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Search results for: image segmentation
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Image Segmentation of MRI image for Brain Tumor Detection
Publicationthis research work presents a new technique for brain tumor detection by the combination of Watershed algorithm with Fuzzy K-means and Fuzzy C-means (KIFCM) clustering. The MATLAB based proposed simulation model is used to improve the computational simplicity, noise sensitivities, and accuracy rate of segmentation, detection and extraction from MR...
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Deep learning based thermal image segmentation for laboratory animals tracking
PublicationAutomated systems for behaviour classification of laboratory animals are an attractive alternative to manual scoring. However, the proper animals separation and tracking, especially when they are in close contact, is the bottleneck of the behaviour analysis systems. In this paper, we propose a method for the segmentation of thermal images of laboratory rats that are in close contact during social behaviour tests. For this, we are...
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Application of colour image segmentation for localization and extraction text from images
PublicationW otaczającym nas świecie informacja tekstowa odgrywa wielką rolę. W postaci tekstowej podawane są: nazwy ulic, nazwy sklepów i instytucji, opisy przedmiotów np. tytuły książek, opakowań itp. Jednocześnie współczesne programy komputerowe służące do rozpoznawania tekstu (OCR) ''nie radzą sobie'' z analizą obrazów otrzymanaych za pomocą kamer. Segmentacja obrazu z następującą kontekstową analizą parametrów segmentów może dostarczyć...
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Fast and accurate vision-based pattern detection and identification using color and grey image segmentation
PublicationPraca opisuje niewymagającą obliczeniowo metodę wykrywania i identyfikacji robotów mobilnych, która może być wykorzystywana w zawodach gry robotów w piłkę nożną. Wykrywanie robotów opiera się na przetwarzaniu obrazu otrzymanego z kamery. Zasadniczym elementem przetwarzania obrazu jest jego segmentacja opierająca się na rozpoznaniu koloru w systemie HSI.
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MSIS sonar image segmentation method based on underwater viewshed analysis and high-density seabed model
PublicationHigh resolution images of Mechanically Scanned Imaging Sonars can bring detailed representation of underwater area if favorable conditions for acoustic signal to propagate are provided. However to properly asses underwater situation based solely on such data can be challenging for less than proficient interpreter. In this paper we propose a method to enhance interpretative potential of MSIS image by dividing it in to subareas depending...
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Medical Image Segmentation Using Deep Semantic-based Methods: A Review of Techniques, Applications and Emerging Trends
PublicationSemantic-based segmentation (Semseg) methods play an essential part in medical imaging analysis to improve the diagnostic process. In Semseg technique, every pixel of an image is classified into an instance, where each class is corresponded by an instance. In particular, the semantic segmentation can be used by many medical experts in the domain of radiology, ophthalmologists, dermatologist, and image-guided radiotherapy. The authors...
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What are the true volumes of SEGA tumors? Reliability of planimetric and popular semi-automated image segmentation methods
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Comparison of image pre-processing methods in liver segmentation task
PublicationAutomatic liver segmentation of Computed Tomography (CT) images is becoming increasingly important. Although there are many publications in this field there is little explanation why certain pre-processing methods were utilised. This paper presents a comparison of the commonly used approach of Hounsfield Units (HU) windowing, histogram equalisation, and a combination of these methods to try to ascertain what are the differences...
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Segmentation Quality Refinement in Large-Scale Medical Image Dataset with Crowd-Sourced Annotations
PublicationDeployment of different techniques of deep learning including Convolutional Neural Networks (CNN) in image classification systems has accomplished outstanding results. However, the advantages and potential impact of such a system can be completely negated if it does not reach a target accuracy. To achieve high classification accuracy with low variance in medical image classification system, there is needed the large size of the...
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MEAN SHIFT BASED SEGMENTATION FOR BLEEDING REGIONS IN ENDOSCOPIC VIDEOS
PublicationWith a set of 38 manually marked bleeding regions form endoscopic videos, the authors attempted to find an optimal image segmentation method for reproducing doctor’s markup. Mean shift segmentation combined with HSV histogram segmentation were used as a segmentation method, which was then optimized by tuning the parameters of the method using global optimization algorithm. A target function for measuring the quality of segmentation was...
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Smart Karyotyping Image Selection Based on Commonsense Knowledge Reasoning
PublicationKaryotyping requires chromosome instances to be segmented and classified from the metaphase images. One of the difficulties in chromosome segmentation is that the chromosomes are randomly positioned in the image, and there is a great chance for chromosomes to be touched or overlap with others. It is always much easier for operators and automatic programs to tackle images without overlapping chromosomes than ones with largely overlapped...
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The influence of image masks definition onsegmentation results of histopathological imagesusing convolutional neural network
PublicationAbstract—In the era of collecting large amounts of tissue materials, assisting the work of histopathologists with various electronic and information IT tools is an undeniable fact. The traditional interaction between a human pathologist and the glass slide is changing to interaction between an AI pathologist with a whole slide images. One of the important tasks is the segmentation of objects (e.g. cells) in such images. In this...
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Instance segmentation of stack composed of unknown objects
PublicationThe article reviews neural network architectures designed for the segmentation task. It focuses mainly on instance segmentation of stacked objects. The main assumption is that segmentation is based on a color image with an additional depth layer. The paper also introduces the Stacked Bricks Dataset based on three cameras: RealSense L515, ZED2, and a synthetic one. Selected architectures: DeepLab, Mask RCNN, DEtection TRansformer,...
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SegSperm - a dataset of sperm images for blurry and small object segmentation
Open Research DataMany deep learning applications require figure-ground segmentation. The performance of segmentation models varies across modalities and acquisition settings.
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Deep Instance Segmentation of Laboratory Animals in Thermal Images
PublicationIn this paper we focus on the role of deep instance segmentation of laboratory rodents in thermal images. Thermal imaging is very suitable to observe the behaviour of laboratory animals, especially in low light conditions. It is an non-intrusive method allowing to monitor the activity of animals and potentially observe some physiological changes expressed in dynamic thermal patterns. The analysis of the recorded sequence of thermal...
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Review of Segmentation Methods for Coastline Detection in SAR Images
PublicationSynthetic aperture radar (SAR) images acquired by airborne sensors or remote sensing satellites contain the necessary information that can be used to investigate various objects of interest on the surface of the Earth, including coastlines. The coastal zone is of great economic importance and is also very densely populated. The intensive and increasing use of coasts and changes of coastlines motivate researchers to try to assess...
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Ensembling noisy segmentation masks of blurred sperm images
PublicationBackground: Sperm tail morphology and motility have been demonstrated to be important factors in determining sperm quality for in vitro fertilization. However, many existing computer-aided sperm analysis systems leave the sperm tail out of the analysis, as detecting a few tail pixels is challenging. Moreover, some publicly available datasets for classifying morphological defects contain images limited only to the sperm head. This...
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Examining Quality of Hand Segmentation Based on Gaussian Mixture Models
PublicationResults of examination of various implementations of Gaussian mix-ture models are presented in the paper. Two of the implementations belonged to the Intel’s OpenCV 2.4.3 library and utilized Background Subtractor MOG and Background Subtractor MOG2 classes. The third implementation presented in the paper was created by the authors and extended Background Subtractor MOG2 with the possibility of operating on the scaled version of...
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Assessment of particular abdominal aorta section extraction from contrast-enhanced computed tomography angiography
PublicationThe aim of this work is to improve the accuracy of extraction of a particular abdominal aorta section and to reduce the distortion in three-dimensional Computed Tomography Angiography (CTA) images. Imaging modality and quality plays crucial role in the medical diagnostic process, thus ensuring high quality of images is essential at every stage of acquisition and processing.Noise is defined as a disturbance of the image quality...
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An Overview of Image Analysis Techniques in Endoscopic Bleeding Detection
PublicationAuthors review the existing bleeding detection methods focusing their attention on the image processing techniques utilised in the algorithms. In the article, 18 methods were analysed and their functional components were identified. The authors proposed six different groups, to which algorithms’ components were assigned: colour techniques, reflecting features of pixels as individual values, texture techniques, considering spatial...
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Comparison of Selected Neural Network Models Used for Automatic Liver Tumor Segmentation
PublicationAutomatic and accurate segmentation of liver tumors is crucial for the diagnosis and treatment of hepatocellular carcinoma or metastases. However, the task remains challenging due to imprecise boundaries and significant variations in the shape, size, and location of tumors. The present study focuses on tumor segmentation as a more critical aspect from a medical perspective, compared to liver parenchyma segmentation, which is the...
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Semantic segmentation training using imperfect annotations and loss masking
PublicationOne of the most significant factors affecting supervised neural network training is the precision of the annotations. Also, in a case of expert group, the problem of inconsistent data annotations is an integral part of real-world supervised learning processes, well-known to researchers. One practical example is a weak ground truth delineation for medical image segmentation. In this paper, we have developed a new method of accurate...
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Autonomous pick-and-place system based on multiple 3Dsensors and deep learning
PublicationGrasping objects and manipulating them is the main way the robot interacts with its environment. However, for robots to operate in a dynamic environment, a system for determining the gripping position for objects in the scene is also required. For this purpose, neural networks segmenting the point cloud are usually applied. However, training such networks is very complex and their results are unsatisfactory. Therefore, we propose...
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Autonomous Perception and Grasp Generation Based on Multiple 3D Sensors and Deep Learning
PublicationGrasping objects and manipulating them is the main way the robot interacts with its environment. However, for robots to operate in a dynamic environment, a system for determining the gripping position for objects in the scene is also required. For this purpose, neural networks segmenting the point cloud are usually applied. However, training such networks is very complex and their results are unsatisfactory. Therefore, we propose...
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KEMR-Net: A Knowledge-Enhanced Mask Refinement Network for Chromosome Instance Segmentation
PublicationThis article proposes a mask refinement method for chromosome instance segmentation. The proposed method exploits the knowledge representation capability of Neural Knowledge DNA (NK-DNA) to capture the semantics of the chromosome’s shape, texture, and key points, and then it uses the captured knowledge to improve the accuracy and smoothness of the masks. We validate the method’s effectiveness on our latest high-resolution chromosome...
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Smart Approach for Glioma Segmentation in Magnetic Resonance Imaging using Modified Convolutional Network Architecture (U-NET)
PublicationSegmentation of a brain tumor from magnetic resonance multimodal images is a challenging task in the field of medical imaging. The vast diversity in potential target regions, appearance and multifarious intensity threshold levels of various tumor types are few of the major factors that affect segmentation results. An accurate diagnosis and its treatment demand strict delineation of the tumor affected tissues. Herein, we focus on...
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Closer Look at the Uncertainty Estimation in Semantic Segmentation under Distributional Shift
PublicationWhile recent computer vision algorithms achieve impressive performance on many benchmarks, they lack robustness - presented with an image from a different distribution, (e.g. weather or lighting conditions not considered during training), they may produce an erroneous prediction. Therefore, it is desired that such a model will be able to reliably predict its confidence measure. In this work, uncertainty estimation for the task...
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Vident-lab: a dataset for multi-task video processing of phantom dental scenes
Open Research DataWe introduce a new, asymmetrically annotated dataset of natural teeth in phantom scenes for multi-task video processing: restoration, teeth segmentation, and inter-frame homography estimation. Pairs of frames were acquired with a beam splitter. The dataset constitutes a low-quality frame, its high-quality counterpart, a teeth segmentation mask, and...
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Shape-Based Pose Estimation of Robotic Surgical Instruments
PublicationWe describe a detector of robotic instrument parts in image-guided surgery. The detector consists of a huge ensemble of scale-variant and pose-dedicated, rigid appearance templates. The templates, which are equipped with pose-related keypoints and segmentation masks, allow for explicit pose estimation and segmentation of multiple end-effectors as well as fine-grained non-maximum suppression. We train the templates by grouping examples...
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Human-Computer Interface Based on Visual Lip Movement and Gesture Recognition
PublicationThe multimodal human-computer interface (HCI) called LipMouse is presented, allowing a user to work on a computer using movements and gestures made with his/her mouth only. Algorithms for lip movement tracking and lip gesture recognition are presented in details. User face images are captured with a standard webcam. Face detection is based on a cascade of boosted classifiers using Haar-like features. A mouth region is located in...
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Identification of Emotional States Using Phantom Miro M310 Camera
PublicationThe purpose of this paper is to present the possibilities associated with the use of remote sensing methods in identifying human emotional states, and to present the results of the research conducted by the authors in this field. The studies presented involved the use of advanced image analysis to identify areas on the human face that change their activity along with emotional expression. Most of the research carried out in laboratories...
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Three-dimensional modeling and automatic analysis of the human nasal cavity and paranasal sinuses using the computational fluid dynamics method
PublicationPurpose The goal of this study was to develop a complete workflow allowing for conducting computational fluid dynam- ics (CFD) simulation of airflow through the upper airways based on computed tomography (CT) and cone-beam computed tomography (CBCT) studies of individual adult patients. Methods This study is based on CT images of 16 patients. Image processing and model generation of the human nasal cavity and paranasal sinuses...
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Hazard Control in Industrial Environments: A Knowledge-Vision-Based Approach
PublicationThis paper proposes the integration of image processing techniques (such as image segmentation, feature extraction and selection) and a knowledge representation approach in a framework for the development of an automatic system able to identify, in real time, unsafe activities in industrial environments. In this framework, the visual information (feature extraction) acquired from video-camera images and other context based gathered...
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Marta Kuc-Czarnecka dr
PeopleMarta Kuc-Czarnecka is the deputy head of the Department of Statistics and Economics at the Faculty of Management and Economics of the Gdańsk University of Technology. She also serves as the Dean's proxy for AMBA accreditation. She is a co-founder of Rethinking Economics Gdańsk and a member of the Foundation Edward Lipiński for the promotion of pluralism in economic sciences. In 2018-2022, she was Eurofound’s quality of life and...
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Controlling computer by lip gestures employing neural network
PublicationResults of experiments regarding lip gesture recognition with an artificial neural network are discussed. The neural network module forms the core element of a multimodal human-computer interface called LipMouse. This solution allows a user to work on a computer using lip movements and gestures. A user face is detected in a video stream from a standard web camera using a cascade of boosted classifiers working with Haar-like features....
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Essential thrombocythemia - Female, 68 - Tissue image [11290630017295411]
Open Research DataThis is the histopathological image of HEMATOPOIETIC AND RETICULOENDOTHELIAL SYSTEMS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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Essential thrombocythemia - Female, 68 - Tissue image [11290630017294601]
Open Research DataThis is the histopathological image of HEMATOPOIETIC AND RETICULOENDOTHELIAL SYSTEMS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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Essential thrombocythemia - Female, 68 - Tissue image [11290630017291241]
Open Research DataThis is the histopathological image of HEMATOPOIETIC AND RETICULOENDOTHELIAL SYSTEMS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format.
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Melanoma skin cancer detection using mask-RCNN with modified GRU model
PublicationIntroduction: Melanoma Skin Cancer (MSC) is a type of cancer in the human body; therefore, early disease diagnosis is essential for reducing the mortality rate. However, dermoscopic image analysis poses challenges due to factors such as color illumination, light reflections, and the varying sizes and shapes of lesions. To overcome these challenges, an automated framework is proposed in this manuscript. Methods: Initially, dermoscopic...
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Video content analysis in the urban area telemonitoring system
PublicationThe task of constant monitoring of video streams from a large number of cameras and reviewing the recordings in order to find a specified event requires a considerable amount of time and effort from the system operators and it is prone to errors. A solution to this problem is an automatic system for constant analysis of camera images being able to raise an alarm if a predefined event is detected. The chapter presents various aspects...
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SkinDepth - synthetic 3D skin lesion database
Open Research DataSkinDepth is the first synthetic 3D skin lesion database. The release of SkinDepth dataset intends to contribute to the development of algorithms for:
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Paweł Nadachowski mgr inż.
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Hardware-Software Implementation of a Sensor Network for CityTraffic Monitoring Using the FPGA- and ASIC-Based Sensor Nodes
PublicationArtykuł opisuje prototypową sieć sensorową do monitorowania ruchu pojazdów w mieście. Węzły sieci sensorowej, wyposażone w kamerę o niskiej rozdzielczości, obserwują ulice i wykrywają poruszające się obiekty. Detekcja obiektów jest realizowana w oparciu o własny algorytm segmentacji obrazów, wykorzystujący podwójne odejmowanie tła, wykrywanie krawędzi i cieni, działający na dedykowanym systemie mikroelektronicznym typu ''System...
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Creating a radiological database for automatic liver segmentation using artificial intelligence.
PublicationImaging in medicine is an irreplaceable stage in the diagnosis and treatment of cancer. The subsequent therapeutic effect depends on the quality of the imaging tests performed. In recent years we have been observing the evolution of 2D to 3D imaging for many medical fields, including oncological surgery. The aim of the study is to present a method of selection of radiological imaging tests for learning neural networks.
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Detection of the Oocyte Orientation for the ICSI Method Automation
PublicationAutomation or even computer assistance of the popular infertility treatment method: ICSI (Intracytoplasmic Sperm Injection) would speed up the whole process and improve the control of the results. This paper introduces a preliminary research for automatic spermatozoon injection into the oocyte cytoplasm. Here, the method for detection a correct orientation of the polar body of the oocyte is presented. Proposed method uses deep...
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Abdalraheem Ijjeh Ph.D. Eng.
PeopleThe primary research areas of interest are artificial intelligence (AI), machine learning, deep learning, and computer vision, as well as modeling physical phenomena (i.e., guided waves in composite laminates). The research interests described above are utilized for SHM and NDE applications, namely damage detection and localization in composite materials.
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Michał Kassjański
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Emilia Lewandowska
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