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Wyniki wyszukiwania dla: CONFORMATIONAL SEARCH
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In search of a common ground for the space sciences
PublikacjaThe paper discusses the relations between various aspects of human activities performed in space, taking into consideration the past, present and future contexts. Interdisciplinarity and integrity of technological issues combined with legal and management issues were emphasized. Consequently, it was recognized that it is necessary to build a network of universities, research-and-development companies and engineering companies....
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Fast Approximate String Search for Wikification
PublikacjaThe paper presents a novel method for fast approximate string search based on neural distance metrics embeddings. Our research is focused primarily on applying the proposed method for entity retrieval in the Wikification process, which is similar to edit distance-based similarity search on the typical dictionary. The proposed method has been compared with symmetric delete spelling correction algorithm and proven to be more efficient...
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Intelligent Resources Search in Virtual Libraries.
PublikacjaZostała zaprezentowana koncepcja bibliotek cyfrowych oraz temat wyszukiwania zasobów. W celu poprawy jakości procesu wyszukiwania, zostało zaproponowane użycie koncepcji sieci semantycznej zamiast klasycznego sposóbu opisu zasobów bibliograficznych. Została opisana prosta ontologia oparta o Dublin Core meta-data. Zostało przedyskutowane zastosowanie algorytmu przetważania połączeń semantycznych w celu szukania. Zastosowany w Wirtualnej...
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Conformational Studies of Two Bradykinin Antagonists by Using Two-dimensional NMR Techniques and Molecular Dynamics Simulations
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Combining the MARTINI and Structure-Based Coarse-Grained Approaches for the Molecular Dynamics Studies of Conformational Transitions in Proteins
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Conformational studies of [Nphe5]SFTI-1 by means of 2D NMR spectroscopy in conjunction with molecular dynamics calculations
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Conformational studies of highly potent 1-aminocyclohexane-1-carboxylic acid substituted V2 vasopressin agonists
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Structural properties of hydration shell around various conformations of simple polypeptides
PublikacjaIn this paper we investigate structural properties of water within the solvation shell around the peptide core created by a well-defined conformation of polypeptide chain. The following secondary structures are investigated: linear (straight chain), and three helices PII (polyproline-like), 310, and α. We propose using the two-particle contribution to entropy as a rational measure of the water structural ordering within the solvation...
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Conformation-family Monte Carlo: A new method for crystal structure prediction
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Effect of Ion and Binding Site on the Conformation of Chosen Glycosaminoglycans at the Albumin Surface
PublikacjaAlbumin is one of the major components of synovial fluid. Due to its negative surface charge, it plays an essential role in many physiological processes, including the ability to form molecular complexes. In addition, glycosaminoglycans such as hyaluronic acid and chondroitin sulfate are crucial components of synovial fluid involved in the boundary lubrication regime. This study presents the influence of Na+, Mg2+ and Ca2+ ions...
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Recent Developments in Data-Assisted Modeling of Flexible Proteins
PublikacjaMany proteins can fold into well-defined conformations. However, intrinsically-disordered proteins (IDPs) do not possess a defined structure. Moreover, folded multi-domain proteins often digress into alternative conformations. Collectively, the conformational dynamics enables these proteins to fulfill specific functions. Thus, most experimental observables are averaged over the conformations that constitute an ensemble. In this...
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Study of the Experimental and Simulated Vibrational Spectra Together with Conformational Analysis of Thioether Cyanobiphenyl-Based Liquid Crystal Dimers
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Ab initio study of phenyl benzoate: structure, conformational analysis, dipole moment, IR and Raman vibrational spectra
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Cis/trans conformational equilibrium across the N-methylphenylalanine2- N-methylphenylalanine3 peptide bond of arginine vasopressin analogs
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Highly Potent Antidiuretic Antagonists: Conformational Studies of Vasopressin Analogues Modified with 1-Naphthylalanine Enantiomers at Position 2
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Conformational studies of vasopressin and mesotocin using NMR spectroscopy and molecular modelling methods. Part I: studies in water
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Localization of key amino acid residues in the dominant conformational epitopes on thyroid peroxidase recognized by mouse monoclonal antibodies
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MM/PBSA analysis of molecular dynamics simulations of bovine beta-lactoglobulin: free energy gradients in conformational transitions?
PublikacjaPraca dotyczy pH zależnych zmian konformacyjnych EF pętli beta-laktoglobuliny. Zmiany te są śledzone za pomocą metod obliczeniowych chemii (dynamika molekularna oraz metody MM/PBSA).
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Apparatus to search for optical flashes of extragalactic origin
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Parallel tabu search for graph coloring problem
PublikacjaTabu search is a simple, yet powerful meta-heuristic based on local search that has been often used to solve combinatorial optimization problems like the graph coloring problem. This paper presents current taxonomy of patallel tabu search algorithms and compares three parallelization techniques applied to Tabucol, a sequential TS algorithm for graph coloring. The experimental results are based on graphs available from the DIMACS...
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Features of a radial user interface to search engines
PublikacjaThe paper is concerned with a new type of user interface to search engines. Instead of presenting search results in a form of a ranked list, the results are presented in radial arrangement. In the center of the interface the most relevant web page is presented. Other web pages are located around the central one. The location of a web page depends on two factors: its relevance to the query and its content. The relevance has influence...
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Context Search Algorithm for Lexical Knowledge Acquisition
PublikacjaA Context Search algorithm used for lexical knowledge acquisition is presented. Knowledge representation based on psycholinguistic theories of cognitive processes allows for implementation of a computational model of semantic memory in the form of semantic network. A knowledge acquisition using supervised dialog templates have been performed in a word game designed to guess the concept a human user is thinking about. The game,...
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Adaptive Algorithm for Interactive Question-based Search
PublikacjaPopular web search engines tend to improve the relevanceof their result pages, but the search is still keyword-oriented and far from "understanding" the queries' meaning. In the article we propose an interactive question-based search algorithm that might come up helpful for identifying users' intents. We describe the algorithm implemented in a form of a questions game. The stress is put mainly on the most critical aspect of this...
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Synchronous black hole search in directed graphs
PublikacjaThe paper considers a team of robots which has to explore a graph G, where some nodes can be harmful. Robots are initially located at the so-called home base node. The dangerous nodes are the so-called black hole nodes, and once a robot enters in one of them, it is destroyed. The goal is to find a strategy in order to explore G in such a way that minimum number of robots is wasted. The exploration ends if there is at least one...
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Web search results clusterization with background knowledge
PublikacjaClusterization of web pages is an attractive wayfor presenting web resources. Arranging pages into groups ofsimilar topics simplifies and shorten the search process. Thispaper concerns the problem of clustering web pages and presentsour approach to this issue. Our solution is focused on findingsimilarities between documents delivered by different web searchengines. This process was accomplished by applying WordNetdictionary.
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Interactive Information Search in Text Data Collections
PublikacjaThis article presents a new idea for retrieving in text repositories, as well as it describes general infrastructure of a system created to implement and test those ideas. The implemented system differs from today’s standard search engine by introducing process of interactive search with users and data clustering. We present the basic algorithms behind our system and measures we used for results evaluation. The achieved results...
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Harmony Search for Data Mining with Big Data
PublikacjaIn this paper, some harmony search algorithms have been proposed for data mining with big data. Three areas of big data processing have been studied to apply new metaheuristics. The first problem is related to MapReduce architecture that can be supported by a team of harmony search agents in grid infrastructure. The second dilemma involves development of harmony search in preprocessing of data series before data mining. Moreover,...
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Neural Architecture Search for Skin Lesion Classification
PublikacjaDeep neural networks have achieved great success in many domains. However, successful deployment of such systems is determined by proper manual selection of the neural architecture. This is a tedious and time-consuming process that requires expert knowledge. Different tasks need very different architectures to obtain satisfactory results. The group of methods called the neural architecture search (NAS) helps to find effective architecture...
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In search of a new relationship between nature and society
PublikacjaWe live in an era of breakthrough- not only in the literal sense of the word, but the breakthrough of the century or the millennium. New discoveries and the crisis present in the economy, society, religion and ecology forces a review of all universally accepted theories. Nature, ecology and environment are the key words used in every area of human activity. It has led to the development of a new scientific field- the philosophy...
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Acoustic journal bearing - A search for adequate configuration
PublikacjaClassical non-contact bearings are already used in a number of specialist applications but there are somespecialist areas where they cannot be used for variety of reasons and acoustic sliding bearings could be an alternative. The paper presents the quest for a configuration of an acoustic journal bearing and shows that the overall shape of the bearing and its geometry are of a vital importance for the load capacity oft he bearing....
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A Population-Based Method with Selection of a Search Operator
PublikacjaThis paper presents a method based on a population in which the parameters of individuals can be processed by operators from various population-based algorithms. The mechanism of selecting operators is based on the introduction of an additional binary parameters vector located in each individual, on the basis of which it is decided which operators are to be used to modify individuals’ parameters. Thus, in the proposed approach,...
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Focused crawler for trustworthy healthcare information search
PublikacjaArtykuł zawiera opis prac wykonanych w projekcie 6 Programu Ramowego Unii Europejskiej: Personalised Information Platform for life and health Services (PIPS). Głównym celem projektu jest zapewnienie obywatelowi Unii kompleksowego wspomagania w zakresie zagadnień ochrony zdrowia oraz odżywiania. Do realizacji tego celu konieczne jest pozyskanie i dostarczenie obywatelowi wiarygodnej, prawdziwej i aktualnej informacji z tych dziedzin....
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Solution conformations of bradykinin antagonists modified with CαCα cyclized nonaromatic residues
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Molecular dynamics study of the influence of calcium ions on the conformation of gelsolin S2 domain
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Relationship between polymorphism in the CRH gene and the traits of body conformation of Salers cows
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Synthesis, activity on NK-3 tachykinin receptor and conformational solution studies of scyliorhinin II analogs modified at position 16
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Conformational studies of vasopressin and mesotocin using NMR spectroscopy and molecular modelling methods. Part II: studies in the SDS micelle
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Improved conformational space annealing method to treat β-structure with the UNRES force-field and to enhance scalability of parallel implementation
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Characterization of Structural and Energetic Differences between Conformations of the SARS-CoV-2 Spike Protein
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Acetylated adipate of retrograded starch as RS 3/4 type resistant starch
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Physicochemical Properties and Digestion Resistance of Acetylated Starch Obtained from Annealed Starch
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A Backtracking Search Algorithm for Distribution Network Reconfiguration Problem
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Pi of the sky: search for optical flashes of extragalactic origin
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Search for Ultimate Throughput in Ultra-Broadband Photonic Internet
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Search for identity of Pomeranian house by means of educational activities
PublikacjaArchitecture is a universal phenomenon and is a culture-creating field closely related to other fields of art. Hence, experiencing and feeling identity are also conditioned by the proper formation of architectural objects, which are carriers specific values which co-decide about the possibility of this experience occurring in connection with a specific place and the fulfilment of a specific need in it. In the era of ubiquitous...
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Search for the fundamental solution to the vector acoustic wave equations
PublikacjaCzasowo-przestrzenna funkcja Greena pola swobodnego jest dobrze znanym rozwiązaniem podsta-wowym skalarnego niejednorodnego równania falowego. Wyraża ona odpowiedź ośrodka płynnego na punktowe zaburzenie o symetrii sferycznej. Odpowiedź ośrodka na zaburzenie wektorowe nie jest tak oczywista. Artykuł przedstawia oryginalne podejście do problemu, polegające na systematycznej, szcze-gółowej weryfikacji hipotetycznych rozwiązań skalarnych...
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Approximation Strategies for Generalized Binary Search in Weighted Trees
PublikacjaWe consider the following generalization of the binary search problem. A search strategy is required to locate an unknown target node t in a given tree T. Upon querying a node v of the tree, the strategy receives as a reply an indication of the connected component of T\{v} containing the target t. The cost of querying each node is given by a known non-negative weight function, and the considered objective is to minimize the total...
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Spectral Clustering Wikipedia Keyword-Based search Results
PublikacjaThe paper summarizes our research in the area of unsupervised categorization of Wikipedia articles. As a practical result of our research, we present an application of spectral clustering algorithm used for grouping Wikipedia search results. The main contribution of the paper is a representation method for Wikipedia articles that has been based on combination of words and links and used for categoriation of search results in this...
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Search for the most useful geometry of an acoustic journal bearing
PublikacjaComputer simulations of a number of journal bearing’s geometries utilising acoustic levitation were carried out. The choice of the best geometry depended on the ability of a deformed shape, created by piezo-electric elements, to facilitate squeeze film ultrasonic levitation, and also to create three evenly distributed diverging aerodynamic gaps. Deformations of analysed variants of the bearing’s shape were generated by numerical...
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Brief Announcement: Energy Constrained Depth First Search
PublikacjaDepth first search is a natural algorithmic technique for constructing a closed route that visits all vertices of a graph. The length of such route equals, in an edge-weighted tree, twice the total weight of all edges of the tree and this is asymptotically optimal over all exploration strategies. This paper considers a variant of such search strategies where the length of each route is bounded by a positive integer B (e.g. due...