Search results for: biophysical instrumentation
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Mobile Systems (Portable, Handheld, Transportable) for Monitoring Air Pollution
PublicationThe monitoring and analysis of atmospheric air pollutants is a rapidly developing branch of analytical chemistry. The in situ analysis of atmospheric air quality using mobile instrumentation is becoming routine. The article provides information on devices used in various kinds of mobile laboratories. It reviews the portable gas chromatographs and handheld devices used for detecting and determining specific harmful substances in...
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Applying ground penetrating radar to tracking of ancient architectural transformations: the case of the monastery St. Peter on the Island of Rab (Croatia)
PublicationThe ground-penetrating radar (GPR) method has been used for many years in archaeological research. However, thismethod is still not widely used in studies of past architecture. The biggest problem with the implementation of the GPRmethod at such sites is usually connected with extensive debris layers, plant cover and standing relics of walls and otherfeatures that restrict the available measurement area. Despite of these, properly...
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Brygida Mielewska dr
PeopleBorn on 1 December 1972 in Gdynia. Education and professional experience:June 1997 MSc in Physics, Gdańsk University, Faculty of Mathematics and Physics; October 1997 – August 2003 – Assistant at Gdańsk University of Technology (GUT), Faculty of Applied Physics nad Technical Mathematics, Department of Physics of Electronic Phenomena;June 2003 – PhD in Physics, thesis advisor prof. dr hab. Mariusz Zubek; September 2003- January...
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Phong B. Dao D.Sc., Ph.D.
PeoplePhong B. Dao received the Engineer degree in Cybernetics in 2001, the M.Sc. degree in Instrumentation and Control in 2004, both from Hanoi University of Science and Technology in Vietnam, and the Ph.D. degree in Control Engineering in 2011 from the University of Twente, the Netherlands. In May 2020, Dr. Dao received the degree of D.Sc. (Habilitation) in Mechanical Engineering from the AGH University of Science and Technology, Poland....
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Janusz Smulko prof. dr hab. inż.
PeopleHe was born on April 25, 1964 in Kolno. He graduated in 1989 with honors from the Faculty of Electronics at Gdańsk University of Technology, specialising in measuring instruments. In 1989 he took second place in the Red Rose competition for the best student in the Pomerania Region. Since the beginning of his career ha has been associated with Gdańsk University of Technology: research assistant (1989-1996), Assistant Professor (1996-2012),...
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Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology
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Zbigniew Czaja dr hab. inż.
PeopleZbigniew Czaja was born in Czluchow, Poland, in 1970. He graduated from Gdansk University of Technology, Faculty of Electronics, Telecommunications and Informatics in 1995. The Ph.D. degree in electronics was received in 2001 from the same university. He worked as assistant professor at this university from 2002 to 2013. In 2014, he qualified as an associate professor, and in 2017, as a professor. His research interests are in...
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JOURNAL OF GEOPHYSICAL RESEARCH-SPACE PHYSICS
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A review of design approaches for the implementation of low-frequency noise measurement systems
PublicationElectronic noise has its roots in the fundamental physical interactions between matter and charged particles, carrying information about the phenomena that occur at the microscopic level. Therefore, Low-Frequency Noise Measurements (LFNM) are a well-established technique for the characterization of electron devices and materials and, compared to other techniques, they offer the advantage of being non-destructive and of providing...
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Robotics for human health and performance (PG_00054982) 04.2024
e-Learning CoursesDuring this course students will be provided with the knowledge in areas of robotics and biomechanics necessary to design instrumentation for human health and performance, as well as about human-robot interface.
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Beata Pałczyńska dr inż.
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Tools for Automatic Wound Healing Evaluation
PublicationFinal results of the research project devoted to development of a new objective and quantitative method of post cardiosurgery wound healing diagnostics, already preliminary discussed at the QIRT 2014 Conference, is presented. We assumed that thermal processes should be effective in subtle description of temporal changes of tissue thermal properties after surgical interventions. To prove this assumption more than 400 patients after...
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BEEofizyka IBM 22/23
e-Learning CoursesKurs Biofizyki dla studentów IV Inżynierii Biomedycznej Biophysics for Biomedical Engineering + Erasmus students
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Advances in materials engineering instrumentation: new trends and applications
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An integrated geoarchaeological approach to late Iron Age settlement at Kaštelina hillfort (Lopar, Island of Rab, Croatia) using Amplitude Data Comparison (ADC) method and trial excavation
PublicationGeophysical prospection and small-scale archaeological excavation were undertaken on the site of Kaštelina, a Late Iron Age hillfort settlement located on the Stolac promontory in the northern part of Rab island (Kvarner Gulf, Croatia). Within the frame of the “Archaeological topography of the island of Rab” program, a Polish–Croatian team applied a series of multidisciplinary methods to study the occupational history of the...
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BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE
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Gas chromatography-olfactometry (GC-O), electronic noses (e-noses) and electronic tongues (e-tongues) for in vivo food flavour measurement
PublicationThe capter revies two types of artificial olfaction instrumentation, i.e. gas-chromatography-olfactometry (GC-O) and chemical sensor technologies (electronic nose and tongue), combined with multivariate data processing methods as promising approaches for rapid analysis of food. The chapter also includes examples of specific applications for the detection of food flavour and volatile components.
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BJS-03 DO WE NEED FIXATION OF THE MESH IN LAPAROENDOSCOPIC TECHNIQUES FOR M3 INGUINAL DEFECTS? AN EXPERIMENTAL STUDY
PublicationThe authors conducted a research experiment to verify the hypothesis that it is possible to preserve the mesh in the operating field in large direct hernias (M3) without the need to use fixing materials. The results showed that mesh fixation is not the only alternative to preventing recurrence in complex defects and that the type of implant seems to be a key factor from the point of view of mechanics and biophysics.
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BEEofizyka IBM 2023/24
e-Learning CoursesKurs Biofizyki dla studentów IV Inżynierii Biomedycznej Biophysics for Biomedical Engineering (4th semester) + Erasmus students
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Comprehensive two-dimensional gas chromatography - promising technique for analysis of complex food matrices
PublicationThe present paper is focused on brief description of operational principle of comprehensive two-dimensional gas chromatography (GC×GC) technique, instrumentation and data processing. Furthermore, the examples of application in the field of food analysis, performed also in the author's laboratory, are given. The detailed discussion of GC×GC characterization and comparison of the volatile composition of berries of different blue...
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A Set of Low-power Microcontroller-based Modules Used for Testing of Small Energy Measurement Methods
PublicationEstimation of energy consumption of low-power devices is not widely discussed in the scientific literature, but this topic is getting more and more popular. Evaluation process of newly developed methods and instrumentation requires carefull treatment. In order to fulfill this niche, the set of micro-power microcontroller based devices was proposed. The devices represent typical energy consuption profiles and allow experimental verification...
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On the mechanism of nitrobenzene liquid membrane oscillators containing hexadecyltrimethylammonium bromide
PublicationBadano oscylacje różnicy potencjałów elektrycznych między fazami wodnymi oscylatora z membraną ciekłą, zawierającego kwas pikrynowy rozpuszczony w nitrobezenie. Wodnej fazie donorowej znajdował się kationowy surfaktant, zaś faza akceptorowa składała się z wodnego roztworu sacharozy. Zaproponowano mechanizm oscylacji składajacy się z trzech etapów. Zaproponowano procesy zachodzące w każdym etapie. Stwierdzono, że procesy adsorpcji...
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The Effect of Sterols on Amphotericin B Self-Aggregation in a Lipid Bilayer as Revealed by Free Energy Simulations
PublicationAmphotericin B (AmB) is an effective but toxic antifungal drug, known to increase the permeability of the cell membrane, presumably by assembling into transmembrane pores in a sterol-dependent manner. The aggregation of AmB molecules in a phospholipid bilayer is, thus, crucial for the drug’s activity. To provide an insight into the molecular nature of this process, here, we report an atomistic molecular dynamics simulation study...
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Molecular Determinants of Proton Transfer in ATP Synthase FO Complex
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Molecular modeling of amphotericin B - ergosterol primary complex in water II
PublicationPrezentowane badania dotyczą oddziaływania antybiotyku polienowego anfoterycyny B (AmB) i ergosterolu (ERG) (typowego sterolu błonowego komórek grzybowych) na poziomie molekularnym. W odróżnieniu od badanego poprzednio kompleksu binarnego analizowany obecnie kompleks AnB/ERG/AmB charakteryzuje się zdecydowanie wiekszą stabilnością i wzglednie sztywną, sandwiczową geometrią. Za trwałość i geometrie kompleksu odpowiedzialne są oddziaływania...
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Influence of a lipid bilayer on the conformational behavior of amphotericin B derivatives - A molecular dynamics study.
PublicationAmphotericin B (AmB) is an effective but very toxic antifungal antibiotic. In our laboratory a series of AmB derivatives of improved selectivity of action was synthesized and tested. To understand molecular basis of this improvement, comparative conformational studies of amphotericin B and its two more selectivederivatives were carried out in an aqueous solution and in a lipid membrane. These molecular simulation studies revealed...
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Protochlorophyllide in model systems — An approach to in vivo conditions
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Molecular organization of antifungal antibiotic amphotericin B in lipid monolayers studied by means of Fluorescence Lifetime Imaging Microscopy
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Syntheses and DNA binding of new cationic porphyrin–tetrapeptide conjugates
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Binding of new cationic porphyrin–tetrapeptide conjugates to nucleoprotein complexes
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Arbidol targeting influenza virus A Hemagglutinin; A comparative study
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Extension of the Force Matching Method to Anisotropic Coarse-Grained Transferable Force Fields: Application to the Unres Model of Proteins
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Extension of the Unres Package for Physics-Based Coarse-Grained Simulations of Proteins and Protein Complexes to Very Large Systems
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Molecular simulation study of cooperativity in hydrophobic association: clusters of four hydrophobic particles
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Erratum to “Molecular simulation study of cooperativity in hydrophobic association: clusters of four hydrophobic particles” [Biophys. Chem. 105 (2003) 339–359]
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NMR studies of new arginine vasopressin analogs modified with α-2-indanylglycine enantiomers at position 2 bound to sodium dodecyl sulfate micelles
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Generalization of the Elastic Network Model for the Study of Large Conformational Changes in Proteins
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Lateral diffusion coefficients in membranes measured by resonance energy transfer and a new algorithm for diffusion in two dimentions
PublicationOpisano wyniki pomiarów współczynników dyfuzji w membranach przy wykorzystaniu rezonansowego przekazywania energii wzbudzania. Donorem był kompleks metaloorganiczny renu o czasie życia ok. 3ćs, co pozwalało na pomiary współczynników dyfuzji mniejszych od 10 cm2/s. Zmierzono współczynniki dyfuzji w membranach typu DMPG i DOPC w różnych temperaturach.
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Organic solvents aggregating and shaping structural folding of protein, a case study of the protease enzyme
PublicationLow solubility of reactants or products in aqueous solutions can result in the enzymatic catalytic reactions that can occur in non-aqueous solutions. In current study we investigated aqueous solutions containing different organic solvents / deep eutectic solvents (DESs) that can influence the protease enzyme's activity, structural, and thermal stabilities. Retroviral aspartic protease enzyme is responsible for the cleavage of the...
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Sequence-dependent structural properties of B-DNA: what have we learned in 40 years?
PublicationThe structure of B-DNA, the physiological form of the DNA molecule, has been a central topic in biology, chemistry and physics. Far from uniform and rigid, the double helix was revealed as a flexible and structurally polymorphic molecule. Conformational changes that lead to local and global changes in the helix geometry are mediated by a complex choreography of base and backbone rearrangements affecting the ability of the B-DNA...
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Molecular modelling of amphotericin B-ergosterol primary complex in water
PublicationBadano właściwości pierwotnego kompleksu amfoterycyny B z ergosterolem przy pomocy symulacji dynamiki molekularnej. Otrzymane w wyniku naszych symulacji rezultaty słabo odpowiadają postulowanym przez innych autorów modelom kompleksu antybiotyk-sterol. Z drugiej strony uzyskane geometrie nie są sprzeczne z wynikami eksperymentów biofizycznych dotyczących powstawania kompleksów w wodzie i w środowisku wodno-alkoholowym.
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Silica In Silico: A Molecular Dynamics Characterization of the Early Stages of Protein Embedding for Atom Probe Tomography
PublicationA novel procedure for the application of atom probe tomography (APT) to the structural analysis of biological systems, has been recently proposed, whereby the specimen is embedded by a silica matrix and ablated by a pulsed laser source. Such a technique, requires that the silica primer be properly inert and bio-compatible, keeping the native structural features of the system at hand, while condensing into an amorphous, glass-like...
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Amyloid fibril formation in the presence of water structure-affecting solutes
PublicationThe impact of the differently hydrated non-electrolytes (protein structure destabilizers) on the fibrillation of hen egg white lysozyme (HEWL) was investigated. Two isomeric urea derivatives i.e. butylurea (BU) and N,N,N′,N′-tetramethylurea (TMU) were chosen as a tested compounds. The obtained results show that butylurea exerts greater impact on HEWL and its fibrillation than tetramethylurea. Both substances decrease the time of...
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Celebrating 50 years of SWIMs (Salt Water Intrusion Meetings)
PublicationThe Salt Water Intrusion Meetings, or SWIMs, are a series of meetings that focus on seawater intrusion in coastal aquifers and other salinisation processes. 2018 marks the 50th year of the SWIM and the 25th biennial meeting. The SWIM proceedings record half a century of research progress on site characterisation, geophysical and geochemical techniques, variable-density flow, modelling, and water management. The SWIM is positioning...
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BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR AND CELL BIOLOGY OF LIPIDS
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Advances in materials engineering instrumentation: new trends and applications 2022/2023
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Buried Object Characterization by Data-Driven Surrogates and Regression-Enabled Hyperbolic Signature Extraction
PublicationThis work addresses artificial-intelligence-based buried object characterization using FDTD-based electromagnetic simulation toolbox of a Ground Penetrating Radar (GPR) to generate B-scan data. In data collection, FDTD-based simulation tool, gprMax is used. The task is to estimate geophysical parameters of a cylindrical shape object of various radii, buried at different positions in the dry soil medium simultaneously and independently...
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Opportunities and shortcomings of ionic liquids in single-drop microextraction
PublicationThe synergistic combination of ionic liquids (ILs) and single-drop microextraction (SDME) involves a powerful coupling toward the development of sustainable analytical methodologies. This overview provides a survey of the literature regarding the IL-SDME, including a database on relevant physicochemical properties of ILs for their application in SDME, the strategies implemented to combine IL-based SDME methods efficiently with...
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An insight into craft activities in rural areas of Dalmatia province - first data on iron working at the Roman settlement in Lopar (Island of Rab)
PublicationWithin multidisciplinary research carried out at Podšilo bay in Lopar on the island of Rab (north-eastern Adriatic), on the bases of movable finds and, possibly, geophysical measurements, evidence of ironworking has been detected within a Roman rural site where ceramic building materials production was ascertained before. Preliminary analyses of several samples of slug, iron objects and nearby collected minerals support the...
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Performance and operation of the CMS electromagnetic calorimeter
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