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Search results for: DSB PROTEINS
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Teaching Adaptive Control with DS1102 DSP Controller Board
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Wiarygodna integracja systemów ESB oraz Web services
PublicationW pracy przedstawiono problem wiarygodnej integracji aplikacji rozproszonych z wykorzystaniem technologii Enterprise Service Bus oraz Web services. Przeprowadzono badania trzech platform integracji serwisów: Sun Open ESB, Windows Workflow Foundation oraz Mule ESB wraz z najbardziej popularnymi serwerami Web services. Badania wykazały, że delkarowane i zaimplementowane możliwości współpracy w platformach integracji różnią się w...
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TG and DSC studies of bone tissue: Effects of osteoporosis
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Study Analysis of Transmission Efficiency in DAB+ Broadcasting System
PublicationDAB+ is a very innovative and universal multimedia broadcasting system. Thanks to its updated multimedia technologies and metadata options, digital radio keeps pace with changing consumer expectations and the impact of media convergence. Broadcasting analog and digital radio services does vary, concerning devices on both transmitting and receiving side, as well as content processing mechanisms. However, the biggest difference is...
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Subjective and Objective Comparative Study of DAB+ Broadcast System
PublicationBroadcasting services seek to optimize their use of bandwidth in order to maximize user’s quality of experience. They aim to transmit high-quality digital speech and music signals at the lowest bitrate. They intend to offer the best quality under available conditions. Due to bandwidth limitations, audio quality is in conflict with the number of transmitted radio programs. This paper analyzes whether the quality of real-time digital...
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Mikroprocesorowy system sterowania sensorami z inerfejsem USB
PublicationZapotrzebowanie na detekcję gazów oraz zapachów wymaga konstruowania tanich urządzeń o coraz lepszej selektywności i czułości pomiarów. W pracy opisano taki układ pomiarowy, w którym zwiększenie selektywności oraz czułości uzyskano przez pomiar zjawisk fluktuacyjnych w rezystancyjnym czujniku gazów. Opisano sposób pomiaru, wybrany układ pomiarowy oraz projekt i realizację systemu mikroprocesorowego sterującego układem. W zakończeniu...
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REALIZACJA USŁUGI DSR NA PRZYKŁADZIE DOMÓW JEDNORODZINNYCH
PublicationW artykule przedstawiono ideę usługi DSR, czyli reakcji strony popytowej, dla odbiorców rozproszonych. Polega ona na zmniejszeniu zapotrzebowania na energię elektryczną lub przesunięcia go w czasie. Wdrożenie usługi może w znaczny sposób wpłynąć na pracę systemu elektroenergetycznego – usługa DSR może wspomóc bilansowanie systemu elektroenergetycznego, a także pozytywnie oddziaływać na jego elastyczność, wydajność oraz stabilność....
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Measurement system based on USB Z-Wave controller
PublicationA wireless measurement system based on the Z-Wave standard is presented in this paper. The system is composed of a U SB Z-Stick Gen5 controller connected to a Personal Computer and a Fibaro controller FGRGBWM-441. Operation of the system is controlled by software written in C++ using OpenZWave library. Some metrological aspects of the system are evaluated: accuracy, linearity, resolution and frequency of voltage measurements.
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Zastosowanie magistrali USB w mikroprocesorowych urządzeniach automatyki.
PublicationW artykule przedstawiono właściwości magistrali USB oraz oceniono możliwość zastosowania jej w urządzeniach automatyki. Wnioski wyprowadzono w oparciu o doświadczenia związane z uruchomieniem prostego układu pomiarowego wykorzystującego popularny mikrokontroler z rodziny 8051 i scalony sterownik magistrali USB - FTU245AM.
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Determination of denaturation temperature of connective tissue proteins by viscometric measurements.
Open Research DataViscometric denaturation temperature of connective tissue proteins was determined by measuring viscosity with a Brookfield viscometer, using a LV SC4 - 18, 25 or LV3 spindle and shear rates from 50 to 110 s-1 (Fig.1). Freeze-dried protein samples were dissolved in 0.5 M acetic acid at 4 °C and concentration of 20 mg/mL. The solution was stirred with...
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Effect of buckwheat flour on microelements and proteins contents in gluten-free bread
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Porcine myofibrillar proteins as potential precursors of bioactive peptides – an in silico study
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Analysis of differences in the stability of proteins encoded in mitochondrial DNA of model organisms
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Generalization of the Elastic Network Model for the Study of Large Conformational Changes in Proteins
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The Extracellular Bacterial HtrA Proteins as Potential Therapeutic Targets and Vaccine Candidates
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Evolution of physics-based methodology for exploring the conformational energy landscape of proteins
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Characterization of single-stranded DNA-binding proteins from the psychrophilic bacteria
PublicationSingle-stranded DNA-binding proteins (SSBs) are indispensable elements in the cells of all living organisms. SSB proteins interact with ssDNA insequence in an independent manner, preventing them from forming secondary structures and from degradation by nucleases. In this way, SSB-binding proteins participate in all processes involving ssDNA, such as replication, repair and recombination. Although there are differences in amino...
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Characterization of single-stranded DNA-binding proteins from the psychrophilic bacteria
PublicationSingle-stranded DNA-binding proteins (SSBs) are indispensable elements in the cells of all living organisms. SSB proteins interact with ssDNAinsequence in an independent manner, preventing them from forming secondary structures and from degradation by nucleases. In this way, SSB-binding proteins participate in all processes involving ssDNA, such as replication, repair and recombination.Although there are differences in amino acid...
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Coarse-grained simulation - an efficient approach for studying motions of large proteins
PublicationOne of the most important challenges in performing Molecular Dynamics (MD) simulations of large protein complexes is to accommodate the model accuracy and the simulation timescale. Hitherto, for the most relevant dynamics of protein aggregates in an explicit aqueous environment, the timescale reachable for the all-atoms simulations is of hundreds of nanoseconds. This range is four to six orders of magnitude smaller than processes...
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Partial characterization of proteins from mussel Mytilus galloprovincialis as a biomarker of contamination
PublicationPrzedmiotem zainteresowania były:- funkcjonalne i przeciwutleniające właściwości białek małża Mytilus galloprovincialis,- poziom zawartości metali ciężkich (ołów i kadm) w tkankach.Badania przeprowadzono dla małży zebranych zarówno w zanieczyszczonych, jak i w czystych obszarach strefy brzegowej Morza Czarnego w regionie Warny (Bułgaria). W badaniach wykorzystano takie techniki analityczne jak: spektroskopia FTIR, fluorescencja,...
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Novel primosomal protein B from Clostridium pastuerianum
PublicationPriB is a primosomal protein that catalyzes DNA replication in Procaryota. The replication pathway starts with PriA protein - the initiator protein that binds to a DNA replication fork, unwinds double-stranded DNA and role of PriB is to stabilize PriA on the DNA. However there are many biochemical differences in replication mechanism in bacteria and only some of them use PriB proteins. A few of PriB proteins were published and...
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Novel primosomal protein B from Clostridium pasteurianum
PublicationPriB is a primosomal protein that catalyzes DNA replication in Procaryota. The replication pathway starts with PriA protein - the initiator protein that binds to a DNA replication fork, unwinds double-stranded DNA and role of PriB is to stabilize PriA on the DNA. However there are many biochemical differences in replication mechanism in bacteria and only some of them use PriB proteins. A few of PriB proteins were published and...
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Pea Protein for Hempseed Oil Nanoemulsion Stabilization
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Polysaccharide–Protein Complexes in a Coarse-Grained Model
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Some applications of thermophiles and their enzymes for protein processing
PublicationPrzedstawiono charakterystykę, właściwości oraz możliwości zastosowań enzymów proteolitycznych wytwarzanych przez termofile. Zaletą tych biokatalizatorów jest między innymi duża odporność na działanie rozpuszczalników organicznych, detergentów i innych czynników denaturujących białka oraz mała wrażliwość na zmiany pH. Dokonano też przeglądu czynników powodujących dużą stabilność proteaz z termofili.
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Apple pectin complexes with whey protein isolate
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The investigation of the effects of counterions in protein dynamics simulations
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Taurine as a water structure breaker and protein stabilizer
PublicationThe enhancing effect on the water structure has been confirmed for most of the osmolytes exhibiting both stabilizing and destabilizing properties in regard to proteins. The presented work concerns osmolytes, which should be classified as “structure breaking” solutes: taurine and N,N,N-trimethyltaurine (TMT). Here, we combine FTIR spectroscopy, DSC calorimetry and DFT calculations to gain an insight into the interactions between...
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ANALYSIS OF THE p53 PROTEIN GENE EXPRESSION MODEL
PublicationWe study the asymptotic behaviour of the solutions of the p53-Mdm2 model proposed by Monk (2003). The p53 gene is crucial for cellular inhibition of the angiogenesis process, while Mdm2 is a negative regulator of the p53 tumor-suppressor. We investigate the stability of the positive steady state and perform some numerical experiments.
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Protein thermal stabilization in aqueous solutions of osmolytes
PublicationProteins’ thermal stabilization is a significant problem in various biomedical, biotechnological, and technological applications. We investigated thermal stability of hen egg white lysozyme in aqueous solutions of the following stabilizing osmolytes: Glycine (GLY), N-methylglycine (NMG), N,N-dimethylglycine (DMG), N,N,N-trimethylglycine (TMG), and trimethyl-N-oxide (TMAO). Results of CD-UV spectroscopic investigation were compared...
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Modelling gene expression of a self-regulating protein
PublicationWe analyze a model of gene transcription and protein synthesis. We take into account the number of sites on the protein’s promoter at which the protein’s dimers can bind blocking transcription of protein mRNA.
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BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS
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Identification and characterization of single-stranded DNA-binding protein from the facultative psychrophilic bacteria Pseudoalteromonas haloplanktis
PublicationSingle-stranded DNA-binding protein (SSB) plays an important role in DNA metabolism such as DNAreplication, repair, and recombination, and is essential for cell survival. This study reports on the ssb-likegene cloning, gene expression and characterization of a single-stranded DNA-binding protein of Pseudoal-teromonas haloplanktis (PhaSSB) and is the first report of such a protein from psychrophilic microorganism.PhaSSB possesses...
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Cadmium tri-tert-butoxysilanethiolates: Structural and spectroscopic models of metal sites in proteins
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Cadmium tri-tert-butoxysilanethiolates. Structural and spectroscopic models of metal sites in proteins.
PublicationW publikacji opisano syntezy i struktury dla dwóch heteroleptycznych kompleksów kadmu z rdzeniem CdS2NO2 i CdS2N2. Bis(tri-tert-butoksysilanotiolato)(1-metyloimidazol)kadmu(II) oraz bis(tri-tert-butoksysilanotiolato)bis(1-metyloimidazol)kadmu(II) współistnieją w roztworze chloroformu przy różnych stężeniach Bis(tri-tert-butoksysilanotiolanu) kadmu(II) i 1 metyloimidazolu. Rotzwór ten został scharakteryzowany za pomocą analizy spektralnej...
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Crystal structures of the Bacillus subtilis prophage lytic cassette proteins XepA and YomS
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Proteins Structure Models in the Evaluation of Novel Variant (C.472_477del) in the MOCS2 Gene
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Extension of the UNRES Coarse-Grained Force Field to Membrane Proteins in the Lipid Bilayer
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Water-mediated long-range interactions between the internal vibrations of remote proteins
PublicationIt is generally acknowledged that the mobility of protein atoms and the mobility of water molecules in the solvation layer are connected. In this article, we answer the question whether a similar interdependence exists between the motions of atoms of proteins separated by the hydration layers of variable thickness. The system consisted of a kinesin catalytic domain and a tubulin dimer. It was studied using molecular dynamics simulations....
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Differentially expressed proteins in the blood serum of piglets in response to a diet supplemented with inulin
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FT-Raman Spectroscopy as a Tool to Study the Secondary Structures of Wheat Gliadin Proteins
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Does Nitrogen Fertilization Affect the Secondary Structures of Gliadin Proteins in Hypoallergenic Wheat?
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Why the Solvation Water around Proteins Is More Dense than Bulk Water
PublicationThe main aim of this work is to propose a rational explanation of the commonly observed phenomenon of increasing water density within solvation shell of proteins. We have observed that the geometry of the water–water hydrogen bond network within solvation layer differs from the one in bulk water, and it is the result of interactions of water molecules with protein surface. Altered geometry of the network reflects changes in the...
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Role of the Solvation Water in Remote Interactions of Hyperactive Antifreeze Proteins with the Surface of Ice
PublicationMost protein molecules do not adsorb onto ice, one of the exceptions being so-called antifreeze proteins. In this paper, we describe that there is a force pushing an antifreeze protein molecule away from the ice surface when it is not oriented with its ice-binding plane toward the ice and that this pushing force may be also present even when the protein is oriented with its ice-binding plane toward the ice. This force is absent...
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Why the solvation water around proteins is more dense than bulk water
PublicationThe main aim of this work is to propose a rational explanation of commonly observed phenomenon of increasing water density within solvation shell of proteins. We have observed that geometry of the water-water hydrogen bond network within solvation layer differs from the one in bulk water and it is the effect of interactions of water molecules with protein surface. Altered geometry of the network reflects changes in the structure...
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Single-stranded DNA-binding proteins (SSBs) - sources and applicationsin molecular biology
PublicationBiałka wiążące się do jednoniciowego DNA (SSB) odgrywają ważną rolę w replikacji, rekombinacji i naprawie DNA u bakterii, archea i eukariota. Ostatnio wzrosło zainteresowanie białkami SSB jako przydatnymi narzędziami w metodach badawczych biologii molekularnej, analitycznych i diagnostycznych. Większość znanych prokariotycznych białek SSB zbudowanych jest z czterech podjednostek (homotetramer) z jedną domeną wiążąca (OB) jednoniciowe...
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Biblioteka PG w strukturach ogólnokrajowej sieci bibliotecznej (OSB)
PublicationBiblioteka Politechniki Gdańskiej została włączona do ogólnokrajowej sieci bibliotecznej (OSB). Proces rozbudowy OSB opiera się na wdrażaniu działającego w chmurze (cloud computing) systemu bibliotecznego Alma (z wyszukiwarką Primo), używanego przez ponad 3 tysiące bibliotek na świecie. Jest to system biblioteczny nowej generacji działający w oparciu o usługę chmurową typu Multitenant SaaS. Oznacza to, że system biblioteczny...
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Analysis of structure and properties of DVB–GMA based porous polymers
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Badanie efektywności kodeków źródłowych w radiofonii cyfrowej DAB+
PublicationW Polsce radiofonia cyfrowa jest dostępna dla słuchaczy już od 2013 roku. Jednakże brakuje ogólnodostępnych publikacji naukowych lub też raportów badawczych uzasadniających przyjęte przepływności dla strumieni audio. W artykule przedstawiono badania sprawności kodowania oraz subiektywnej oceny jakości kodeka MPEG-4 HE-AAC v2, wykorzystywanego w standardzie DAB+. Testy prze-prowadzono wg. techniki porównawczej MUSHRA na dwóch grupach,...
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Funkcjonalność systemu operacyjnego Linux uruchamianego z pamięci USB
PublicationSystem operacyjny Linux z uwagi na swoją funkcjonalność, użyteczność oraz warunki licencyjne jest coraz powszechniej wykorzystywany. Wśród licznych dystrybucji tego systemu można wyróżnić takie, które są uruchamiane bezpośrednio z pamięci półprzewodnikowych USB. W artykule zostanie przedstawiona funkcjonalność i parametry użytkowe opracowanej dystrybucji cdlinux.pl uruchamianej z pamięci USB. Dystrybucja charakteryzuje się bezpieczeństwem...