnioskowane informacje. Jednakże istnieją sytuacje, w których SWD otrzymują niejednoznaczną odpowiedź od bazy wiedzy. Wówczas pojawia się potrzeba określenia,...
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Dane, informacje i wiedza w Semantic Web
PublicationW rozdziale podjęto próbę usystematyzowania pozornie dobrze znanych pojęć informatycznych, takich jak dane, informacja i wiedza, w kontekście burzliwego rozwoju zasobów informacyjnych ludzkości spowodowanego powstaniem i gwałtownym rozwojem sieci WWW. Zaprezentowane podejście opiera się na ustabilizowanym dorobku informatyki w zakresie baz danych oraz na rozwijającym się dynamicznie dorobku w zakresie ontologii i baz wiedzy. Te...
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Wytwarzanie architektury korporacyjnej środowiskiem weryfikacji struktur baz wiedzy systemu wieloagentowego
PublicationRozdział dokumentuje przebieg i wyniki weryfikacji opracowywanego w Zakładzie Zarządzania Technologiami Informatycznymi modelu systemu wieloagentowego do oceny technologii informatycznych. Wykorzystanie tego modelu (zaprojektowanego w oparciu o ontologie i zasoby baz wiedzy) ma docelowo wspomagać procesy decyzyjne z zakresu doboru technologii informatycznych dla danej organizacji. Dla potrzeb weryfikacji rozwiązania w zakresie...
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Wpływ teorii chaosu na niektóre tradycyjne stanowiska ontologiczne oraz na spór o redukcjonizm
PublicationTeoria chaosu stanowi nie tylko nowy paradygmat w nauce, ale także inspirację do badań filozoficznych nad rzeczywistością. W artykule podjęto próbę zarysowania głównych założeń teorii chaosu oraz określenia jej wpływu na niektóre tradycyjne stanowiska ontologiczne oraz spór o redukcjonizm. Z punktu widzenia ontologii, w dynamice nieliniowej szczególnie interesujący jest powrót do ciągłościowego monoizmu w opozycji do atomizmu....
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Wykorzystanie portalu ontologicznego w zastosowaniach mikroekonomicznych
PublicationPrzedstawiono problematykę dzidzinowo zorientowanych ontologii w informatycznych zastosowaniach praktycznych. Wprowadzono podstawy podejścia ontologicznego, jako alternatywnego ujęcia dla opisu oraz dynamicznego przechowywania okreslonych reprezentacji wiedzy. Pokazano dziedzinową problematykę zagadnień mikroekonomicznych oraz zwrócono uwagę na potencjalne mozliwości zastosowania podejścia ontologicznego w tym zakresie. Przeanalizowano...
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Diagnostic Accuracy of Liquid Biopsy in Endometrial Cancer
PublicationBackground: Liquid biopsy is a minimally invasive collection of a patient body fluid sample. In oncology, they offer several advantages compared to traditional tissue biopsies. However, the potential of this method in endometrial cancer (EC) remains poorly explored. We studied the utility of tumor educated platelets (TEPs) and circulating tumor DNA (ctDNA) for preoperative EC diagnosis, including histology determination. Methods:...
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Surgical Site Infection after Breast Surgery: A Retrospective Analysis of 5-Year Postoperative Data from a Single Center in Poland
PublicationBackground and Objectives: Surgical site infection (SSI) is a significant complication of non-reconstructive and reconstructive breast surgery. This study aimed to assess SSI after breast surgery over five years in a single center in Poland. The microorganisms responsible for SSI and their antibiotic susceptibilities were determined. Materials and Methods: Data from 2129 patients acquired over five years postoperatively by the...
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GPR simulations for diagnostics of a reinforced concrete beam
PublicationThe most popular technique for modelling of an electromagnetic field, the finite difference time domain (FDTD) method, has recently become a popular technique as an interpretation tool for ground penetrating radar (GPR) measurements. The aim of this study is to detect the size and the position of damage in a reinforced concrete beam using GPR maps. Numerical simulations were carried out using the finite differ-ence time domain...
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Usage of concentrated spectrogram for analysis of acoustical signals
PublicationA novel precise method of signal analysis in the time-frequency domain is presented. A signal energy distribution is estimated by discard and displacement of energy parts of the classical spectrogram. A channelized instantaneous frequency and a local group delay are used in order to energy replacement. Additionally, newly introduced representations such as: a channelized instantaneous bandwidth and a local group duration are used...
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Retro analog concept: comparative study on physico-chemical and biological properties of selected antimicrobial peptides
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Non-Visual Aspects of the Space Performing the Soundscape of the City
PublicationThe relationship between art and architecture remains a challenging issue today, first and foremost in the domain of architecture, and particularly in art and design schools. To address this issue, the Winter School International Research and Education (WIRE) programme was run in the Gazi University Department of Architecture between 2013 and 2014, with the main theme being “Art and Architecture”, and the sub-themes determined...
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Evaluation Of Single Pole Auto-Reclosing Effectiveness With Nonlinear Secondary Arc Model
PublicationThe paper discusses two evaluation methods of single pole auto-reclosing process effectiveness in HV transmission lines. Secondary arc current and recovery voltage results obtained by load flow calculation are compared to the results obtained by the time domain simulations. Moreover, a non-linear secondary arc implementation is presented. The authors indicate, that precise representation of secondary electric arc leads to more...
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Billiard in a rotating half-plane
PublicationThe main objective of this research is to study the properties of a billiard system in an unbounded domain with moving boundary. We consider a system consisting of an infinite rod (a straight line) and a ball (a massless point) on the plane. The rod rotates uniformly around one of its points and experiences elastic collisions with the ball. We define a mathematical model for the dynamics of such a system and write down asymptotic...
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UNRES-GPU for Physics-Based Coarse-Grained Simulations of Protein Systems at Biological Time- and Size-Scales
PublicationThe dynamics of the virus like particles (VLPs) corresponding to the GII.4 Houston, GII.2 SMV, and GI.1 Norwalk strains of human noroviruses (HuNoV) that cause gastroenteritis was investigated by means of long-time (about 30 μs in the laboratory timescale) molecular dynamics simulations with the coarse-grained UNRES force field. The main motion of VLP units turned out to be the bending at the junction between the P1 subdomain (that...
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Long‐time scale simulations of virus‐like particles from three human‐norovirus strains
PublicationThe dynamics of the virus like particles (VLPs) corresponding to the GII.4 Houston, GII.2 SMV, and GI.1 Norwalk strains of human noroviruses (HuNoV) that cause gastroenteritis was investigated by means of long-time (about 30 μs in the laboratory timescale) molecular dynamics simulations with the coarse-grained UNRES force field. The main motion of VLP units turned out to be the bending at the junction between the P1 subdomain (that...
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Application of algorithms for reasoning from imperfect knowledge in it evaluation environment
PublicationThe paper describes concept of building multi-agent system dedicated for information technology evaluation or selection for IT enterprises management (IT_MAS). Authors present the model of Knowledge Processing Environment, which is one of main components of the solution. Either facts or rules will be based on IT specialists' experience. However, knowledge which is being acquisited from IT domain is mostly imperfect - uncertain...