Search results for: nucleic acids bases
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Inhibitors of amino acids biosynthesis as antifungal agents
PublicationFungal microorganisms, including the human pathogenic yeast and filamentous fungi, are able to synthesize all proteinogenic amino acids, including nine that are essential for humans. A number of enzymes catalyzing particular steps of human-essential amino acid biosynthesis are fungi specific. Numerous studies have shown that auxotrophic mutants of human pathogenic fungi impaired in biosynthesis of particular amino acids exhibit...
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Direct injection liquid chromatography-mass spectrometry (DI-LC-MS) analysis for rapid lipidomic profiling of extracellular vesicles
PublicationExtracellular vesicles (EVs) are small, spherical particles produced by eukaryotic and prokaryotic cells, surrounded by a bilayer membrane and carrying various bioactive molecules, such as proteins, surface receptors, membrane and soluble proteins, lipids, and nucleic acids. EVs are of substantial interest because of their important roles in cell communication, epigenetic regulation and possible application in disease diagnosis...
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Hydration of amino acids: FTIR spectra and molecular dynamics studies
PublicationThe hydration of selected amino acids, alanine, glycine, proline, valine, isoleucine and phenylalanine, has been studied in aqueous solutions by means of FTIR spectra of HDO isotopically diluted in H2O. The difference spectra procedure and the chemometric method have been applied to remove the contribution of bulk water and thus to separate the spectra of solute-affected HDO. To support interpretation of obtained spectral results,...
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Theoretical and Architectural Framework for Contextual Knowledge Bases
PublicationThe paper presents the approach aimed at building modularized knowledge bases in a systematic, context-aware way. The paper focuses on logical modeling of such knowledge bases, including an underlying SIM metamodel. The architecture of a comprehensive set of tools for knowledge-base systems engineering is presented. The tools enable an engineer to design, create and edit a knowledge base schema according to a novel context approach...
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Controlled English Interface for Knowledge Bases
PublicationThis paper describes the approach to interface for OWL Knowledge Bases based on Controlled English that is transformed directly to OWL 2 expressions and back. Two possible modes enable usage of the interface to specify Terminology, World Description as well as Integrity Constrains. Knowledge Base then can be validated against the Integrity Constrains to enable its continuous validation.
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Reasoning with Projection in Multimodular Description Logics Knowledge Bases
PublicationWe present an approach to reasoning with projection, i.e. reasoning in which it is possible to focus on a selected part of knowledge (by neglecting some non-interesting fragments). Projection is most useful for modular knowledge bases in which only parts of knowledge have to be exchanged or imported to other modules. In this paper we present an optimized method of reasoning over results of projection. The tests indicate that the...
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Complexation of amino acids derivatives in water by calix[4]arene phosphonic acids
PublicationSeries of the calix[4]arene phosphonic acids with various substituents at the lower rim was synthesized. Complexing properties of these receptors towards methyl esters of six amino acids strongly depended on the calix[4]arene conformation flexibility. The complex formation processes were monitored using 1H NMR spectroscopy (deuterated phosphate buffer at pD 7.3, 22 oC) and association constant values were evaluated. Inherently...
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Model of management of knowledge bases in the information technology evaluation environment
PublicationThe paper presents the model of management of knowledge bases in multi-agent system for evaluation of information technologies (IT_MAS). Such system is being developed in Gdansk Uni-versity of Technology by Information Technology Management Team. Multi-agent system is supposed to support manager level specialists during decision processes when there is identified need to buy or change any information technology. The main goal of...
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Connections between Mutually Unbiased Bases and Quantum Random Access Codes
PublicationWe present a new quantum communication complexity protocol, the promise--Quantum Random Access Code, which allows us to introduce a new measure of unbiasedness for bases of Hilbert spaces. The proposed measure possesses a clear operational meaning and can be used to investigate whether a specific number of mutually unbiased bases exist in a given dimension by employing Semi--Definite Programming techniques.
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From unextendible product bases to genuinely entangled subspaces
PublicationUnextendible product bases (UPBs) are interesting mathematical objects arising in composite Hilbert spaces that have found various applications in quantum information theory, for instance in a construction of bound entangled states or Bell inequalities without quantum violation. They are closely related to another important notion, completely entangled subspaces (CESs), which are those that do not contain any fully separable pure...
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Paweł Możejko dr hab.
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Developing nucleic acid-based electrical detection systems
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Ion Chromatography in Environmental Analysis of Selected Organic Acids
PublicationLow molecular mass carboxylic acids (LCAs) occur in many environmental compartments dueto natural processes and human activity. When volatile and nonvolatile acids are to be monitored then liquidchromatography, including ion chromatography seems a method of choice. At high pH the acids are inionized form and can be separated as carboxylats by means of anion exchange chromatography. LCAs canalso be separated at low pH by ion exclusion...
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Determination and identification of organic acids in wine samples. Problems and challenges.
PublicationFor long time, organic acids were underestimated. However, during last two decades there is an increasing interest of natural compounds having antioxidant, antimicrobial and anti-inflammatory properties thus organic acids are very preferable. Wine stands as one of the sources of organic acids since they are responsible for its organoleptic and aestethic character. Nevertheless, it is important to not exceed acceptable level of...
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Propensity of salicylamide and ethenzamide cocrystallization with aromatic carboxylic acids
PublicationThe cocrystallization of salicylamide (2-hydroxybenzamide, SMD) and ethenzamide (2-ethoxybenzamide, EMD) with aromatic carboxylic acids was examined both experimentally and theoretically. The supramolecular synthesis taking advantage of the droplet evaporative crystallization (DEC) technique was combined with powder diffraction and vibrational spectroscopy as the analytical tools. This led to identification of eleven new cocrystals...
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Capillary Electrophoresis in Determination of Low Molecular Mass Organic Acids
PublicationThis paper presents overviews the capabilities of capillary electrophoretic techniques to determine low molecular mass organic acids in a variety of aqueous, gas and solid samples. It mainly focuses on short - chain carboxylic acids containing one or more carboxylic groups and possibly some other functional groups (hydroxyl, keto-, amino- etc.). Finally the procedures applied to the determine the acids in different matrices are...
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Boron Difluoride Complexes of Carbamoyl Meldrum's Acids
Publication5-[Hydroxy(aryl/alkylamino)methylene]-2,2-dimethyl-1,3-dioxane-4,6-diones react with BF3•Et2O in mild conditions leading to the formation of boron difluoride complexes of carbamoyl Meldrum's acids. The X-ray structure has been obtained for one representative complex. The obtained new compounds are fairly stable at standard ambient conditions and easily isolable.
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Capillary Electrophoresis in determination of short - chain carboxylic acids in aqueous samples
PublicationAnalysis of pollution is extremely important especially in areas directly adjacent tothe residential district. Studies show that short- chain carboxylic acids are a group ofcompounds widespread around sewage treatment plants, landfills, livestock farms. The mostcommon techniques for determination of short - chain carboxylic acids are chromatographictechniques, especially gas chromatography, whose main limitation is that only volatilemonocarboxylic...
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Towards context-semantic knowledge bases
PublicationW artykule dyskutujemy zagadnienie projektowania kontekstowych baz wiedzy. W oparciu o tezę, że kontekstualizacja jest integralną części procesu konceptualizacji, przeprowadzamy rozszerzenie wybranych pojęć metody OntoClean tak, by choć częściowo uwzględniała ten fakt. Wprowadzamy także definicję ważnego pojęcia semantycznej kontekstowej bazy wiedzy i pokazujemy, że bazy zgodne z modelem SIM spełniają tę definicję.
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Determination of Selected Organic Acids in Animal Farm Water Samples by Ion Chromatography
PublicationLow molecular mass carboxylic acids (LCAs) occur in many environmental compartments due to natural processes and human activity. They are an important group of organic pollutants of waste water that mainly includes, volatile fatty acids, and also dicarboxylic, aromatic, hydroxy- and ketoacids. LCAs are present in the environment at concentrations between 1 to 5000 ppm and different methods have been reported for their determination...
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Journal of Amino Acids
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Negative result about the construction of genuinely entangled subspaces from unextendible product bases
PublicationUnextendible product bases (UPBs) provide a versatile tool with various applications across different areas of quantum information theory. Their comprehensive characterization is thus of great importance and has been a subject of vital interest for over two decades now. An open question asks about the existence of UPBs, which are genuinely unextendible, i.e., they are not extendible even with biproduct vectors. In other words,...
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Composition of fatty acids in selected sorts of biscuits, offered for children
PublicationThe fatty acid (FA) composition, especially total trans-fatty acids (TFA) content in 12 assortments of biscuits offered for children, produced by four different companies, were determined by gas chromatography. Total fat content of the biscuit samples ranged from 2.2 to 22.8 g/100 g of product. The major FAs were palmitic C16:0, oleic C18:1, and linoleic C18:2 acids. Depending on the biscuit type, the total saturated fatty acids...
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Nucleic Acid Therapeutics
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Occurrence and Determination of Volatile Fatty Acids in Landfill Leachate and Gas
PublicationIn landfills containing biological matter volatile fatty acids (VFAs) are generated at high rate at the early stage of waste disposal and their content in leachate is high as compared to the leachate from old parts of landfill since they are converted to methane gas. Monitoring of the leachate for the content of VFAs can help determine the processes occurring in waste and possible effect of the leachate on the environment in the...
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Occurrence and Determination of Volatile Fatty Acids in Landfill Leachate and Gas
PublicationIn landfills containing biological matter volatile fatty acids (VFAs) are generated at high rate at the early stage of waste disposal and their content in leachate is high as compared to the leachate from old parts of landfill since they are converted to methane gas. Monitoring of the leachate for the content of VFAs can help determine the processes occurring in waste and possible effect of the leachate on the environment in the...
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X-ray Photoelectron Spectroscopy of Carboxylic Acids as Corrosion Inhibitors of Aluminium Alloys
PublicationThe datasets, titled X-ray Photoelectron Spectroscopy studies of citric acid adsorption on aluminium alloy 5754 in alkaline media and X-ray Photoelectron Spectroscopy studies of various carboxylic acids adsorption on aluminium alloys in alkaline media, contain XPS studies of the corrosion inhibitory action of selected dicarboxylic acids towards commercially available aluminium alloy 5754 in alkaline media at pH=11. These datasets...
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Comparison of low-temperature cracks intensity on pavements with high modulus asphalt concrete and conventional asphalt concrete bases
PublicationHigh modulus asphalt concrete (HMAC) base courses provide very good resistance to rutting and fatigue but they can increase the risk of low-temperature cracking as compared with conventional asphalt concrete (AC). The article presents the comparison of these two road materials in terms of low-temperature cracking. The statistical method based on the ordered logistic regression model was used. The analysis was based on results of...
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Applicability of phenolic acids as effective enhancers of cocrystals solubility of methylxanthines
PublicationApplicability of phenolic acids as potential cocrystal formers for methylxanthine derivatives was analyzed both in terms of cocrystallization probabilities and solubility advantage. The cocrystal formation abilities were evaluated using mixing enthalpy estimated within the conductor like screening model for real solvents (COSMO-RS) framework. The solubility improvement of potential cocrystals was estimated by formulation of the...
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KQL as Application of SQL Rationale for Knowledge Bases
PublicationW ramach inicjatywy Semantic Web rozwijane są systemy wnioskowania z wiedzy. Ciągle otwartym problemem są również języki dostępu do takich systemów. W artykule zaproponowano nowy język dostępu do zmodularyzowanych baz wiedzy, o cechach umożliwiających jego kompleksowe wykorzystaniew systemach zarządzania wiedzą, w sposób analogiczny do wykorzystania języka SQL w systemach relacyjnych baz danych.
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Production, Transformation and Determination of Volatile Fatty Acids in Farm Animals and the Environment
PublicationThe paper is a critical discussion of the production, transportation and determination of volatile fatty acids in rumens of ruminants. The odor nuisance of the emission of VFAs, often accompanied by volatile nitrogen- and sulfur-organic compounds from animal farming is also discussed.
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Fluorinated Boronic Acids: Acidity and Hydrolytic Stability of Fluorinated Phenylboronic Acids
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Dipole-driven dynamics for near-threshold electron/positron interactions with pyrimidinic DNA bases: a path to compound formations
PublicationCalculations are reported for electron and positron scattering from isolated cytosine and thymine, where the two pyrimidinic single-ring DNA bases, in the gas-phase at energies near the elastic threshold, they reveal the special features of the dipole-driven scattering states. All molecules examined exhibit, in fact, supercritical (>1.67 D) permanent dipoles which can therefore also support, below threshold, excited bound compound...
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Is the Fatty Acids Profile in Blood a Good Predictor of Liver Changes? Correlation of Fatty Acids Profile with Fatty Acids Content in the Liver
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Determination of short-chain monocarboksylic acids in cattle farm and dairy industry wastewater
PublicationThe paper describes application of various techniques to determine short-chain monocarboksylic acids (SCMAs) in samples from the successive steps from milk production: from wastewater from cattle farm to wastewater from dairy industry. Each technique of sample preparation is followed by gas chromatographic analysis.
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The concept of knowledge bases supporting the it systems integration model
PublicationThis paper presents main concepts regarding the design of a knowledge base in order to support IT systems integration. The main goal of the research is to develop a universal method of integration of various systems concerning any possible area of interest. The concept is based on creating a generic mechanism which would support the decision regarding the choice of the integration model. The most important tasks include: key factors...
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A Semantic Algebra for Modularized Description Logics Knowledge Bases
PublicationPublikacja wprowadza pojęcia modularyzacji ontologii opartej na tzw. modułach semantycznych (s-modułach) oraz algebry s-modułów. W pracy zawarto szereg twierdzeń opisujących właściwości algebry, jej związku z klasą algebr cylindrycznych oraz przedyskutowano możliwości zastosowania prezentowanych idei.
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Hydrogen and chalcogen bonds in crystals of chalcogenadiazolecarboxylic acids – competition or cooperation?
PublicationThis article presents crystal structures of chalcogenadiazolecarboxylic acids bearing both a hydrogen and a chalcogen bond donor. The selected molecules varied in the size of the aromatic unit, the chalcogen atom and/or the position of the carboxyl group in the core structure. The most common synthons in their lattice are "R" _"2" ^"2" (8) self-complementary acid dimers or four-membered [Ch···N]2 rings. Supramolecular synthons...
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Total Ionization Cross Sections of Selected Amino Acids
Open Research DataThe data set contains tabulated values of cross-sections for a single electron-impact ionization of selected amino acids (glycine, alanine, phenylalanine, proline and tryptophan) calculated using binary-encouter-Bethe method. The data have been published in graphical form (figure 1) in the following paperA.M. Sheer, P. Mozejko, G.A. Gallup, P.D. Burrow...
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The characterization of collagen‑based scaffolds modified with phenolic acids for tissue engineering application
PublicationThe aim of the experiment was to study the morphology of collagen-based scaffolds modified by caffeic acid, ferulic acid, and gallic acid, their swelling, and degradation rate, as well as the biological properties of scaffolds, such as antioxidant activity, hemo- and cytocompatibility, histological observation, and antibacterial properties. Scaffolds based on collagen with phenolic acid showed higher swelling rate and enzymatic...
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Synthesis of orthogonally protected (3R,4S)- and (3S,4S)-4,5-diamino-3-hy-droxypentanoic acids.
PublicationDwa tytułowe aminokwasy otrzymano z odpowiednich kwasów (S)-2,3-diaminopropanowych. Konfigurację absolutną ustalono za pomocą spektroskopii NMR odpowiednich piperydyno-2-onów.
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Carboxylic acids as efficient corrosion inhibitors of aluminium alloys in alkaline media
PublicationThe efficiency of AA5754 aluminium alloy corrosion inhibition achieved with maleic, malic, succinic, tartaric, citric, tricarballylic acids and serine in alkaline environment (pH 11) was examined. Selected corrosion inhibitors are characterized by different numbers and distribution of carbonyl and hydroxyl groups within their molecules. We have proposed and verified a novel approach for determining the adsorption isotherms based...
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Study of the influence of medium composition on the motility and aggregation of the recombinant Escherichia coli strain AAEC191A/pACYCpBAD-M9 + 0.5% cassaminic acids, M9 + 0.5% cassaminic acids + 0.2% glucose, M9 + 0.5% cassaminic acids + 0.5% glucose
Open Research DataMicrobial motility is a fundamental aspect of many microbial life cycles and is a key survival mechanism that enables microorganisms to navigate diverse and dynamic environmental conditions. This phenomenon becomes particularly important in response to changes in stimuli in time and space. The following experiment aimed to investigate how the composition...
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Study of the influence of medium composition on motility and aggregation of recombinant Escherichia coli strain AAEC191A/pCC90-M9 + 0.5% cassaminic acids, M9 + 0.5% cassaminic acids + 0.2% glucose, M9 + 0.5% cassaminic acids + 0.5% glucose
Open Research DataMicrobial motility is a fundamental aspect of many microbial life cycles and is a key survival mechanism that enables microorganisms to navigate diverse and dynamic environmental conditions. This phenomenon becomes particularly important in response to changes in stimuli in time and space. The following experiment aimed to investigate how the composition...
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Studies on applicability of new solid-phase microextraction fibers for the selective extraction and determination of short - chain monocarboksylic acids
PublicationShort-chain monocarobxylic acids, sometimes referred to as volatile fatty acids (VFA), are a group of low molecular weight alkyl monocarboxylic acids that are widely distributed within the environment. These molecules contain any from 2 to 8 carbon atoms and originate from the anaerobic biodegradation of organic matter such as carbohydrates, proteins, and fats. These compounds are commonly found in the effluents from animal farming,...
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Introduction of knowledge bases to existing systems using the Knowledge Views
PublicationArtykuł ten prezentuje studium przypadku pokazujące jak stopniowo wdrażać bazę wiedzy i wnioskowanie w istniejącym systemie informatycznym korzystając z widoków na bazę wiedzy. Pokrótce przedstawiona jest idea widoków na bazę wiedzy, pokazane przykładowe role, które baza wiedzy może pełnić w systemie korzystającym z bazy danych oraz zaprezentowane jest jak można minimalizować ryzyko wdrażania technologii Semantic Web. Artykuł wymienia...
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Modularized Knowledge Bases Using Contexts, Conglomerates and a Query Language
PublicationArtykuł prezentuje nowatorskie podejście do projektowania i budowy baz wiedzy, zorientowane na wyróżnianie kontekstów i ich implementację za pomocą semantycznych modułów wiedzy zwanych konglomeratami.
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Experimental bases for the rail track surface damage detection system
PublicationA diagnosis of rail surface is generally based on the classical method of direct assessment and track geometry measurements. Identification and qualification of inequality and damage on the surface rails is depend on the skills and experience person who conducting inspection. In times of increasing exploitation of railways, infrastructure managers decide to use systems supporting the assessment of technical condition of the railways....
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Kinetics and mechanism of the dehydrohalogenation of Ar2CHCX3 and Ar2CHCHX2 by strong N-bases
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Study of the influence of medium composition on motility and aggregation of recombinant Escherichia coli strain BL21(DE3)/pCC90-M9 + 0.5% cassaminic acids, M9 + 0.5% cassaminic acids + 0.2% glucose, M9 + 0.5% cassaminic acids + 0.5% glucose
Open Research DataMicrobial motility is a fundamental aspect of many microbial life cycles and is a key survival mechanism that enables microorganisms to navigate diverse and dynamic environmental conditions. This phenomenon becomes particularly important in response to changes in stimuli in time and space. The following experiment aimed to investigate how the composition...