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Search results for: microbial molecular biology
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Molecular Biology of Meniscal Healing: A Narrative Review
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Single-stranded DNA-binding proteins (SSBs) - sources and applicationsin molecular biology
PublicationBiałka wiążące się do jednoniciowego DNA (SSB) odgrywają ważną rolę w replikacji, rekombinacji i naprawie DNA u bakterii, archea i eukariota. Ostatnio wzrosło zainteresowanie białkami SSB jako przydatnymi narzędziami w metodach badawczych biologii molekularnej, analitycznych i diagnostycznych. Większość znanych prokariotycznych białek SSB zbudowanych jest z czterech podjednostek (homotetramer) z jedną domeną wiążąca (OB) jednoniciowe...
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Municipal landfill leachate nitrification in RBC biofilm – Process efficiency and molecular analysis of microbial structure
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Synergic Effect of Selected Ingredients and Calcium Chloride on the Technological, Molecular and Microbial Usefulness of Eggshells and Their Impact on Sensory Properties in a Food Model System
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Two bacterial small heat shock proteins, IbpA and IbpB, form a functional heterodimer
PublicationSmall heat shock proteins (sHsps) are a conserved class of ATP-independent chaperones which in stress conditions bind to unfolded protein substrates and prevent their irreversible aggregation. Substrates trapped in sHsps-containing aggregates are efficiently refolded into native structures by ATP-dependent Hsp70 and Hsp100 chaperones. Most γ-proteobacteria possess a single sHsp (IbpA), while in a subset of Enterobacterales, as...
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Analysis of Reconstituted Tripartite Complex Supports Avidity-based Recruitment of Hsp70 by Substrate Bound J-domain Protein
PublicationHsp70 are ubiquitous, versatile molecular chaperones that cyclically interact with substrate protein(s). The initial step requires synergistic interaction of a substrate and a J-domain protein (JDP) cochaperone, via its J-domain, with Hsp70 to stimulate hydrolysis of its bound ATP. This hydrolysis drives conformational changes in Hsp70 that stabilize substrate binding. However, because of the transient nature of substrate and JDP...
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Molecularly targeted nanoparticles: an emerging tool for evaluation of expression of the receptor for advanced glycation end products in a murine model of peripheral artery disease
PublicationAbstract Background: Molecular imaging with molecularly targeted probes is a powerful tool for studying the spatio-temporal interactions between complex biological processes. The pivotal role of the receptor for advanced glycation end products (RAGE) in numerous pathological processes, aroused the demand for RAGE targeted imaging in various diseases. In the study, we evaluated the use of a diagnostic imaging agent for RAGE quantification...
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Iron–Sulfur Cluster Biogenesis Chaperones: Evidence for Emergence of Mutational Robustness of a Highly Specific Protein–Protein Interaction
PublicationBiogenesis of iron–sulfur clusters (FeS) is a highly conserved process involving Hsp70 and J-protein chaperones. However, Hsp70 specialization differs among species. In most eukaryotes, including Schizosaccharomyces pombe, FeS biogenesis involves interaction between the J-protein Jac1 and the multifunctional Hsp70 Ssc1. But, in Saccharomyces cerevisiae and closely related species, Jac1 interacts with the specialized Hsp70 Ssq1,...
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RecA Proteins from Deinococcus geothermalis and Deinococcus murrayi - Cloning, Purification and Biochemical Characterisation
PublicationEscherichia coli RecA plays a crucial role in recombinational processes, the induction of SOS response and mutagenic lesion bypasses. It has also been demonstrated that RecA protein is indispensable when it comes to the reassembly of shattered chromosomes in gamma-irradiated Deinococcus radiodurans, one of the most radiation-resistant organisms known. Moreover, some functional differences between E. coli and D. radiodurans RecA...
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Functional Similarities and Differences of an Archaeal Hsp70(DnaK) Stress Protein Compared with its Homologue from the Bacterium Escherichia coli
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Polymorphisms in nucleotide excision repair genes and susceptibility to colorectal cancer in the Polish population
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Jerusalem artichoke (Helianthus tuberosus L.) as a medicinal plant and its natural products
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The crystal and solution studies of glucosamine-6-phosphate synthase from Candida albicans
PublicationOkreślono strukturę krystaliczną domeny izomerazowej syntazy glukozamino-6-fosforanu z Candida albicans w stanie natywnym, oraz w kompleksie z inhibitorem allosterycznym UDP-GlcNAc, fruktozo-6-P, glukozo-6-P oraz analogiem stanu przejściowego reakcji enzymatycznej - 2-amino-2-deoksy-D-mannitolo-6-P (ADMP). Na podstawie wyników badań metodą niskokątowego rozpraszania promieni X (SAXS) wydedukowano przypuszczalną strukturę kompletnej...
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Docking simulations, Molecular properties and ADMET studies of novel Chromane6,7diol analogues as potential inhibitors of Mushroom tyrosinase
PublicationResearch on inhibition of tyrosinase enzyme has attained significant value, because tyrosinase inhibitors have potential applications in medicine, cosmetics (as whitening agents) and in agriculture (as bioinsecticides). Determination and elucidation of new tyrosinase inhibitors are not only beneficial for medical purposes, but their promising applications in improving food quality and nutritional...
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Endothelial dysfunction due to eNOS uncoupling: molecular mechanisms as potential therapeutic targets
PublicationNitric oxide (NO) is one of the most important molecules released by endothelial cells, and its antiatherogenic properties support cardiovascular homeostasis. Diminished NO bioavailability is a common hallmark of endothelial dysfunction underlying the patho‑ genesis of the cardiovascular disease. Vascular NO is synthesized by endothelial nitric oxide synthase (eNOS) from the substrate L‑arginine (L‑Arg), with tetrahydrobiopterin...
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Triazoloacridone C-1305 impairs XBP1 splicing by acting as a potential IRE1α endoribonuclease inhibitor
PublicationInositol requiring enzyme 1 alpha (IRE1α) is one of three signaling sensors in the unfolding protein response (UPR) that alleviates endoplasmic reticulum (ER) stress in cells and functions to promote cell survival. During conditions of irrevocable stress, proapoptotic gene expression is induced to promote cell death. One of the three signaling stressors, IRE1α is an serine/threonine-protein kinase/endoribonuclease (RNase) that...
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The immunoregulatory effects of edeine analogues in mice
PublicationZbadano właściwości immunoregulatorowe kilku, otrzymanych na drodze syntezy, uproszczonych analogów peptydowego antybiotyku edeiny w testach in vivo i in vitro z wykorzystaniem modelu mysiego. Jako związek referencyjny zastosowano edeinę B. Otrzymane peptydy wykazywały efekt stymulacyny na proliferację splenocytów z użyciem konkawaliny, podczas gdy zastosowanie mitogenu powodowało hamowanie proliferacji splenocytów. Peptydy hamowały...
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Diversity of Expression Patterns of Lr34, Lr67, and Candidate Genes towards Lr46 with Analysis of Associated miRNAs in Common Wheat Hybrids in Response to Puccinia triticina Fungus
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Potential DPP IV Inhibitory Peptides from Dry-Cured Pork Loins after Hydrolysis: An In Vitro and In Silico Study
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The transition from HIF-1 to HIF-2 during prolonged hypoxia results from reactivation of PHDs and HIF1A mRNA instability
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Rotating Magnetic Field-Assisted Reactor Enhances Mechanisms of Phage Adsorption on Bacterial Cell Surface
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Identification of the metabolic fingerprints in women with polycystic ovary syndrome using the multiplatform metabolomics technique
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Steroidogenesis in the skin: Implications for local immune functions
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Metabolism of 1α-hydroxyvitamin D3 by cytochrome P450scc to biologically active 1α,20-dihydroxyvitamin D3
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On the role of classical and novel forms of vitamin D in melanoma progression and management
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Unusual odd-chain and trans-octadecenoic fatty acids in tissues of feral European beaver (Castor fiber), Eurasian badger (Meles meles) and raccoon dog (Nyctereutes procyonoides).
PublicationW lipidach wyizolowanych z różnych partii ciała bobrów, borsuków i jenotów stwierdzono obecność znaczących ilości niezwykłych jak na zwierzęta jednożołądkowe kwasów tłuszczowych - nieparzystowęglowych nasyconych i jednonienasyconych KT (15:0, 17:0, 15:1 i 17:1) oraz (w lipidach tkanek bobra i jenota) oktadecenowych KT konfiguracji trans, w tym kwasu wakcenowego - KT charakterystycznych dla tkanek i mleka przeżuwaczy. Obecność tych...
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The lipid composition of Legionella dumoffii membrane modulates the interaction with Galleria mellonella apolipophorin III
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Real-Time PCR: molecular technique of many applications
PublicationReal-Time PCR is a sensitive DNA amplification technique initially applied in genetics and molecular biology. It enables in vivo copying of the selected DNA fragment (flanked by two primers) by the thermostable polymerase (in the presence of magnesium ions and deoxynucleotide triphosphates) and simultaneous measurement of the fluorescence. For one or more specific sequences in a DNA sample, real-time PCR enables both detection...
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Fuzyjne polimerazy DNA – otrzymywanie, charakterystyka i zastosowanie
PublicationObecnie reakcje PCR (ang. Polymerase Chain Reaction) wykazują bardzo szerokie zastosowanie w diagnostyce medycznej, biologii molekularnej czy inżynierii genetycznej. Efektywność tych reakcji rozumiana jako wydajność i wierność przeprowadzonej amplifikacji jest nieodłącznie związana ze stosowaną polimerazą DNA i warunkami prowadzenia reakcji PCR. Aby sprostać wymaganiom stawianym przez nowoczesne metody diagnostyczne oraz współczesną...
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Możliwości zastosowań, potencjalne źródła oraz ewolucja technologiczna sposobu otrzymywania trehalozy ze szczególnym uwzględnieniem enzymu syntazy trehalozy [EC 5.4.99.16]
PublicationJedna z wiodących gałęzi współczesnej biotechnologii opiera się na produkcji białek – przede wszystkim enzymów. Są one powszechnie wykorzystywane: od przemysłu chemicznego poprzez przemysł spożywczy aż po medycynę i życie codzienne (czy ktoś wyobraża sobie w dzisiejszych czasach proszek do prania „bez enzymu”). Przed rozwojem nowoczesnych metod biologii molekularnej i inżynierii genetycznej pozyskiwano interesujące substancje z...
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Adaptive response of microbial communities to soluble microbial products.
PublicationBadano wpływ obecności ubocznych produktów mikroorganizmów na stężenie biomasy osadu czynnego oraz na efektywność obniżenia ładunku BZT5 i ChZT w ściekach syntetycznych. Doświadczenia prowadzono w obecności ubocznych produktów mikroorganizmów (Soluble Microbial Products) oraz w warunkach pozbawionych tych produktów.
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Behavior of microbial communities developed in the presence/reduced level of soluble microbial products.
PublicationBadano aktywność mikrobiologiczną organizmów osadu czynnego (adaptowanego i nieadaptowanego) poprzez monitorowanie zmian pH, rozpuszczonego tlenu, BZT5 oraz ChZT w ściekach syntetycznych. Obserwowano pojawianie się ubocznych produktów mikroorganizmów (Soluble Microbial Products) oraz ich wpływ na efekt oczyszczenia ścieków. Ilość obecnych ubocznych produktów mikroorganizmów w trakcie procesu zależała także od rodzaju rozkładanych...
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Analysis of the Role of FRMD5 in the Biology of Papillary Thyroid Carcinoma
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Biobearings: where mechanics meets biology
PublicationStawy człowieka z punktu widzenia mechaniki są łożyskami ślizgowymi, jednak posiadają zupełnie inne właściwości niż łożyska przemysłowe. Artykuł omawia sposoby implementacji znanych zasad zachowania łożysk ślizgowych dla biołożysk z punktu widzenia materiałowego, uwzględniając te osiągnięcia w zakresie tribologii, biologii, chemii organicznej oraz inżynierii hodowli chrząstek, które są związane z łożyskami synowialnymi.
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Herbarium of Division of Marine Biology and Ecology as the Primary Basis for Conservation Status Assessments in the Gulf of Gdańsk
PublicationThe dataset titled Herbarium of Division of Marine Biology and Ecology University of Gdańsk (DMBE) is a research herbarium encompassing specimens of vascular plants and algae hosted by the Laboratory of Marine Plant Ecology at the University of Gdańsk, Poland. The aim of Herbarium is to preserve marine plant and algae collections mostly from the Gulf of Gdańsk, but the herbarium also holds specimens from other parts of the world.
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Glossary on atmospheric electricity and its effects on biology
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Biology, systematics, and clinical manifestations of Zygomycota infections
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The influence of soluble microbial products on microbial community composition: hypothesis of microbial community succession
PublicationRozpuszczalne produkty mikrobiologiczne (SMP) są związkami organicznymi wytwarzanymi podczas rozkładu substratów przez mikroorganizmy osadu czynnego. Zbadano mikroskopowo zmiany składu zespołów mikrobiologicznych (organizmów jedno- i wielokomórkowych) pod wpływem obniżonego lub zwiększonego poziomu SMP. Wysoka zawartość SMP w znacznym stopniu zmieniła skład zespołów mikrobiologicznych, od orzęsków osiadłych (12-175 µm), do...
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Comamonadaceae OTU as a Remnant of an Ancient Microbial Community in Sulfidic Waters
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Antimicrobial molecular nanocarrier–drug conjugates
PublicationMany antimicrobial drugs are poorly active against pathogenic microbes causing intracellular infections, such as Mycobacterium tuberculosis or Plasmodium falciparum. On the other hand, several known antimicrobial agents are not effective enough because of their limited cellular penetration. A common feature of both challenges is the inability of an active agent to cross the biological membrane(s). One of the possible approaches...
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The Influence of External Load on the Performance of Microbial Fuel Cells
PublicationIn this work, the effect of the external load on the current and power generation, as well as on the pollutant removal by microbial fuel cells (MFCs), has been studied by step-wise modifying the external load. The load changes included a direct scan, in which the external resistance was increased from 120 Ω to 3300 Ω, and a subsequent reverse scan, in which the external resistance was decreased back to 120 Ω. The reduction in the...
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Microbial fuel cell applications for removal of petroleum hydrocarbon pollutants: A review
PublicationBioelectrochemical systems (BESs) are considered as the potential approaches to remediate the environments contaminated by hydrocarbons. This review addresses the application of BESs particularly microbial fuel cells (MFCs) in degradation of petroleum hydrocarbons, including BTEXs, from soil, water, wastewater and sediments. Details on reactor design and critical issues are discussed. Aspects on electrodes, redox mediators and...
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Microbial diversity of inflamed and noninflamed gut biopsy tissues in inflammatory bowel disease.
PublicationBACKGROUND: Inflammatory bowel disease (IBD) is a chronic gastrointestinal condition without any known cause or cure. An imbalance in normal gut biota has been identified as an important factor in the inflammatory process. METHODS: Fifty-eight biopsies from Crohn's disease (CD, n = 10), ulcerative colitis (UC, n = 15), and healthy controls (n = 16) were taken from a population-based case-control study. Automated ribosomal intergenic...
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Heterotrophic Anodic Denitrification in Microbial Fuel Cells
PublicationNowadays, pollution caused by energy production systems is a major environmental concern. Therefore, the development of sustainable energy sources is required. Amongst others, the microbial fuel cell (MFC) seems to be a possible solution because it can produce clean energy at the same time that waste is stabilized. Unfortunately, mainly due to industrial discharges, the wastes could contain nitrates, or nitrates precursors such...
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Rapid Microbial Community Changes During Initial Stages of Pine Litter Decomposition
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Chapter 4. Electricity generation from glucose microbial fuel cell
PublicationThe microbial fuel cell was constructed to generate electricity with simultaneous digestion of a glucose fuel by a bacterial biofilm. The decomposition of glucose resulted in releasing of electrons to an anode and to production of some by-products, e.g. metane or organic acids. It was found that maximum electric power density strongly depended on the proton transport through the proton exchange membrane seperating the anolyte and...
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The Role of miRNA-7 in the Biology of Cancer and Modulation of Drug Resistance
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Molywood: streamlining the design and rendering of molecular movies
PublicationMotivation High-quality dynamic visuals are needed at all levels of science communication, from the conference hall to the classroom. As scientific journals embrace new article formats, many key concepts – particularly in structural biology – are also more easily conveyed as videos than still frames. Notwithstanding, the design and rendering of a complex molecular movie remain an arduous task. Here, we introduce Molywood, a robust...
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Performance of microbial fuel cells operated under anoxic conditions
PublicationNowadays, microbial fuel cells (MFC) stand up as a promising renewable energy source. Due to the ability of the MFC to oxidize a wide spectrum of substrates, wastewater seems to be one of the most interesting fuels. Unfortunately, wastewater could contain electron acceptors such as nitrate, which could interfere with the electrical performance of the MFC. In this work, the influence of oxidised nitrogen forms on the electricity...
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The Influent Effects of Flow Rate Profile on thePerformance of Microbial Fuel Cells Model
PublicationThe energy contained in wastewaters has been identified as a promising sustainableenergy resource that could be harvested by using microbial fuel cells (MFC). When dealing with realwastewaters, the MFCs should be able to manage high flow rates and flow rates fluctuations. In thiswork, the short-term effects of the influent flow rate variations on the performance of a microbialfuel cell has been studied. With this aim, the influent...